RNA–Protein interactions for RNA: ENST00000478473.1

C9orf3-215, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-215ENST00000478473 INPP1P49441 399 aa17.18■□□□□ 0.34
C9orf3-215ENST00000478473 RAB11AP62491 216 aa17.18■□□□□ 0.34
C9orf3-215ENST00000478473 ID3Q02535 119 aa17.18■□□□□ 0.34
C9orf3-215ENST00000478473 CNPY1Q3B7I2 92 aa17.18■□□□□ 0.34
C9orf3-215ENST00000478473 OR8G2PQ6IF36 304 aa17.18■□□□□ 0.34
C9orf3-215ENST00000478473 STXBP6Q8NFX7 210 aa17.18■□□□□ 0.34
C9orf3-215ENST00000478473 SLC35E1Q96K37 410 aa17.18■□□□□ 0.34
C9orf3-215ENST00000478473 A0A0J9YWU9 116 aa17.17■□□□□ 0.34
C9orf3-215ENST00000478473 HOXB5P09067 269 aa17.17■□□□□ 0.34
C9orf3-215ENST00000478473 DHRS2Q13268 280 aa17.17■□□□□ 0.34
C9orf3-215ENST00000478473 THAP8Q8NA92 274 aa17.17■□□□□ 0.34
C9orf3-215ENST00000478473 RNF125Q96EQ8 232 aa17.17■□□□□ 0.34
C9orf3-215ENST00000478473 DNAH1Q9P2D7 4330 aa17.16■□□□□ 0.34
C9orf3-215ENST00000478473 CENPXA8MT69 81 aa17.16■□□□□ 0.34
C9orf3-215ENST00000478473 OR4E1P0C645 316 aa17.16■□□□□ 0.34
C9orf3-215ENST00000478473 IAPPP10997 89 aa17.16■□□□□ 0.34
C9orf3-215ENST00000478473 NUP62P37198 522 aaPredicted RBP17.16■□□□□ 0.34
C9orf3-215ENST00000478473 RPP30P78346 268 aaKnown RBP17.16■□□□□ 0.34
C9orf3-215ENST00000478473 EWSR1Q01844 656 aaKnown RBP eCLIP17.16■□□□□ 0.34
C9orf3-215ENST00000478473 LEMD1Q68G75 181 aa17.16■□□□□ 0.34
C9orf3-215ENST00000478473 TRPT1Q86TN4 253 aaKnown RBP17.16■□□□□ 0.34
C9orf3-215ENST00000478473 TRGV9Q99603 122 aa17.16■□□□□ 0.34
C9orf3-215ENST00000478473 FLVCR2Q9UPI3 526 aa17.16■□□□□ 0.34
C9orf3-215ENST00000478473 IGKV1OR2-108A0A075B7D4 117 aa17.14■□□□□ 0.33
C9orf3-215ENST00000478473 ZFP92A6NM28 416 aa17.14■□□□□ 0.33
C9orf3-215ENST00000478473 FABP1P07148 127 aa17.14■□□□□ 0.33
C9orf3-215ENST00000478473 ZNF90Q03938 601 aa17.14■□□□□ 0.33
C9orf3-215ENST00000478473 LINC00299Q6ZSB3 139 aa17.14■□□□□ 0.33
C9orf3-215ENST00000478473 COQ8AQ8NI60 647 aa17.14■□□□□ 0.33
C9orf3-215ENST00000478473 PLA2G10O15496 165 aa17.13■□□□□ 0.33
C9orf3-215ENST00000478473 ADAP1O75689 374 aa17.13■□□□□ 0.33
C9orf3-215ENST00000478473 GIG44P09565 113 aaPredicted RBP17.13■□□□□ 0.33
C9orf3-215ENST00000478473 TMEM41BQ5BJD5 291 aa17.13■□□□□ 0.33
C9orf3-215ENST00000478473 STHQ8IWL8 128 aa17.13■□□□□ 0.33
C9orf3-215ENST00000478473 TMEM217Q8N7C4 229 aa17.13■□□□□ 0.33
C9orf3-215ENST00000478473 OR4D5Q8NGN0 318 aa17.13■□□□□ 0.33
C9orf3-215ENST00000478473 MAGT1Q9H0U3 335 aa17.13■□□□□ 0.33
C9orf3-215ENST00000478473 NRN1Q9NPD7 142 aa17.13■□□□□ 0.33
C9orf3-215ENST00000478473 PFDN2Q9UHV9 154 aa17.13■□□□□ 0.33
C9orf3-215ENST00000478473 SNRPGP15A8MWD9 76 aa17.12■□□□□ 0.33
C9orf3-215ENST00000478473 WRBO00258 174 aa17.12■□□□□ 0.33
C9orf3-215ENST00000478473 CFDP00746 253 aaPredicted RBP17.12■□□□□ 0.33
C9orf3-215ENST00000478473 ZNF688P0C7X2 276 aa17.12■□□□□ 0.33
C9orf3-215ENST00000478473 C1orf194Q5T5A4 169 aa17.12■□□□□ 0.33
C9orf3-215ENST00000478473 MORN3Q6PF18 240 aaPredicted RBP17.12■□□□□ 0.33
C9orf3-215ENST00000478473 SIGLEC15Q6ZMC9 328 aa17.12■□□□□ 0.33
C9orf3-215ENST00000478473 C11orf68Q9H3H3 251 aaKnown RBP17.12■□□□□ 0.33
C9orf3-215ENST00000478473 CA1P00915 261 aaPredicted RBP17.11■□□□□ 0.33
C9orf3-215ENST00000478473 SPP1P10451 314 aa17.11■□□□□ 0.33
C9orf3-215ENST00000478473 ANXA7P20073 488 aaKnown RBP17.11■□□□□ 0.33
C9orf3-215ENST00000478473 MITD1Q8WV92 249 aa17.11■□□□□ 0.33
C9orf3-215ENST00000478473 RARRES2Q99969 163 aa17.11■□□□□ 0.33
C9orf3-215ENST00000478473 PLECQ15149 4684 aaKnown RBP17.11■□□□□ 0.33
C9orf3-215ENST00000478473 IFNA21P01568 189 aa17.1■□□□□ 0.33
C9orf3-215ENST00000478473 SLC45A2Q9UMX9 530 aa17.1■□□□□ 0.33
C9orf3-215ENST00000478473 STRAPQ9Y3F4 350 aaKnown RBP17.1■□□□□ 0.33
C9orf3-215ENST00000478473 LINC00854A0A1B0GVQ3 168 aa17.09■□□□□ 0.33
C9orf3-215ENST00000478473 JTBO76095 146 aa17.09■□□□□ 0.33
C9orf3-215ENST00000478473 NKX2-1P43699 371 aaPredicted RBP17.09■□□□□ 0.33
C9orf3-215ENST00000478473 OR11H2Q8NH07 326 aa17.09■□□□□ 0.33
C9orf3-215ENST00000478473 RAB40CQ96S21 281 aa17.09■□□□□ 0.33
C9orf3-215ENST00000478473 AGRNO00468 2067 aa17.09■□□□□ 0.33
C9orf3-215ENST00000478473 NUPR2A6NF83 97 aa17.08■□□□□ 0.32
C9orf3-215ENST00000478473 PMS2P5A8MQ11 134 aa17.08■□□□□ 0.32
C9orf3-215ENST00000478473 SNRPD3P62318 126 aaKnown RBP17.08■□□□□ 0.32
C9orf3-215ENST00000478473 POLR2GP62487 172 aaKnown RBP eCLIP17.08■□□□□ 0.32
C9orf3-215ENST00000478473 C4orf46Q504U0 113 aa17.08■□□□□ 0.32
C9orf3-215ENST00000478473 SPANXN5Q5MJ07 72 aa17.08■□□□□ 0.32
C9orf3-215ENST00000478473 SMIM8Q96KF7 97 aa17.08■□□□□ 0.32
C9orf3-215ENST00000478473 PBDC1Q9BVG4 233 aa17.08■□□□□ 0.32
C9orf3-215ENST00000478473 FBXL17Q9UF56 701 aa17.08■□□□□ 0.32
C9orf3-215ENST00000478473 KNCNA6PVL3 124 aa17.07■□□□□ 0.32
C9orf3-215ENST00000478473 LYRM1O43325 122 aa17.07■□□□□ 0.32
C9orf3-215ENST00000478473 PAX9P55771 341 aa17.07■□□□□ 0.32
C9orf3-215ENST00000478473 PSMG4Q5JS54 123 aa17.07■□□□□ 0.32
C9orf3-215ENST00000478473 CCDC32Q9BV29 185 aa17.07■□□□□ 0.32
C9orf3-215ENST00000478473 TAS2R30P59541 319 aa17.06■□□□□ 0.32
C9orf3-215ENST00000478473 LYZP61626 148 aa17.06■□□□□ 0.32
C9orf3-215ENST00000478473 ACTL10Q5JWF8 245 aa17.06■□□□□ 0.32
C9orf3-215ENST00000478473 CEMP1Q6PRD7 247 aaPredicted RBP17.06■□□□□ 0.32
C9orf3-215ENST00000478473 TMEM144Q7Z5S9 345 aa17.06■□□□□ 0.32
C9orf3-215ENST00000478473 CSNK1G2-AS1Q8NCQ2 148 aa17.06■□□□□ 0.32
C9orf3-215ENST00000478473 C20orf85Q9H1P6 137 aa17.06■□□□□ 0.32
C9orf3-215ENST00000478473 PAIP2BQ9ULR5 123 aaKnown RBP17.06■□□□□ 0.32
C9orf3-215ENST00000478473 ZNF705EA8MWA4 302 aaPredicted RBP17.05■□□□□ 0.32
C9orf3-215ENST00000478473 SOCS3O14543 225 aa17.05■□□□□ 0.32
C9orf3-215ENST00000478473 TMEM14EPQ6UXP3 125 aa17.05■□□□□ 0.32
C9orf3-215ENST00000478473 ACOT7LQ6ZUV0 252 aa17.05■□□□□ 0.32
C9orf3-215ENST00000478473 CXorf65A6NEN9 183 aa17.04■□□□□ 0.32
C9orf3-215ENST00000478473 FNDC10F2Z333 226 aa17.04■□□□□ 0.32
C9orf3-215ENST00000478473 H3BP45 60 aa17.04■□□□□ 0.32
C9orf3-215ENST00000478473 TCRBP04435 133 aa17.04■□□□□ 0.32
C9orf3-215ENST00000478473 C4BPBP20851 252 aa17.04■□□□□ 0.32
C9orf3-215ENST00000478473 OR2F1Q13607 317 aa17.04■□□□□ 0.32
C9orf3-215ENST00000478473 ZBTB8BQ8NAP8 495 aaPredicted RBP17.04■□□□□ 0.32
C9orf3-215ENST00000478473 CLUHP3Q96NS8 147 aa17.04■□□□□ 0.32
C9orf3-215ENST00000478473 PSENENQ9NZ42 101 aa17.04■□□□□ 0.32
C9orf3-215ENST00000478473 H3BMM0 161 aa17.03■□□□□ 0.32
C9orf3-215ENST00000478473 IAH1Q2TAA2 248 aaPredicted RBP17.03■□□□□ 0.32
C9orf3-215ENST00000478473 Q8NAQ8 132 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms