RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 GPX4P36969 197 aaPredicted RBP13.49□□□□□ -0.25
COL7A1-209ENST00000474432 ATP5IP56385 69 aaPredicted RBP13.49□□□□□ -0.25
COL7A1-209ENST00000474432 ZNF90Q03938 601 aa13.49□□□□□ -0.25
COL7A1-209ENST00000474432 PPP1R1AQ13522 171 aa13.49□□□□□ -0.25
COL7A1-209ENST00000474432 CSNK1G2-AS1Q8NCQ2 148 aa13.49□□□□□ -0.25
COL7A1-209ENST00000474432 DEDD2Q8WXF8 326 aa13.49□□□□□ -0.25
COL7A1-209ENST00000474432 RAB40CQ96S21 281 aa13.49□□□□□ -0.25
COL7A1-209ENST00000474432 SLC25A21Q9BQT8 299 aaPredicted RBP13.49□□□□□ -0.25
COL7A1-209ENST00000474432 SFT2D2O95562 160 aa13.48□□□□□ -0.25
COL7A1-209ENST00000474432 IFNA4P05014 189 aa13.48□□□□□ -0.25
COL7A1-209ENST00000474432 RBMY1A1P0DJD3 496 aaKnown RBP13.48□□□□□ -0.25
COL7A1-209ENST00000474432 RBMY1CP0DJD4 496 aa13.48□□□□□ -0.25
COL7A1-209ENST00000474432 VAMP1P23763 118 aa13.48□□□□□ -0.25
COL7A1-209ENST00000474432 RBMY1FQ15415 496 aaKnown RBP13.48□□□□□ -0.25
COL7A1-209ENST00000474432 PSMG4Q5JS54 123 aa13.48□□□□□ -0.25
COL7A1-209ENST00000474432 ACTL10Q5JWF8 245 aa13.48□□□□□ -0.25
COL7A1-209ENST00000474432 RNF125Q96EQ8 232 aa13.48□□□□□ -0.25
COL7A1-209ENST00000474432 SRRQ9GZT4 340 aa13.48□□□□□ -0.25
COL7A1-209ENST00000474432 KLK5Q9Y337 293 aaPredicted RBP13.48□□□□□ -0.25
COL7A1-209ENST00000474432 X6R8D5 127 aa13.48□□□□□ -0.25
COL7A1-209ENST00000474432 IGKV1OR2-108A0A075B7D4 117 aa13.47□□□□□ -0.25
COL7A1-209ENST00000474432 CCDC160A6NGH7 325 aa13.47□□□□□ -0.25
COL7A1-209ENST00000474432 PRSS46E5RG02 174 aa13.47□□□□□ -0.25
COL7A1-209ENST00000474432 SPP1P10451 314 aa13.47□□□□□ -0.25
COL7A1-209ENST00000474432 IAPPP10997 89 aa13.47□□□□□ -0.25
COL7A1-209ENST00000474432 S100A5P33763 92 aa13.47□□□□□ -0.25
COL7A1-209ENST00000474432 AP2S1P53680 142 aaPredicted RBP13.47□□□□□ -0.25
COL7A1-209ENST00000474432 MORN3Q6PF18 240 aaPredicted RBP13.47□□□□□ -0.25
COL7A1-209ENST00000474432 C11orf45Q8TAV5 145 aa13.47□□□□□ -0.25
COL7A1-209ENST00000474432 NRN1Q9NPD7 142 aa13.47□□□□□ -0.25
COL7A1-209ENST00000474432 ZNF705EA8MWA4 302 aaPredicted RBP13.46□□□□□ -0.25
COL7A1-209ENST00000474432 EIF2B2P49770 351 aaKnown RBP13.46□□□□□ -0.25
COL7A1-209ENST00000474432 BAK1Q16611 211 aa13.46□□□□□ -0.25
COL7A1-209ENST00000474432 SIGLEC15Q6ZMC9 328 aa13.46□□□□□ -0.25
COL7A1-209ENST00000474432 SEPSECSQ9HD40 501 aaKnown RBP13.46□□□□□ -0.25
COL7A1-209ENST00000474432 IGHV4-28A0A0C4DH34 117 aa13.45□□□□□ -0.26
COL7A1-209ENST00000474432 ZNF701M0R085 212 aaPredicted RBP13.45□□□□□ -0.26
COL7A1-209ENST00000474432 TMEM41BQ5BJD5 291 aa13.45□□□□□ -0.26
COL7A1-209ENST00000474432 OR8G2PQ6IF36 304 aa13.45□□□□□ -0.26
COL7A1-209ENST00000474432 THAP8Q8NA92 274 aa13.45□□□□□ -0.26
COL7A1-209ENST00000474432 SLC35E1Q96K37 410 aa13.45□□□□□ -0.26
COL7A1-209ENST00000474432 SDHCQ99643 169 aaPredicted RBP13.45□□□□□ -0.26
COL7A1-209ENST00000474432 MAGT1Q9H0U3 335 aa13.45□□□□□ -0.26
COL7A1-209ENST00000474432 CLEC5AQ9NY25 188 aa13.45□□□□□ -0.26
COL7A1-209ENST00000474432 TMED3Q9Y3Q3 217 aa13.45□□□□□ -0.26
COL7A1-209ENST00000474432 VPS13DQ5THJ4 4388 aa13.45□□□□□ -0.26
COL7A1-209ENST00000474432 PIGBOS1A0A0B4J2F0 54 aa13.44□□□□□ -0.26
COL7A1-209ENST00000474432 ZFP92A6NM28 416 aa13.44□□□□□ -0.26
COL7A1-209ENST00000474432 H3BMM0 161 aa13.44□□□□□ -0.26
COL7A1-209ENST00000474432 HOXB5P09067 269 aa13.44□□□□□ -0.26
COL7A1-209ENST00000474432 GGNBP1Q5YKI7 109 aa13.44□□□□□ -0.26
COL7A1-209ENST00000474432 GSG1LQ6UXU4 331 aa13.44□□□□□ -0.26
COL7A1-209ENST00000474432 CENPSQ8N2Z9 138 aa13.44□□□□□ -0.26
COL7A1-209ENST00000474432 TRGV9Q99603 122 aa13.44□□□□□ -0.26
COL7A1-209ENST00000474432 PBDC1Q9BVG4 233 aa13.44□□□□□ -0.26
COL7A1-209ENST00000474432 WDR12Q9GZL7 423 aaKnown RBP13.44□□□□□ -0.26
COL7A1-209ENST00000474432 FBXL17Q9UF56 701 aa13.44□□□□□ -0.26
COL7A1-209ENST00000474432 ELOA3CA0A087WX78 387 aaPredicted RBP13.43□□□□□ -0.26
COL7A1-209ENST00000474432 SOCS3O14543 225 aa13.43□□□□□ -0.26
COL7A1-209ENST00000474432 SYNGR2O43760 224 aa13.43□□□□□ -0.26
COL7A1-209ENST00000474432 DEFB1P60022 68 aa13.43□□□□□ -0.26
COL7A1-209ENST00000474432 MFFQ9GZY8 342 aa13.43□□□□□ -0.26
COL7A1-209ENST00000474432 C9orf170A2RU37 121 aa13.42□□□□□ -0.26
COL7A1-209ENST00000474432 NDUFB6O95139 128 aa13.42□□□□□ -0.26
COL7A1-209ENST00000474432 MIFP14174 115 aa13.42□□□□□ -0.26
COL7A1-209ENST00000474432 OR2F1Q13607 317 aa13.42□□□□□ -0.26
COL7A1-209ENST00000474432 GDF5OSQ5U4N7 250 aa13.42□□□□□ -0.26
COL7A1-209ENST00000474432 RPP25LQ8N5L8 163 aaKnown RBP13.42□□□□□ -0.26
COL7A1-209ENST00000474432 C17orf77Q96MU5 243 aa13.42□□□□□ -0.26
COL7A1-209ENST00000474432 HRH4Q9H3N8 390 aa13.42□□□□□ -0.26
COL7A1-209ENST00000474432 FLVCR2Q9UPI3 526 aa13.42□□□□□ -0.26
COL7A1-209ENST00000474432 FRAS1Q86XX4 4008 aa13.42□□□□□ -0.26
COL7A1-209ENST00000474432 WRBO00258 174 aa13.41□□□□□ -0.26
COL7A1-209ENST00000474432 MED6O75586 246 aa13.41□□□□□ -0.26
COL7A1-209ENST00000474432 ADAP1O75689 374 aa13.41□□□□□ -0.26
COL7A1-209ENST00000474432 HLA-DRB4P13762 266 aa13.41□□□□□ -0.26
COL7A1-209ENST00000474432 BTCP35070 178 aa13.41□□□□□ -0.26
COL7A1-209ENST00000474432 UBE2MP61081 183 aaKnown RBP13.41□□□□□ -0.26
COL7A1-209ENST00000474432 LYZP61626 148 aa13.41□□□□□ -0.26
COL7A1-209ENST00000474432 SNRPD3P62318 126 aaKnown RBP13.41□□□□□ -0.26
COL7A1-209ENST00000474432 RAB11AP62491 216 aa13.41□□□□□ -0.26
COL7A1-209ENST00000474432 ID3Q02535 119 aa13.41□□□□□ -0.26
COL7A1-209ENST00000474432 SPANXN2Q5MJ10 180 aa13.41□□□□□ -0.26
COL7A1-209ENST00000474432 LGALS9CQ6DKI2 356 aa13.41□□□□□ -0.26
COL7A1-209ENST00000474432 TMEM182Q6ZP80 229 aaPredicted RBP13.41□□□□□ -0.26
COL7A1-209ENST00000474432 HLA-DRB4X5D2U9 266 aa13.41□□□□□ -0.26
COL7A1-209ENST00000474432 SNRPGP15A8MWD9 76 aa13.4□□□□□ -0.26
COL7A1-209ENST00000474432 NKX2-1P43699 371 aaPredicted RBP13.4□□□□□ -0.26
COL7A1-209ENST00000474432 C1orf194Q5T5A4 169 aa13.4□□□□□ -0.26
COL7A1-209ENST00000474432 CIB3Q96Q77 187 aaPredicted RBP13.4□□□□□ -0.26
COL7A1-209ENST00000474432 TBC1D24Q9ULP9 559 aa13.4□□□□□ -0.26
COL7A1-209ENST00000474432 DNAH10Q8IVF4 4471 aa13.4□□□□□ -0.26
COL7A1-209ENST00000474432 DEDDO75618 318 aa13.39□□□□□ -0.27
COL7A1-209ENST00000474432 NUP62P37198 522 aaPredicted RBP13.39□□□□□ -0.27
COL7A1-209ENST00000474432 XCL2Q9UBD3 114 aa13.39□□□□□ -0.27
COL7A1-209ENST00000474432 PAIP2BQ9ULR5 123 aaKnown RBP13.39□□□□□ -0.27
COL7A1-209ENST00000474432 NAP1L6A6NFF2 107 aa13.38□□□□□ -0.27
COL7A1-209ENST00000474432 PMS2P5A8MQ11 134 aa13.38□□□□□ -0.27
COL7A1-209ENST00000474432 H3BP45 60 aa13.38□□□□□ -0.27
COL7A1-209ENST00000474432 GATA2P23769 480 aaPredicted RBP13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms