RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 TRBV6-7A0A0A0MS04 114 aa0.73□□□□□ -2.29
CCDC88A-212ENST00000474059 TRBV6-8A0A0A6YYG3 113 aa0.73□□□□□ -2.29
CCDC88A-212ENST00000474059 PROSCO94903 275 aa0.73□□□□□ -2.29
CCDC88A-212ENST00000474059 SERPINA1P01009 418 aa0.73□□□□□ -2.29
CCDC88A-212ENST00000474059 HSD11B1P28845 292 aa0.73□□□□□ -2.29
CCDC88A-212ENST00000474059 RNASE4P34096 147 aaKnown RBP0.73□□□□□ -2.29
CCDC88A-212ENST00000474059 ATP5G3P48201 142 aa0.73□□□□□ -2.29
CCDC88A-212ENST00000474059 PIGPP57054 158 aa0.73□□□□□ -2.29
CCDC88A-212ENST00000474059 ESRGQ1W209 222 aa0.73□□□□□ -2.29
CCDC88A-212ENST00000474059 LYRM7Q5U5X0 104 aa0.73□□□□□ -2.29
CCDC88A-212ENST00000474059 LINC00301Q8NCQ3 95 aa0.73□□□□□ -2.29
CCDC88A-212ENST00000474059 OR2T10Q8NGZ9 312 aa0.73□□□□□ -2.29
CCDC88A-212ENST00000474059 ZNF418Q8TF45 676 aaPredicted RBP0.73□□□□□ -2.29
CCDC88A-212ENST00000474059 CHMP6Q96FZ7 201 aa0.73□□□□□ -2.29
CCDC88A-212ENST00000474059 PARVBQ9HBI1 364 aa0.73□□□□□ -2.29
CCDC88A-212ENST00000474059 CEP192Q8TEP8 1941 aa0.73□□□□□ -2.29
CCDC88A-212ENST00000474059 INTS1Q8N201 2190 aaKnown RBP0.73□□□□□ -2.29
CCDC88A-212ENST00000474059 FMN1Q68DA7 1419 aa0.72□□□□□ -2.29
CCDC88A-212ENST00000474059 ADGRL3Q9HAR2 1447 aa0.72□□□□□ -2.29
CCDC88A-212ENST00000474059 EXPH5Q8NEV8 1989 aa0.72□□□□□ -2.29
CCDC88A-212ENST00000474059 OBSL1O75147 1896 aa0.72□□□□□ -2.29
CCDC88A-212ENST00000474059 ANP32AP39687 249 aaKnown RBP0.72□□□□□ -2.29
CCDC88A-212ENST00000474059 CAPZBP47756 277 aa0.72□□□□□ -2.29
CCDC88A-212ENST00000474059 DYNLT1P63172 113 aa0.72□□□□□ -2.29
CCDC88A-212ENST00000474059 EIF5AP63241 154 aaKnown RBP0.72□□□□□ -2.29
CCDC88A-212ENST00000474059 GOLT1AQ6ZVE7 132 aa0.72□□□□□ -2.29
CCDC88A-212ENST00000474059 C3orf56Q8N813 242 aa0.72□□□□□ -2.29
CCDC88A-212ENST00000474059 OR10X1Q8NGY0 326 aa0.72□□□□□ -2.29
CCDC88A-212ENST00000474059 SLAMF6Q96DU3 332 aa0.72□□□□□ -2.29
CCDC88A-212ENST00000474059 OBSCN-AS1Q96MR7 158 aa0.72□□□□□ -2.29
CCDC88A-212ENST00000474059 C9orf16Q9BUW7 83 aa0.72□□□□□ -2.29
CCDC88A-212ENST00000474059 BCL2L10Q9HD36 194 aa0.72□□□□□ -2.29
CCDC88A-212ENST00000474059 OPTCQ9UBM4 332 aa0.72□□□□□ -2.29
CCDC88A-212ENST00000474059 EML6Q6ZMW3 1958 aa0.72□□□□□ -2.29
CCDC88A-212ENST00000474059 FLG2Q5D862 2391 aaPredicted RBP0.71□□□□□ -2.3
CCDC88A-212ENST00000474059 COL6A6A6NMZ7 2263 aa0.71□□□□□ -2.3
CCDC88A-212ENST00000474059 TRBV19A0A075B6N1 114 aa0.71□□□□□ -2.3
CCDC88A-212ENST00000474059 HMGB3O15347 200 aaKnown RBP0.71□□□□□ -2.3
CCDC88A-212ENST00000474059 ATP5HO75947 161 aa0.71□□□□□ -2.3
CCDC88A-212ENST00000474059 GADD45GO95257 159 aa0.71□□□□□ -2.3
CCDC88A-212ENST00000474059 HOXA6P31267 233 aa0.71□□□□□ -2.3
CCDC88A-212ENST00000474059 SRP14P37108 136 aaKnown RBP0.71□□□□□ -2.3
CCDC88A-212ENST00000474059 CNBPP62633 177 aaKnown RBP0.71□□□□□ -2.3
CCDC88A-212ENST00000474059 MRPS15P82914 257 aaKnown RBP0.71□□□□□ -2.3
CCDC88A-212ENST00000474059 KRR1Q13601 381 aaKnown RBP0.71□□□□□ -2.3
CCDC88A-212ENST00000474059 RRN3P1Q2M238 152 aa0.71□□□□□ -2.3
CCDC88A-212ENST00000474059 DEFB115Q30KQ5 88 aa0.71□□□□□ -2.3
CCDC88A-212ENST00000474059 C1orf137Q5JT78 98 aa0.71□□□□□ -2.3
CCDC88A-212ENST00000474059 FAM19A2Q8N3H0 131 aa0.71□□□□□ -2.3
CCDC88A-212ENST00000474059 Q8N814 137 aa0.71□□□□□ -2.3
CCDC88A-212ENST00000474059 SLC30A7Q8NEW0 376 aa0.71□□□□□ -2.3
CCDC88A-212ENST00000474059 STAG3L4Q8TBR4 150 aa0.71□□□□□ -2.3
CCDC88A-212ENST00000474059 PRADC1Q9BSG0 188 aa0.71□□□□□ -2.3
CCDC88A-212ENST00000474059 C6orf62Q9GZU0 229 aaPredicted RBP0.71□□□□□ -2.3
CCDC88A-212ENST00000474059 C14orf132Q9NPU4 83 aa0.71□□□□□ -2.3
CCDC88A-212ENST00000474059 ARMC1Q9NVT9 282 aa0.71□□□□□ -2.3
CCDC88A-212ENST00000474059 ZFP30Q9Y2G7 519 aa0.71□□□□□ -2.3
CCDC88A-212ENST00000474059 MRPS25P82663 173 aaKnown RBP0.7□□□□□ -2.3
CCDC88A-212ENST00000474059 TMED2Q15363 201 aa0.7□□□□□ -2.3
CCDC88A-212ENST00000474059 TAF1AQ15573 450 aaPredicted RBP0.7□□□□□ -2.3
CCDC88A-212ENST00000474059 SOSTDC1Q6X4U4 206 aa0.7□□□□□ -2.3
CCDC88A-212ENST00000474059 PDZD9Q8IXQ8 264 aa0.7□□□□□ -2.3
CCDC88A-212ENST00000474059 Q8IYB0 196 aa0.7□□□□□ -2.3
CCDC88A-212ENST00000474059 CLECL1Q8IZS7 167 aa0.7□□□□□ -2.3
CCDC88A-212ENST00000474059 TEX47Q8TBZ9 253 aa0.7□□□□□ -2.3
CCDC88A-212ENST00000474059 PHB2Q99623 299 aa0.7□□□□□ -2.3
CCDC88A-212ENST00000474059 MRPL57Q9BQC6 102 aaKnown RBP0.7□□□□□ -2.3
CCDC88A-212ENST00000474059 TMEM126AQ9H061 195 aa0.7□□□□□ -2.3
CCDC88A-212ENST00000474059 ACER3Q9NUN7 267 aa0.7□□□□□ -2.3
CCDC88A-212ENST00000474059 RASL12Q9NYN1 266 aa0.7□□□□□ -2.3
CCDC88A-212ENST00000474059 DOCK3Q8IZD9 2030 aa0.7□□□□□ -2.3
CCDC88A-212ENST00000474059 MIA2Q96PC5 1412 aa0.7□□□□□ -2.3
CCDC88A-212ENST00000474059 ARFGEF3Q5TH69 2177 aa0.7□□□□□ -2.3
CCDC88A-212ENST00000474059 ADGRB2O60241 1585 aa0.7□□□□□ -2.3
CCDC88A-212ENST00000474059 MED12LQ86YW9 2145 aa0.7□□□□□ -2.3
CCDC88A-212ENST00000474059 MCM3APO60318 1980 aa0.69□□□□□ -2.3
CCDC88A-212ENST00000474059 CCDC160A6NGH7 325 aa0.69□□□□□ -2.3
CCDC88A-212ENST00000474059 ZNF736B4DX44 427 aaPredicted RBP0.69□□□□□ -2.3
CCDC88A-212ENST00000474059 TIMM17BO60830 172 aa0.69□□□□□ -2.3
CCDC88A-212ENST00000474059 IFNA7P01567 189 aa0.69□□□□□ -2.3
CCDC88A-212ENST00000474059 C1QBP02746 253 aa0.69□□□□□ -2.3
CCDC88A-212ENST00000474059 HSPE1P61604 102 aaKnown RBP0.69□□□□□ -2.3
CCDC88A-212ENST00000474059 C22orf39Q6P5X5 142 aa0.69□□□□□ -2.3
CCDC88A-212ENST00000474059 TEX261Q6UWH6 196 aa0.69□□□□□ -2.3
CCDC88A-212ENST00000474059 LINC00526Q96FQ7 95 aa0.69□□□□□ -2.3
CCDC88A-212ENST00000474059 IMUPQ9GZP8 106 aa0.69□□□□□ -2.3
CCDC88A-212ENST00000474059 ARL5AQ9Y689 179 aa0.69□□□□□ -2.3
CCDC88A-212ENST00000474059 U3KQ87 197 aa0.69□□□□□ -2.3
CCDC88A-212ENST00000474059 RP1P56715 2156 aa0.69□□□□□ -2.3
CCDC88A-212ENST00000474059 ALPK2Q86TB3 2170 aa0.69□□□□□ -2.3
CCDC88A-212ENST00000474059 UBR2Q8IWV8 1755 aa0.68□□□□□ -2.3
CCDC88A-212ENST00000474059 TRGV10A0A0A0MS01 117 aa0.68□□□□□ -2.3
CCDC88A-212ENST00000474059 M0R2N4 97 aa0.68□□□□□ -2.3
CCDC88A-212ENST00000474059 TAX1BP3O14907 124 aa0.68□□□□□ -2.3
CCDC88A-212ENST00000474059 INE1O15225 51 aa0.68□□□□□ -2.3
CCDC88A-212ENST00000474059 NDUFB3O43676 98 aa0.68□□□□□ -2.3
CCDC88A-212ENST00000474059 CST8O60676 142 aa0.68□□□□□ -2.3
CCDC88A-212ENST00000474059 CACNA1BQ00975 2339 aa0.68□□□□□ -2.3
CCDC88A-212ENST00000474059 BCL2L15Q5TBC7 163 aa0.68□□□□□ -2.3
CCDC88A-212ENST00000474059 PXT1Q8NFP0 134 aa0.68□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms