RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 AP2S1P53680 142 aaPredicted RBP13.63□□□□□ -0.23
CCDC88B-206ENST00000473405 KLF9Q13886 244 aaPredicted RBP13.63□□□□□ -0.23
CCDC88B-206ENST00000473405 LGI3Q8N145 548 aa13.63□□□□□ -0.23
CCDC88B-206ENST00000473405 CSNK1G2-AS1Q8NCQ2 148 aa13.63□□□□□ -0.23
CCDC88B-206ENST00000473405 MCFD2Q8NI22 146 aa13.63□□□□□ -0.23
CCDC88B-206ENST00000473405 RAB40CQ96S21 281 aa13.63□□□□□ -0.23
CCDC88B-206ENST00000473405 NRN1Q9NPD7 142 aa13.63□□□□□ -0.23
CCDC88B-206ENST00000473405 X6R8D5 127 aa13.63□□□□□ -0.23
CCDC88B-206ENST00000473405 SRPXP78539 464 aa13.62□□□□□ -0.23
CCDC88B-206ENST00000473405 SIGLEC15Q6ZMC9 328 aa13.62□□□□□ -0.23
CCDC88B-206ENST00000473405 HRH4Q9H3N8 390 aa13.62□□□□□ -0.23
CCDC88B-206ENST00000473405 CLEC5AQ9NY25 188 aa13.62□□□□□ -0.23
CCDC88B-206ENST00000473405 IGKV1D-37A0A075B6S9 117 aa13.61□□□□□ -0.23
CCDC88B-206ENST00000473405 A6NHS1 94 aa13.61□□□□□ -0.23
CCDC88B-206ENST00000473405 NOL3O60936 208 aaKnown RBP13.61□□□□□ -0.23
CCDC88B-206ENST00000473405 IFNA4P05014 189 aa13.61□□□□□ -0.23
CCDC88B-206ENST00000473405 MIFP14174 115 aa13.61□□□□□ -0.23
CCDC88B-206ENST00000473405 OR51G1Q8NGK1 321 aa13.61□□□□□ -0.23
CCDC88B-206ENST00000473405 C2CD4CQ8TF44 421 aa13.61□□□□□ -0.23
CCDC88B-206ENST00000473405 RNF125Q96EQ8 232 aa13.61□□□□□ -0.23
CCDC88B-206ENST00000473405 V9GYH0 126 aa13.61□□□□□ -0.23
CCDC88B-206ENST00000473405 PITX3O75364 302 aa13.6□□□□□ -0.23
CCDC88B-206ENST00000473405 ANXA3P12429 323 aa13.6□□□□□ -0.23
CCDC88B-206ENST00000473405 GAMTQ14353 236 aa13.6□□□□□ -0.23
CCDC88B-206ENST00000473405 TMED4Q7Z7H5 227 aa13.6□□□□□ -0.23
CCDC88B-206ENST00000473405 SEPSECSQ9HD40 501 aaKnown RBP13.6□□□□□ -0.23
CCDC88B-206ENST00000473405 ELOA3CA0A087WX78 387 aaPredicted RBP13.59□□□□□ -0.23
CCDC88B-206ENST00000473405 SNRPD3P62318 126 aaKnown RBP13.59□□□□□ -0.23
CCDC88B-206ENST00000473405 PRR20EP86478 221 aa13.59□□□□□ -0.23
CCDC88B-206ENST00000473405 PRR20CP86479 221 aa13.59□□□□□ -0.23
CCDC88B-206ENST00000473405 PRR20DP86480 221 aa13.59□□□□□ -0.23
CCDC88B-206ENST00000473405 PRR20BP86481 221 aa13.59□□□□□ -0.23
CCDC88B-206ENST00000473405 PRR20AP86496 221 aa13.59□□□□□ -0.23
CCDC88B-206ENST00000473405 ZNF90Q03938 601 aa13.59□□□□□ -0.23
CCDC88B-206ENST00000473405 ZNF79Q15937 498 aa13.59□□□□□ -0.23
CCDC88B-206ENST00000473405 OR1S1Q8NH92 325 aa13.59□□□□□ -0.23
CCDC88B-206ENST00000473405 TBC1D24Q9ULP9 559 aa13.59□□□□□ -0.23
CCDC88B-206ENST00000473405 DUXBA0A1W2PPF3 345 aa13.58□□□□□ -0.24
CCDC88B-206ENST00000473405 ZNF701M0R085 212 aaPredicted RBP13.58□□□□□ -0.24
CCDC88B-206ENST00000473405 FAUP35544 74 aaKnown RBP13.58□□□□□ -0.24
CCDC88B-206ENST00000473405 GPX4P36969 197 aaPredicted RBP13.58□□□□□ -0.24
CCDC88B-206ENST00000473405 ATP5IP56385 69 aaPredicted RBP13.58□□□□□ -0.24
CCDC88B-206ENST00000473405 TMEM128Q5BJH2 165 aa13.58□□□□□ -0.24
CCDC88B-206ENST00000473405 PBDC1Q9BVG4 233 aa13.58□□□□□ -0.24
CCDC88B-206ENST00000473405 ZFP92A6NM28 416 aa13.57□□□□□ -0.24
CCDC88B-206ENST00000473405 C11orf94C9JXX5 98 aa13.57□□□□□ -0.24
CCDC88B-206ENST00000473405 H3BMM0 161 aa13.57□□□□□ -0.24
CCDC88B-206ENST00000473405 HLA-DMBP28068 263 aa13.57□□□□□ -0.24
CCDC88B-206ENST00000473405 PYDC2Q56P42 97 aa13.57□□□□□ -0.24
CCDC88B-206ENST00000473405 OR8G2PQ6IF36 304 aa13.57□□□□□ -0.24
CCDC88B-206ENST00000473405 Q6ZTC4 211 aa13.57□□□□□ -0.24
CCDC88B-206ENST00000473405 TOMM5Q8N4H5 51 aa13.57□□□□□ -0.24
CCDC88B-206ENST00000473405 LRTM2Q8N967 370 aa13.57□□□□□ -0.24
CCDC88B-206ENST00000473405 APLNQ9ULZ1 77 aa13.57□□□□□ -0.24
CCDC88B-206ENST00000473405 IGKV1OR2-108A0A075B7D4 117 aa13.56□□□□□ -0.24
CCDC88B-206ENST00000473405 IAPPP10997 89 aa13.56□□□□□ -0.24
CCDC88B-206ENST00000473405 HLA-DRB4P13762 266 aa13.56□□□□□ -0.24
CCDC88B-206ENST00000473405 NUP62P37198 522 aaPredicted RBP13.56□□□□□ -0.24
CCDC88B-206ENST00000473405 TCTAP57738 103 aa13.56□□□□□ -0.24
CCDC88B-206ENST00000473405 AP3S2P59780 193 aa13.56□□□□□ -0.24
CCDC88B-206ENST00000473405 SLC35E1Q96K37 410 aa13.56□□□□□ -0.24
CCDC88B-206ENST00000473405 WDR12Q9GZL7 423 aaKnown RBP13.56□□□□□ -0.24
CCDC88B-206ENST00000473405 NDUFA13Q9P0J0 144 aa13.56□□□□□ -0.24
CCDC88B-206ENST00000473405 CELA1Q9UNI1 258 aa13.56□□□□□ -0.24
CCDC88B-206ENST00000473405 HLA-DRB4X5D2U9 266 aa13.56□□□□□ -0.24
CCDC88B-206ENST00000473405 DNAH2Q9P225 4427 aa13.56□□□□□ -0.24
CCDC88B-206ENST00000473405 PIGBOS1A0A0B4J2F0 54 aa13.55□□□□□ -0.24
CCDC88B-206ENST00000473405 IGLL5B9A064 214 aa13.55□□□□□ -0.24
CCDC88B-206ENST00000473405 SLC25A6P12236 298 aa13.55□□□□□ -0.24
CCDC88B-206ENST00000473405 VAMP1P23763 118 aa13.55□□□□□ -0.24
CCDC88B-206ENST00000473405 DEFB1P60022 68 aa13.55□□□□□ -0.24
CCDC88B-206ENST00000473405 GDF5OSQ5U4N7 250 aa13.55□□□□□ -0.24
CCDC88B-206ENST00000473405 BATF3Q9NR55 127 aa13.55□□□□□ -0.24
CCDC88B-206ENST00000473405 XCL2Q9UBD3 114 aa13.55□□□□□ -0.24
CCDC88B-206ENST00000473405 PRSS46E5RG02 174 aa13.54□□□□□ -0.24
CCDC88B-206ENST00000473405 SOCS3O14543 225 aa13.54□□□□□ -0.24
CCDC88B-206ENST00000473405 NKX2-1P43699 371 aaPredicted RBP13.54□□□□□ -0.24
CCDC88B-206ENST00000473405 LYZP61626 148 aa13.54□□□□□ -0.24
CCDC88B-206ENST00000473405 PPP1R1AQ13522 171 aa13.54□□□□□ -0.24
CCDC88B-206ENST00000473405 SLC25A21Q9BQT8 299 aaPredicted RBP13.54□□□□□ -0.24
CCDC88B-206ENST00000473405 C1QTNF4Q9BXJ3 329 aa13.54□□□□□ -0.24
CCDC88B-206ENST00000473405 FAT2Q9NYQ8 4349 aa13.53□□□□□ -0.24
CCDC88B-206ENST00000473405 NUTF2P61970 127 aaKnown RBP13.53□□□□□ -0.24
CCDC88B-206ENST00000473405 OR2F1Q13607 317 aa13.53□□□□□ -0.24
CCDC88B-206ENST00000473405 C1orf194Q5T5A4 169 aa13.53□□□□□ -0.24
CCDC88B-206ENST00000473405 CCDC190Q86UF4 302 aa13.53□□□□□ -0.24
CCDC88B-206ENST00000473405 THAP8Q8NA92 274 aa13.53□□□□□ -0.24
CCDC88B-206ENST00000473405 DEDD2Q8WXF8 326 aa13.53□□□□□ -0.24
CCDC88B-206ENST00000473405 TRGV9Q99603 122 aa13.53□□□□□ -0.24
CCDC88B-206ENST00000473405 TRAV10A0A0B4J240 114 aa13.52□□□□□ -0.25
CCDC88B-206ENST00000473405 SFT2D2O95562 160 aa13.52□□□□□ -0.25
CCDC88B-206ENST00000473405 PSMB3P49720 205 aa13.52□□□□□ -0.25
CCDC88B-206ENST00000473405 GSG1LQ6UXU4 331 aa13.52□□□□□ -0.25
CCDC88B-206ENST00000473405 ZNF705AQ6ZN79 300 aaPredicted RBP13.52□□□□□ -0.25
CCDC88B-206ENST00000473405 SAV1Q9H4B6 383 aaPredicted RBP13.52□□□□□ -0.25
CCDC88B-206ENST00000473405 PFDN2Q9UHV9 154 aa13.52□□□□□ -0.25
CCDC88B-206ENST00000473405 TMED3Q9Y3Q3 217 aa13.52□□□□□ -0.25
CCDC88B-206ENST00000473405 PKHD1P08F94 4074 aa13.52□□□□□ -0.25
CCDC88B-206ENST00000473405 SNRPGP15A8MWD9 76 aa13.51□□□□□ -0.25
CCDC88B-206ENST00000473405 FABP1P07148 127 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms