RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 SCGB2A1O75556 95 aa12.1□□□□□ -0.47
USP40-212ENST00000473191 GAMTQ14353 236 aa12.1□□□□□ -0.47
USP40-212ENST00000473191 ETFRF1Q6IPR1 90 aa12.1□□□□□ -0.47
USP40-212ENST00000473191 TOMM5Q8N4H5 51 aa12.1□□□□□ -0.47
USP40-212ENST00000473191 OR1S1Q8NH92 325 aa12.1□□□□□ -0.47
USP40-212ENST00000473191 NARS2Q96I59 477 aaKnown RBP12.1□□□□□ -0.47
USP40-212ENST00000473191 RAB40CQ96S21 281 aa12.1□□□□□ -0.47
USP40-212ENST00000473191 RBM38Q9H0Z9 239 aaKnown RBP12.1□□□□□ -0.47
USP40-212ENST00000473191 X6R8D5 127 aa12.1□□□□□ -0.47
USP40-212ENST00000473191 IGHV4-28A0A0C4DH34 117 aa12.09□□□□□ -0.47
USP40-212ENST00000473191 IFNA4P05014 189 aa12.09□□□□□ -0.47
USP40-212ENST00000473191 PPP1R1AQ13522 171 aa12.09□□□□□ -0.47
USP40-212ENST00000473191 CCDC190Q86UF4 302 aa12.09□□□□□ -0.47
USP40-212ENST00000473191 CSNK1G2-AS1Q8NCQ2 148 aa12.09□□□□□ -0.47
USP40-212ENST00000473191 PBDC1Q9BVG4 233 aa12.09□□□□□ -0.47
USP40-212ENST00000473191 KLK5Q9Y337 293 aaPredicted RBP12.09□□□□□ -0.47
USP40-212ENST00000473191 IGKV1OR2-108A0A075B7D4 117 aa12.08□□□□□ -0.48
USP40-212ENST00000473191 ELOA3CA0A087WX78 387 aaPredicted RBP12.08□□□□□ -0.48
USP40-212ENST00000473191 HELTA6NFD8 242 aa12.08□□□□□ -0.48
USP40-212ENST00000473191 FAM90A26D6RGX4 464 aa12.08□□□□□ -0.48
USP40-212ENST00000473191 ANXA3P12429 323 aa12.08□□□□□ -0.48
USP40-212ENST00000473191 VAMP1P23763 118 aa12.08□□□□□ -0.48
USP40-212ENST00000473191 TMEM128Q5BJH2 165 aa12.08□□□□□ -0.48
USP40-212ENST00000473191 GDF5OSQ5U4N7 250 aa12.08□□□□□ -0.48
USP40-212ENST00000473191 SIGLEC15Q6ZMC9 328 aa12.08□□□□□ -0.48
USP40-212ENST00000473191 RNF125Q96EQ8 232 aa12.08□□□□□ -0.48
USP40-212ENST00000473191 WDR12Q9GZL7 423 aaKnown RBP12.08□□□□□ -0.48
USP40-212ENST00000473191 MAGT1Q9H0U3 335 aa12.08□□□□□ -0.48
USP40-212ENST00000473191 DNAH10Q8IVF4 4471 aa12.08□□□□□ -0.48
USP40-212ENST00000473191 ZNF701M0R085 212 aaPredicted RBP12.07□□□□□ -0.48
USP40-212ENST00000473191 OR2F1Q13607 317 aa12.07□□□□□ -0.48
USP40-212ENST00000473191 NRN1Q9NPD7 142 aa12.07□□□□□ -0.48
USP40-212ENST00000473191 ZFP92A6NM28 416 aa12.06□□□□□ -0.48
USP40-212ENST00000473191 ZNF705EA8MWA4 302 aaPredicted RBP12.06□□□□□ -0.48
USP40-212ENST00000473191 SFT2D2O95562 160 aa12.06□□□□□ -0.48
USP40-212ENST00000473191 HOXB5P09067 269 aa12.06□□□□□ -0.48
USP40-212ENST00000473191 SPP1P10451 314 aa12.06□□□□□ -0.48
USP40-212ENST00000473191 FAUP35544 74 aaKnown RBP12.06□□□□□ -0.48
USP40-212ENST00000473191 SRPXP78539 464 aa12.06□□□□□ -0.48
USP40-212ENST00000473191 PRR20EP86478 221 aa12.06□□□□□ -0.48
USP40-212ENST00000473191 PRR20CP86479 221 aa12.06□□□□□ -0.48
USP40-212ENST00000473191 PRR20DP86480 221 aa12.06□□□□□ -0.48
USP40-212ENST00000473191 PRR20BP86481 221 aa12.06□□□□□ -0.48
USP40-212ENST00000473191 PRR20AP86496 221 aa12.06□□□□□ -0.48
USP40-212ENST00000473191 MORN3Q6PF18 240 aaPredicted RBP12.06□□□□□ -0.48
USP40-212ENST00000473191 NOXA1Q86UR1 476 aa12.06□□□□□ -0.48
USP40-212ENST00000473191 LRTM2Q8N967 370 aa12.06□□□□□ -0.48
USP40-212ENST00000473191 SRRQ9GZT4 340 aa12.06□□□□□ -0.48
USP40-212ENST00000473191 PAIP2BQ9ULR5 123 aaKnown RBP12.06□□□□□ -0.48
USP40-212ENST00000473191 PRSS46E5RG02 174 aa12.05□□□□□ -0.48
USP40-212ENST00000473191 H3BMM0 161 aa12.05□□□□□ -0.48
USP40-212ENST00000473191 GPX4P36969 197 aaPredicted RBP12.05□□□□□ -0.48
USP40-212ENST00000473191 EIF2B2P49770 351 aaKnown RBP12.05□□□□□ -0.48
USP40-212ENST00000473191 AP2S1P53680 142 aaPredicted RBP12.05□□□□□ -0.48
USP40-212ENST00000473191 LYZP61626 148 aa12.05□□□□□ -0.48
USP40-212ENST00000473191 BAK1Q16611 211 aa12.05□□□□□ -0.48
USP40-212ENST00000473191 TMEM182Q6ZP80 229 aaPredicted RBP12.05□□□□□ -0.48
USP40-212ENST00000473191 CACFD1Q9UGQ2 172 aa12.05□□□□□ -0.48
USP40-212ENST00000473191 CELA1Q9UNI1 258 aa12.05□□□□□ -0.48
USP40-212ENST00000473191 FLVCR2Q9UPI3 526 aa12.05□□□□□ -0.48
USP40-212ENST00000473191 DUXBA0A1W2PPF3 345 aa12.04□□□□□ -0.48
USP40-212ENST00000473191 WRBO00258 174 aa12.04□□□□□ -0.48
USP40-212ENST00000473191 FXYD7P58549 80 aa12.04□□□□□ -0.48
USP40-212ENST00000473191 AP3S2P59780 193 aa12.04□□□□□ -0.48
USP40-212ENST00000473191 GGNBP1Q5YKI7 109 aa12.04□□□□□ -0.48
USP40-212ENST00000473191 ZNF767PQ75MW2 155 aa12.04□□□□□ -0.48
USP40-212ENST00000473191 SLC35E1Q96K37 410 aa12.04□□□□□ -0.48
USP40-212ENST00000473191 SDHCQ99643 169 aaPredicted RBP12.04□□□□□ -0.48
USP40-212ENST00000473191 MFFQ9GZY8 342 aa12.04□□□□□ -0.48
USP40-212ENST00000473191 XCL2Q9UBD3 114 aa12.04□□□□□ -0.48
USP40-212ENST00000473191 H3BP45 60 aa12.03□□□□□ -0.48
USP40-212ENST00000473191 SOCS3O14543 225 aa12.03□□□□□ -0.48
USP40-212ENST00000473191 ADAP1O75689 374 aa12.03□□□□□ -0.48
USP40-212ENST00000473191 IGKV3-20P01619 116 aa12.03□□□□□ -0.48
USP40-212ENST00000473191 GATA2P23769 480 aaPredicted RBP12.03□□□□□ -0.48
USP40-212ENST00000473191 S100A5P33763 92 aa12.03□□□□□ -0.48
USP40-212ENST00000473191 LGALS9CQ6DKI2 356 aa12.03□□□□□ -0.48
USP40-212ENST00000473191 Q6ZTC4 211 aa12.03□□□□□ -0.48
USP40-212ENST00000473191 CENPSQ8N2Z9 138 aa12.03□□□□□ -0.48
USP40-212ENST00000473191 C17orf77Q96MU5 243 aa12.03□□□□□ -0.48
USP40-212ENST00000473191 SLC25A21Q9BQT8 299 aaPredicted RBP12.03□□□□□ -0.48
USP40-212ENST00000473191 SCRT1Q9BWW7 348 aa12.03□□□□□ -0.48
USP40-212ENST00000473191 LINC00854A0A1B0GVQ3 168 aa12.02□□□□□ -0.49
USP40-212ENST00000473191 SLC25A6P12236 298 aa12.02□□□□□ -0.49
USP40-212ENST00000473191 MIFP14174 115 aa12.02□□□□□ -0.49
USP40-212ENST00000473191 HLA-DMBP28068 263 aa12.02□□□□□ -0.49
USP40-212ENST00000473191 THAP8Q8NA92 274 aa12.02□□□□□ -0.49
USP40-212ENST00000473191 C2CD4CQ8TF44 421 aa12.02□□□□□ -0.49
USP40-212ENST00000473191 LINC00052Q96N35 136 aa12.02□□□□□ -0.49
USP40-212ENST00000473191 TBC1D24Q9ULP9 559 aa12.02□□□□□ -0.49
USP40-212ENST00000473191 APLNQ9ULZ1 77 aa12.02□□□□□ -0.49
USP40-212ENST00000473191 TMED3Q9Y3Q3 217 aa12.02□□□□□ -0.49
USP40-212ENST00000473191 DNAH6Q9C0G6 4158 aa12.02□□□□□ -0.49
USP40-212ENST00000473191 IGLL5B9A064 214 aa12.01□□□□□ -0.49
USP40-212ENST00000473191 F6UB75 175 aa12.01□□□□□ -0.49
USP40-212ENST00000473191 SYNGR2O43760 224 aa12.01□□□□□ -0.49
USP40-212ENST00000473191 HLA-DRB4P13762 266 aa12.01□□□□□ -0.49
USP40-212ENST00000473191 SNRPD3P62318 126 aaKnown RBP12.01□□□□□ -0.49
USP40-212ENST00000473191 RAB11AP62491 216 aa12.01□□□□□ -0.49
USP40-212ENST00000473191 CNPY1Q3B7I2 92 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms