RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 TMEM128Q5BJH2 165 aa11.85□□□□□ -0.51
COL9A3-208ENST00000469802 LRTM2Q8N967 370 aa11.85□□□□□ -0.51
COL9A3-208ENST00000469802 DEDD2Q8WXF8 326 aa11.85□□□□□ -0.51
COL9A3-208ENST00000469802 SEPSECSQ9HD40 501 aaKnown RBP11.85□□□□□ -0.51
COL9A3-208ENST00000469802 NRN1Q9NPD7 142 aa11.85□□□□□ -0.51
COL9A3-208ENST00000469802 ZNF705EA8MWA4 302 aaPredicted RBP11.84□□□□□ -0.51
COL9A3-208ENST00000469802 DEFB4AO15263 64 aa11.84□□□□□ -0.51
COL9A3-208ENST00000469802 PYDC2Q56P42 97 aa11.84□□□□□ -0.51
COL9A3-208ENST00000469802 PSMG4Q5JS54 123 aa11.84□□□□□ -0.51
COL9A3-208ENST00000469802 ACTL10Q5JWF8 245 aa11.84□□□□□ -0.51
COL9A3-208ENST00000469802 SIGLEC15Q6ZMC9 328 aa11.84□□□□□ -0.51
COL9A3-208ENST00000469802 TMED4Q7Z7H5 227 aa11.84□□□□□ -0.51
COL9A3-208ENST00000469802 CCDC190Q86UF4 302 aa11.84□□□□□ -0.51
COL9A3-208ENST00000469802 TOMM5Q8N4H5 51 aa11.84□□□□□ -0.51
COL9A3-208ENST00000469802 CSNK1G2-AS1Q8NCQ2 148 aa11.84□□□□□ -0.51
COL9A3-208ENST00000469802 OR51G1Q8NGK1 321 aa11.84□□□□□ -0.51
COL9A3-208ENST00000469802 OR1S1Q8NH92 325 aa11.84□□□□□ -0.51
COL9A3-208ENST00000469802 RNF125Q96EQ8 232 aa11.84□□□□□ -0.51
COL9A3-208ENST00000469802 RBM38Q9H0Z9 239 aaKnown RBP11.84□□□□□ -0.51
COL9A3-208ENST00000469802 HRH4Q9H3N8 390 aa11.84□□□□□ -0.51
COL9A3-208ENST00000469802 SLC25A6P12236 298 aa11.83□□□□□ -0.52
COL9A3-208ENST00000469802 GPX4P36969 197 aaPredicted RBP11.83□□□□□ -0.52
COL9A3-208ENST00000469802 GAMTQ14353 236 aa11.83□□□□□ -0.52
COL9A3-208ENST00000469802 OR8G2PQ6IF36 304 aa11.83□□□□□ -0.52
COL9A3-208ENST00000469802 RAB40CQ96S21 281 aa11.83□□□□□ -0.52
COL9A3-208ENST00000469802 SLC25A21Q9BQT8 299 aaPredicted RBP11.83□□□□□ -0.52
COL9A3-208ENST00000469802 X6R8D5 127 aa11.83□□□□□ -0.52
COL9A3-208ENST00000469802 IGHV4-28A0A0C4DH34 117 aa11.82□□□□□ -0.52
COL9A3-208ENST00000469802 ZNF701M0R085 212 aaPredicted RBP11.82□□□□□ -0.52
COL9A3-208ENST00000469802 IFNA4P05014 189 aa11.82□□□□□ -0.52
COL9A3-208ENST00000469802 RBMY1A1P0DJD3 496 aaKnown RBP11.82□□□□□ -0.52
COL9A3-208ENST00000469802 RBMY1CP0DJD4 496 aa11.82□□□□□ -0.52
COL9A3-208ENST00000469802 MIFP14174 115 aa11.82□□□□□ -0.52
COL9A3-208ENST00000469802 NUP62P37198 522 aaPredicted RBP11.82□□□□□ -0.52
COL9A3-208ENST00000469802 RBMY1FQ15415 496 aaKnown RBP11.82□□□□□ -0.52
COL9A3-208ENST00000469802 LGALS9CQ6DKI2 356 aa11.82□□□□□ -0.52
COL9A3-208ENST00000469802 FBXL17Q9UF56 701 aa11.82□□□□□ -0.52
COL9A3-208ENST00000469802 DNAH6Q9C0G6 4158 aa11.81□□□□□ -0.52
COL9A3-208ENST00000469802 ZFP92A6NM28 416 aa11.81□□□□□ -0.52
COL9A3-208ENST00000469802 VAMP1P23763 118 aa11.81□□□□□ -0.52
COL9A3-208ENST00000469802 SNRPD3P62318 126 aaKnown RBP11.81□□□□□ -0.52
COL9A3-208ENST00000469802 ZNF90Q03938 601 aa11.81□□□□□ -0.52
COL9A3-208ENST00000469802 PPP1R1AQ13522 171 aa11.81□□□□□ -0.52
COL9A3-208ENST00000469802 SLC35E1Q96K37 410 aa11.81□□□□□ -0.52
COL9A3-208ENST00000469802 VPS13DQ5THJ4 4388 aa11.81□□□□□ -0.52
COL9A3-208ENST00000469802 IGKV1OR2-108A0A075B7D4 117 aa11.8□□□□□ -0.52
COL9A3-208ENST00000469802 PRSS46E5RG02 174 aa11.8□□□□□ -0.52
COL9A3-208ENST00000469802 SFT2D2O95562 160 aa11.8□□□□□ -0.52
COL9A3-208ENST00000469802 S100A5P33763 92 aa11.8□□□□□ -0.52
COL9A3-208ENST00000469802 RPP25LQ8N5L8 163 aaKnown RBP11.8□□□□□ -0.52
COL9A3-208ENST00000469802 TMED3Q9Y3Q3 217 aa11.8□□□□□ -0.52
COL9A3-208ENST00000469802 ELOA3CA0A087WX78 387 aaPredicted RBP11.79□□□□□ -0.52
COL9A3-208ENST00000469802 H3BMM0 161 aa11.79□□□□□ -0.52
COL9A3-208ENST00000469802 IAPPP10997 89 aa11.79□□□□□ -0.52
COL9A3-208ENST00000469802 HLA-DRB4P13762 266 aa11.79□□□□□ -0.52
COL9A3-208ENST00000469802 TCTAP57738 103 aa11.79□□□□□ -0.52
COL9A3-208ENST00000469802 THAP8Q8NA92 274 aa11.79□□□□□ -0.52
COL9A3-208ENST00000469802 C2CD4CQ8TF44 421 aa11.79□□□□□ -0.52
COL9A3-208ENST00000469802 TRGV9Q99603 122 aa11.79□□□□□ -0.52
COL9A3-208ENST00000469802 PBDC1Q9BVG4 233 aa11.79□□□□□ -0.52
COL9A3-208ENST00000469802 SRRQ9GZT4 340 aa11.79□□□□□ -0.52
COL9A3-208ENST00000469802 CLEC5AQ9NY25 188 aa11.79□□□□□ -0.52
COL9A3-208ENST00000469802 TBC1D24Q9ULP9 559 aa11.79□□□□□ -0.52
COL9A3-208ENST00000469802 HLA-DRB4X5D2U9 266 aa11.79□□□□□ -0.52
COL9A3-208ENST00000469802 C11orf94C9JXX5 98 aa11.78□□□□□ -0.52
COL9A3-208ENST00000469802 SOCS3O14543 225 aa11.78□□□□□ -0.52
COL9A3-208ENST00000469802 MED6O75586 246 aa11.78□□□□□ -0.52
COL9A3-208ENST00000469802 FABP1P07148 127 aa11.78□□□□□ -0.52
COL9A3-208ENST00000469802 NKX2-1P43699 371 aaPredicted RBP11.78□□□□□ -0.52
COL9A3-208ENST00000469802 RAB11AP62491 216 aa11.78□□□□□ -0.52
COL9A3-208ENST00000469802 C1orf194Q5T5A4 169 aa11.78□□□□□ -0.52
COL9A3-208ENST00000469802 CENPSQ8N2Z9 138 aa11.78□□□□□ -0.52
COL9A3-208ENST00000469802 WDR12Q9GZL7 423 aaKnown RBP11.78□□□□□ -0.52
COL9A3-208ENST00000469802 PFDN2Q9UHV9 154 aa11.78□□□□□ -0.52
COL9A3-208ENST00000469802 SYNGR2O43760 224 aa11.77□□□□□ -0.53
COL9A3-208ENST00000469802 DEDDO75618 318 aa11.77□□□□□ -0.53
COL9A3-208ENST00000469802 UBE2MP61081 183 aaKnown RBP11.77□□□□□ -0.53
COL9A3-208ENST00000469802 LYZP61626 148 aa11.77□□□□□ -0.53
COL9A3-208ENST00000469802 CIB3Q96Q77 187 aaPredicted RBP11.77□□□□□ -0.53
COL9A3-208ENST00000469802 C1QTNF4Q9BXJ3 329 aa11.77□□□□□ -0.53
COL9A3-208ENST00000469802 NDUFA13Q9P0J0 144 aa11.77□□□□□ -0.53
COL9A3-208ENST00000469802 DNAH10Q8IVF4 4471 aa11.77□□□□□ -0.53
COL9A3-208ENST00000469802 HLA-DMBP28068 263 aa11.76□□□□□ -0.53
COL9A3-208ENST00000469802 PSMB3P49720 205 aa11.76□□□□□ -0.53
COL9A3-208ENST00000469802 NUTF2P61970 127 aaKnown RBP11.76□□□□□ -0.53
COL9A3-208ENST00000469802 OR2F1Q13607 317 aa11.76□□□□□ -0.53
COL9A3-208ENST00000469802 GDF5OSQ5U4N7 250 aa11.76□□□□□ -0.53
COL9A3-208ENST00000469802 MAGT1Q9H0U3 335 aa11.76□□□□□ -0.53
COL9A3-208ENST00000469802 APLNQ9ULZ1 77 aa11.76□□□□□ -0.53
COL9A3-208ENST00000469802 SNRPGP15A8MWD9 76 aa11.75□□□□□ -0.53
COL9A3-208ENST00000469802 HOXB5P09067 269 aa11.75□□□□□ -0.53
COL9A3-208ENST00000469802 SPANXN2Q5MJ10 180 aa11.75□□□□□ -0.53
COL9A3-208ENST00000469802 GGNBP1Q5YKI7 109 aa11.75□□□□□ -0.53
COL9A3-208ENST00000469802 ZNF705AQ6ZN79 300 aaPredicted RBP11.75□□□□□ -0.53
COL9A3-208ENST00000469802 FOXI2Q6ZQN5 318 aa11.75□□□□□ -0.53
COL9A3-208ENST00000469802 Q6ZTC4 211 aa11.75□□□□□ -0.53
COL9A3-208ENST00000469802 CLUHP3Q96NS8 147 aa11.75□□□□□ -0.53
COL9A3-208ENST00000469802 SAV1Q9H4B6 383 aaPredicted RBP11.75□□□□□ -0.53
COL9A3-208ENST00000469802 XCL2Q9UBD3 114 aa11.75□□□□□ -0.53
COL9A3-208ENST00000469802 CELA1Q9UNI1 258 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms