RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 KCNIP3Q9Y2W7 256 aa15.18■□□□□ 0.02
COL9A3-207ENST00000467819 H3BMM0 161 aa15.17■□□□□ 0.02
COL9A3-207ENST00000467819 CTDSPLO15194 276 aa15.17■□□□□ 0.02
COL9A3-207ENST00000467819 C12orf74Q32Q52 190 aa15.17■□□□□ 0.02
COL9A3-207ENST00000467819 DTD1Q8TEA8 209 aa15.17■□□□□ 0.02
COL9A3-207ENST00000467819 IL22RA2Q969J5 263 aa15.17■□□□□ 0.02
COL9A3-207ENST00000467819 RNF126Q9BV68 326 aa15.17■□□□□ 0.02
COL9A3-207ENST00000467819 PBDC1Q9BVG4 233 aa15.17■□□□□ 0.02
COL9A3-207ENST00000467819 CACFD1Q9UGQ2 172 aa15.17■□□□□ 0.02
COL9A3-207ENST00000467819 DEFB131BA0A096LNP1 70 aa15.16■□□□□ 0.02
COL9A3-207ENST00000467819 LGI3Q8N145 548 aa15.16■□□□□ 0.02
COL9A3-207ENST00000467819 RNF125Q96EQ8 232 aa15.16■□□□□ 0.02
COL9A3-207ENST00000467819 MRPS26Q9BYN8 205 aaKnown RBP15.16■□□□□ 0.02
COL9A3-207ENST00000467819 RBKSQ9H477 322 aa15.16■□□□□ 0.02
COL9A3-207ENST00000467819 SEPSECSQ9HD40 501 aaKnown RBP15.16■□□□□ 0.02
COL9A3-207ENST00000467819 HSPB7Q9UBY9 170 aa15.16■□□□□ 0.02
COL9A3-207ENST00000467819 DNAH2Q9P225 4427 aa15.16■□□□□ 0.02
COL9A3-207ENST00000467819 ANKRD20A5PA0PJZ0 165 aa15.15■□□□□ 0.02
COL9A3-207ENST00000467819 IGKV3-20P01619 116 aa15.15■□□□□ 0.02
COL9A3-207ENST00000467819 HLA-DRB4P13762 266 aa15.15■□□□□ 0.02
COL9A3-207ENST00000467819 AKR1C4P17516 323 aa15.15■□□□□ 0.02
COL9A3-207ENST00000467819 CCR6P51684 374 aa15.15■□□□□ 0.02
COL9A3-207ENST00000467819 DEFB1P60022 68 aa15.15■□□□□ 0.02
COL9A3-207ENST00000467819 KLF9Q13886 244 aaPredicted RBP15.15■□□□□ 0.02
COL9A3-207ENST00000467819 SMCO1Q147U7 214 aa15.15■□□□□ 0.02
COL9A3-207ENST00000467819 LYZL2Q7Z4W2 148 aa15.15■□□□□ 0.02
COL9A3-207ENST00000467819 SCP2D1Q9UJQ7 156 aa15.15■□□□□ 0.02
COL9A3-207ENST00000467819 U3KQ87 197 aa15.15■□□□□ 0.02
COL9A3-207ENST00000467819 HLA-DRB4X5D2U9 266 aa15.15■□□□□ 0.02
COL9A3-207ENST00000467819 FAT2Q9NYQ8 4349 aa15.15■□□□□ 0.02
COL9A3-207ENST00000467819 ZFP92A6NM28 416 aa15.14■□□□□ 0.01
COL9A3-207ENST00000467819 AMBPP02760 352 aa15.14■□□□□ 0.01
COL9A3-207ENST00000467819 NKX2-1P43699 371 aaPredicted RBP15.14■□□□□ 0.01
COL9A3-207ENST00000467819 ALDH3B2P48448 385 aa15.14■□□□□ 0.01
COL9A3-207ENST00000467819 GDF5OSQ5U4N7 250 aa15.14■□□□□ 0.01
COL9A3-207ENST00000467819 SCRT1Q9BWW7 348 aa15.14■□□□□ 0.01
COL9A3-207ENST00000467819 MCUBQ9NWR8 336 aa15.14■□□□□ 0.01
COL9A3-207ENST00000467819 A0A0B4J2A0 478 aa15.13■□□□□ 0.01
COL9A3-207ENST00000467819 NUP62P37198 522 aaPredicted RBP15.13■□□□□ 0.01
COL9A3-207ENST00000467819 FXYD7P58549 80 aa15.13■□□□□ 0.01
COL9A3-207ENST00000467819 SUPT4H1P63272 117 aaKnown RBP15.13■□□□□ 0.01
COL9A3-207ENST00000467819 ZNF90Q03938 601 aa15.13■□□□□ 0.01
COL9A3-207ENST00000467819 LINC00052Q96N35 136 aa15.13■□□□□ 0.01
COL9A3-207ENST00000467819 SCGB3A2Q96PL1 93 aa15.13■□□□□ 0.01
COL9A3-207ENST00000467819 RABL2AQ9UBK7 228 aaPredicted RBP15.13■□□□□ 0.01
COL9A3-207ENST00000467819 SHPKQ9UHJ6 478 aa15.13■□□□□ 0.01
COL9A3-207ENST00000467819 RABL2BQ9UNT1 228 aa15.13■□□□□ 0.01
COL9A3-207ENST00000467819 IGHV3OR16-12A0A075B7B8 117 aa15.12■□□□□ 0.01
COL9A3-207ENST00000467819 LYZP61626 148 aa15.12■□□□□ 0.01
COL9A3-207ENST00000467819 OR8G2PQ6IF36 304 aa15.12■□□□□ 0.01
COL9A3-207ENST00000467819 GSG1LQ6UXU4 331 aa15.12■□□□□ 0.01
COL9A3-207ENST00000467819 OR1S1Q8NH92 325 aa15.12■□□□□ 0.01
COL9A3-207ENST00000467819 DYNC2LI1Q8TCX1 351 aa15.12■□□□□ 0.01
COL9A3-207ENST00000467819 SLC35E1Q96K37 410 aa15.12■□□□□ 0.01
COL9A3-207ENST00000467819 WDR12Q9GZL7 423 aaKnown RBP15.12■□□□□ 0.01
COL9A3-207ENST00000467819 CCDC59Q9P031 241 aaKnown RBP15.12■□□□□ 0.01
COL9A3-207ENST00000467819 PFDN2Q9UHV9 154 aa15.12■□□□□ 0.01
COL9A3-207ENST00000467819 DNAH17Q9UFH2 4485 aa15.11■□□□□ 0.01
COL9A3-207ENST00000467819 IGKV1D-37A0A075B6S9 117 aa15.11■□□□□ 0.01
COL9A3-207ENST00000467819 EMP1P54849 157 aa15.11■□□□□ 0.01
COL9A3-207ENST00000467819 GAMTQ14353 236 aa15.11■□□□□ 0.01
COL9A3-207ENST00000467819 NDUFAF3Q9BU61 184 aa15.11■□□□□ 0.01
COL9A3-207ENST00000467819 KIAA1109Q2LD37 5005 aa15.11■□□□□ 0.01
COL9A3-207ENST00000467819 ANXA3P12429 323 aa15.1■□□□□ 0.01
COL9A3-207ENST00000467819 ZNF705AQ6ZN79 300 aaPredicted RBP15.1■□□□□ 0.01
COL9A3-207ENST00000467819 COQ8AQ8NI60 647 aa15.1■□□□□ 0.01
COL9A3-207ENST00000467819 SAV1Q9H4B6 383 aaPredicted RBP15.1■□□□□ 0.01
COL9A3-207ENST00000467819 RSL24D1Q9UHA3 163 aaKnown RBP15.1■□□□□ 0.01
COL9A3-207ENST00000467819 GPX4P36969 197 aaPredicted RBP15.09■□□□□ 0.01
COL9A3-207ENST00000467819 ID1P41134 155 aa15.09■□□□□ 0.01
COL9A3-207ENST00000467819 SRPXP78539 464 aa15.09■□□□□ 0.01
COL9A3-207ENST00000467819 OR2F1Q13607 317 aa15.09■□□□□ 0.01
COL9A3-207ENST00000467819 OR4B1Q8NGF8 309 aa15.09■□□□□ 0.01
COL9A3-207ENST00000467819 RAB2BQ8WUD1 216 aa15.09■□□□□ 0.01
COL9A3-207ENST00000467819 PPP1R14BQ96C90 147 aa15.09■□□□□ 0.01
COL9A3-207ENST00000467819 NEU1Q99519 415 aa15.09■□□□□ 0.01
COL9A3-207ENST00000467819 ZNF705FA8MVS1 300 aaPredicted RBP15.08■□□□□ 0
COL9A3-207ENST00000467819 ZNF705DP0CH99 300 aaPredicted RBP15.08■□□□□ 0
COL9A3-207ENST00000467819 ZNF705BP0CI00 300 aaPredicted RBP15.08■□□□□ 0
COL9A3-207ENST00000467819 SPART-AS1P0CW21 52 aa15.08■□□□□ 0
COL9A3-207ENST00000467819 P0DMU3 169 aa15.08■□□□□ 0
COL9A3-207ENST00000467819 FAM231AP0DMU4 169 aa15.08■□□□□ 0
COL9A3-207ENST00000467819 FAM231CP0DMU5 169 aa15.08■□□□□ 0
COL9A3-207ENST00000467819 IAPPP10997 89 aa15.08■□□□□ 0
COL9A3-207ENST00000467819 PSMB3P49720 205 aa15.08■□□□□ 0
COL9A3-207ENST00000467819 FOXI2Q6ZQN5 318 aa15.08■□□□□ 0
COL9A3-207ENST00000467819 LINC00336Q6ZUF6 198 aa15.08■□□□□ 0
COL9A3-207ENST00000467819 POM121L12Q8N7R1 296 aa15.08■□□□□ 0
COL9A3-207ENST00000467819 PAIP2BQ9ULR5 123 aaKnown RBP15.08■□□□□ 0
COL9A3-207ENST00000467819 PKHD1P08F94 4074 aa15.07■□□□□ 0
COL9A3-207ENST00000467819 FABP1P07148 127 aa15.07■□□□□ 0
COL9A3-207ENST00000467819 ATP5IP56385 69 aaPredicted RBP15.07■□□□□ 0
COL9A3-207ENST00000467819 TMED4Q7Z7H5 227 aa15.07■□□□□ 0
COL9A3-207ENST00000467819 SLC35B3Q9H1N7 401 aa15.07■□□□□ 0
COL9A3-207ENST00000467819 TMEM189A5PLL7 270 aa15.06■□□□□ 0
COL9A3-207ENST00000467819 M0R2N4 97 aa15.06■□□□□ 0
COL9A3-207ENST00000467819 SOCS3O14543 225 aa15.06■□□□□ 0
COL9A3-207ENST00000467819 C1orf194Q5T5A4 169 aa15.06■□□□□ 0
COL9A3-207ENST00000467819 OR8I2Q8N0Y5 310 aa15.06■□□□□ 0
COL9A3-207ENST00000467819 ZNF709Q8N972 641 aa15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 127.7 ms