RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 SPATA25Q9BR10 227 aa9.73□□□□□ -0.85
COL28A1-206ENST00000465339 WFDC10AQ9H1F0 79 aa9.73□□□□□ -0.85
COL28A1-206ENST00000465339 PAIP2BQ9ULR5 123 aaKnown RBP9.73□□□□□ -0.85
COL28A1-206ENST00000465339 STRAPQ9Y3F4 350 aaKnown RBP9.73□□□□□ -0.85
COL28A1-206ENST00000465339 RBMY1BA6NDE4 496 aaKnown RBP9.72□□□□□ -0.85
COL28A1-206ENST00000465339 RBMY1EA6NEQ0 496 aaKnown RBP9.72□□□□□ -0.85
COL28A1-206ENST00000465339 FABP1P07148 127 aa9.72□□□□□ -0.85
COL28A1-206ENST00000465339 RBMY1DP0C7P1 496 aaKnown RBP9.72□□□□□ -0.85
COL28A1-206ENST00000465339 IAH1Q2TAA2 248 aaPredicted RBP9.72□□□□□ -0.85
COL28A1-206ENST00000465339 SPANXN5Q5MJ07 72 aa9.72□□□□□ -0.85
COL28A1-206ENST00000465339 ZBTB8BQ8NAP8 495 aaPredicted RBP9.72□□□□□ -0.85
COL28A1-206ENST00000465339 GRAMD2BQ96HH9 432 aa9.72□□□□□ -0.85
COL28A1-206ENST00000465339 SMIM8Q96KF7 97 aa9.72□□□□□ -0.85
COL28A1-206ENST00000465339 TENM3Q9P273 2699 aa9.72□□□□□ -0.85
COL28A1-206ENST00000465339 TRAV2A0A0B4J234 112 aa9.71□□□□□ -0.86
COL28A1-206ENST00000465339 ZFP92A6NM28 416 aa9.71□□□□□ -0.86
COL28A1-206ENST00000465339 DFFBO76075 338 aa9.71□□□□□ -0.86
COL28A1-206ENST00000465339 HNRNPCP07910 306 aaKnown RBP eCLIP9.71□□□□□ -0.86
COL28A1-206ENST00000465339 PSG1P11464 419 aa9.71□□□□□ -0.86
COL28A1-206ENST00000465339 POLR2GP62487 172 aaKnown RBP eCLIP9.71□□□□□ -0.86
COL28A1-206ENST00000465339 C12orf45Q8N5I9 185 aaPredicted RBP9.71□□□□□ -0.86
COL28A1-206ENST00000465339 OR51G1Q8NGK1 321 aa9.71□□□□□ -0.86
COL28A1-206ENST00000465339 RAB40CQ96S21 281 aa9.71□□□□□ -0.86
COL28A1-206ENST00000465339 PSENENQ9NZ42 101 aa9.71□□□□□ -0.86
COL28A1-206ENST00000465339 GSKIPQ9P0R6 139 aa9.71□□□□□ -0.86
COL28A1-206ENST00000465339 U3KQE9 123 aa9.71□□□□□ -0.86
COL28A1-206ENST00000465339 NBEAL2Q6ZNJ1 2754 aa9.71□□□□□ -0.86
COL28A1-206ENST00000465339 IGKV3-7A0A075B6H7 116 aa9.7□□□□□ -0.86
COL28A1-206ENST00000465339 LOC102724200A0A096LPH7 203 aaPredicted RBP9.7□□□□□ -0.86
COL28A1-206ENST00000465339 IGHV3-66A0A0C4DH42 116 aa9.7□□□□□ -0.86
COL28A1-206ENST00000465339 PRSS46E5RG02 174 aa9.7□□□□□ -0.86
COL28A1-206ENST00000465339 DNASE2O00115 360 aaPredicted RBP9.7□□□□□ -0.86
COL28A1-206ENST00000465339 IL4P05112 153 aa9.7□□□□□ -0.86
COL28A1-206ENST00000465339 IL5P05113 134 aa9.7□□□□□ -0.86
COL28A1-206ENST00000465339 P2RY1P47900 373 aa9.7□□□□□ -0.86
COL28A1-206ENST00000465339 EIF2B2P49770 351 aaKnown RBP9.7□□□□□ -0.86
COL28A1-206ENST00000465339 AP2S1P53680 142 aaPredicted RBP9.7□□□□□ -0.86
COL28A1-206ENST00000465339 TAS2R30P59541 319 aa9.7□□□□□ -0.86
COL28A1-206ENST00000465339 RPL11P62913 178 aaKnown RBP9.7□□□□□ -0.86
COL28A1-206ENST00000465339 ODF3L2Q3SX64 289 aa9.7□□□□□ -0.86
COL28A1-206ENST00000465339 ENKURQ8TC29 256 aa9.7□□□□□ -0.86
COL28A1-206ENST00000465339 TRGV9Q99603 122 aa9.7□□□□□ -0.86
COL28A1-206ENST00000465339 SEC22CQ9BRL7 303 aa9.7□□□□□ -0.86
COL28A1-206ENST00000465339 GGTLC1Q9BX51 225 aa9.7□□□□□ -0.86
COL28A1-206ENST00000465339 UBQLN2Q9UHD9 624 aa9.7□□□□□ -0.86
COL28A1-206ENST00000465339 IGKV1D-37A0A075B6S9 117 aa9.69□□□□□ -0.86
COL28A1-206ENST00000465339 HELTA6NFD8 242 aa9.69□□□□□ -0.86
COL28A1-206ENST00000465339 SNRPGP15A8MWD9 76 aa9.69□□□□□ -0.86
COL28A1-206ENST00000465339 H3BP45 60 aa9.69□□□□□ -0.86
COL28A1-206ENST00000465339 SSSCA1O60232 199 aa9.69□□□□□ -0.86
COL28A1-206ENST00000465339 SCGB1D2O95969 90 aa9.69□□□□□ -0.86
COL28A1-206ENST00000465339 CFDP00746 253 aaPredicted RBP9.69□□□□□ -0.86
COL28A1-206ENST00000465339 TFPI2P48307 235 aa9.69□□□□□ -0.86
COL28A1-206ENST00000465339 DEFA1P59665 94 aa9.69□□□□□ -0.86
COL28A1-206ENST00000465339 DEFA3P59666 94 aa9.69□□□□□ -0.86
COL28A1-206ENST00000465339 IFITM3Q01628 133 aa9.69□□□□□ -0.86
COL28A1-206ENST00000465339 USF2Q15853 346 aaPredicted RBP9.69□□□□□ -0.86
COL28A1-206ENST00000465339 GBGT1Q8N5D6 347 aa9.69□□□□□ -0.86
COL28A1-206ENST00000465339 THAP8Q8NA92 274 aa9.69□□□□□ -0.86
COL28A1-206ENST00000465339 RNF125Q96EQ8 232 aa9.69□□□□□ -0.86
COL28A1-206ENST00000465339 MS4A6AQ9H2W1 248 aa9.69□□□□□ -0.86
COL28A1-206ENST00000465339 GPN1Q9HCN4 374 aaPredicted RBP9.69□□□□□ -0.86
COL28A1-206ENST00000465339 RABAC1Q9UI14 185 aa9.69□□□□□ -0.86
COL28A1-206ENST00000465339 C5orf51A6NDU8 294 aa9.68□□□□□ -0.86
COL28A1-206ENST00000465339 TSC22D2O75157 780 aa9.68□□□□□ -0.86
COL28A1-206ENST00000465339 NUP62P37198 522 aaPredicted RBP9.68□□□□□ -0.86
COL28A1-206ENST00000465339 PAX9P55771 341 aa9.68□□□□□ -0.86
COL28A1-206ENST00000465339 ZNF90Q03938 601 aa9.68□□□□□ -0.86
COL28A1-206ENST00000465339 ANKRD39Q53RE8 183 aa9.68□□□□□ -0.86
COL28A1-206ENST00000465339 OR8G2PQ6IF36 304 aa9.68□□□□□ -0.86
COL28A1-206ENST00000465339 C16orf54Q6UWD8 224 aa9.68□□□□□ -0.86
COL28A1-206ENST00000465339 IGKV1OR2-108A0A075B7D4 117 aa9.67□□□□□ -0.86
COL28A1-206ENST00000465339 FAM25EA8MYX2 175 aa9.67□□□□□ -0.86
COL28A1-206ENST00000465339 CCSO14618 274 aa9.67□□□□□ -0.86
COL28A1-206ENST00000465339 BUB3O43684 328 aa9.67□□□□□ -0.86
COL28A1-206ENST00000465339 MBPP02686 304 aaPredicted RBP9.67□□□□□ -0.86
COL28A1-206ENST00000465339 APOC4P55056 127 aa9.67□□□□□ -0.86
COL28A1-206ENST00000465339 TMEM14EPQ6UXP3 125 aa9.67□□□□□ -0.86
COL28A1-206ENST00000465339 GSG1LQ6UXU4 331 aa9.67□□□□□ -0.86
COL28A1-206ENST00000465339 TMEM144Q7Z5S9 345 aa9.67□□□□□ -0.86
COL28A1-206ENST00000465339 NRARPQ7Z6K4 114 aa9.67□□□□□ -0.86
COL28A1-206ENST00000465339 WFDC3Q8IUB2 231 aa9.67□□□□□ -0.86
COL28A1-206ENST00000465339 GLMPQ8WWB7 406 aa9.67□□□□□ -0.86
COL28A1-206ENST00000465339 C2orf50Q96LR7 162 aa9.67□□□□□ -0.86
COL28A1-206ENST00000465339 MAP6D1Q9H9H5 199 aa9.67□□□□□ -0.86
COL28A1-206ENST00000465339 KIR2DL5BA0A0G2JN68 375 aa9.66□□□□□ -0.86
COL28A1-206ENST00000465339 KIR2DL5BA0A0G2JPC4 375 aa9.66□□□□□ -0.86
COL28A1-206ENST00000465339 C7orf66A4D0T2 115 aa9.66□□□□□ -0.86
COL28A1-206ENST00000465339 PMS2P5A8MQ11 134 aa9.66□□□□□ -0.86
COL28A1-206ENST00000465339 FNDC10F2Z333 226 aa9.66□□□□□ -0.86
COL28A1-206ENST00000465339 L7N2F9 121 aa9.66□□□□□ -0.86
COL28A1-206ENST00000465339 UBE2CO00762 179 aa9.66□□□□□ -0.86
COL28A1-206ENST00000465339 PRAF2O60831 178 aa9.66□□□□□ -0.86
COL28A1-206ENST00000465339 VAMP2P63027 116 aa9.66□□□□□ -0.86
COL28A1-206ENST00000465339 AKR1C1Q04828 323 aa9.66□□□□□ -0.86
COL28A1-206ENST00000465339 APRG1Q8IVJ8 170 aa9.66□□□□□ -0.86
COL28A1-206ENST00000465339 KIR2DL5AQ8N109 375 aa9.66□□□□□ -0.86
COL28A1-206ENST00000465339 STXBP6Q8NFX7 210 aa9.66□□□□□ -0.86
COL28A1-206ENST00000465339 OR10P1Q8NGE3 313 aa9.66□□□□□ -0.86
COL28A1-206ENST00000465339 KIR2DL5BQ8NHK3 375 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms