RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 SMPXQ9UHP9 88 aa13.34□□□□□ -0.27
COL7A1-205ENST00000465238 IGHV7-4-1A0A0J9YVY3 117 aa13.33□□□□□ -0.28
COL7A1-205ENST00000465238 DEDDO75618 318 aa13.33□□□□□ -0.28
COL7A1-205ENST00000465238 SCAF4O95104 1147 aaKnown RBP13.33□□□□□ -0.28
COL7A1-205ENST00000465238 TOMM40O96008 361 aa13.33□□□□□ -0.28
COL7A1-205ENST00000465238 NPPCP23582 126 aa13.33□□□□□ -0.28
COL7A1-205ENST00000465238 RRAS2P62070 204 aaPredicted RBP13.33□□□□□ -0.28
COL7A1-205ENST00000465238 THAP8Q8NA92 274 aa13.33□□□□□ -0.28
COL7A1-205ENST00000465238 LYRM2Q9NU23 88 aaPredicted RBP13.33□□□□□ -0.28
COL7A1-205ENST00000465238 SELENOKQ9Y6D0 94 aa13.33□□□□□ -0.28
COL7A1-205ENST00000465238 IGHV3-49A0A0A0MS15 119 aa13.32□□□□□ -0.28
COL7A1-205ENST00000465238 E5RGE8 158 aa13.32□□□□□ -0.28
COL7A1-205ENST00000465238 BMI1P35226 326 aa13.32□□□□□ -0.28
COL7A1-205ENST00000465238 RBPMS2Q6ZRY4 209 aaKnown RBP13.32□□□□□ -0.28
COL7A1-205ENST00000465238 GTSCR1Q86UQ5 136 aa13.32□□□□□ -0.28
COL7A1-205ENST00000465238 PPP1R1CQ8WVI7 109 aa13.32□□□□□ -0.28
COL7A1-205ENST00000465238 WDR89Q96FK6 387 aaPredicted RBP13.32□□□□□ -0.28
COL7A1-205ENST00000465238 METTL26Q96S19 204 aa13.32□□□□□ -0.28
COL7A1-205ENST00000465238 TRGV9Q99603 122 aa13.32□□□□□ -0.28
COL7A1-205ENST00000465238 RHPN1-AS1Q9BWJ2 59 aa13.32□□□□□ -0.28
COL7A1-205ENST00000465238 IGKV1D-37A0A075B6S9 117 aa13.31□□□□□ -0.28
COL7A1-205ENST00000465238 IZUMO1RA6ND01 250 aa13.31□□□□□ -0.28
COL7A1-205ENST00000465238 FNDC10F2Z333 226 aa13.31□□□□□ -0.28
COL7A1-205ENST00000465238 CST7O76096 145 aa13.31□□□□□ -0.28
COL7A1-205ENST00000465238 IL4P05112 153 aa13.31□□□□□ -0.28
COL7A1-205ENST00000465238 PET100P0DJ07 73 aa13.31□□□□□ -0.28
COL7A1-205ENST00000465238 PSG1P11464 419 aa13.31□□□□□ -0.28
COL7A1-205ENST00000465238 CXCL3P19876 107 aa13.31□□□□□ -0.28
COL7A1-205ENST00000465238 ZNF90Q03938 601 aa13.31□□□□□ -0.28
COL7A1-205ENST00000465238 FCN2Q15485 313 aa13.31□□□□□ -0.28
COL7A1-205ENST00000465238 GUCA2BQ16661 112 aa13.31□□□□□ -0.28
COL7A1-205ENST00000465238 LAMTOR1Q6IAA8 161 aa13.31□□□□□ -0.28
COL7A1-205ENST00000465238 TMEM144Q7Z5S9 345 aa13.31□□□□□ -0.28
COL7A1-205ENST00000465238 STX12Q86Y82 276 aa13.31□□□□□ -0.28
COL7A1-205ENST00000465238 OR51G1Q8NGK1 321 aa13.31□□□□□ -0.28
COL7A1-205ENST00000465238 NARS2Q96I59 477 aaKnown RBP13.31□□□□□ -0.28
COL7A1-205ENST00000465238 SPATA25Q9BR10 227 aa13.31□□□□□ -0.28
COL7A1-205ENST00000465238 GGACTQ9BVM4 153 aa13.31□□□□□ -0.28
COL7A1-205ENST00000465238 NPVFQ9HCQ7 196 aa13.31□□□□□ -0.28
COL7A1-205ENST00000465238 RYR2Q92736 4967 aa13.31□□□□□ -0.28
COL7A1-205ENST00000465238 CSMD3Q7Z407 3707 aa13.31□□□□□ -0.28
COL7A1-205ENST00000465238 IGHV3OR16-13A0A075B7E8 117 aa13.3□□□□□ -0.28
COL7A1-205ENST00000465238 IGHV3-74A0A0B4J1X5 117 aa13.3□□□□□ -0.28
COL7A1-205ENST00000465238 TRAV25A0A0B4J276 109 aa13.3□□□□□ -0.28
COL7A1-205ENST00000465238 CHEK1O14757 476 aa13.3□□□□□ -0.28
COL7A1-205ENST00000465238 P2RY1P47900 373 aa13.3□□□□□ -0.28
COL7A1-205ENST00000465238 SULT1A1P50225 295 aa13.3□□□□□ -0.28
COL7A1-205ENST00000465238 SLC38A11Q08AI6 406 aa13.3□□□□□ -0.28
COL7A1-205ENST00000465238 ARL16Q0P5N6 197 aa13.3□□□□□ -0.28
COL7A1-205ENST00000465238 OR2F1Q13607 317 aa13.3□□□□□ -0.28
COL7A1-205ENST00000465238 TMEM61Q8N0U2 210 aa13.3□□□□□ -0.28
COL7A1-205ENST00000465238 TMEM252Q8N6L7 170 aa13.3□□□□□ -0.28
COL7A1-205ENST00000465238 TMEM217Q8N7C4 229 aa13.3□□□□□ -0.28
COL7A1-205ENST00000465238 SLC25A31Q9H0C2 315 aa13.3□□□□□ -0.28
COL7A1-205ENST00000465238 TMEM231Q9H6L2 316 aa13.3□□□□□ -0.28
COL7A1-205ENST00000465238 EDA2RQ9HAV5 297 aa13.3□□□□□ -0.28
COL7A1-205ENST00000465238 OR5AC2Q9NZP5 309 aa13.3□□□□□ -0.28
COL7A1-205ENST00000465238 SACSQ9NZJ4 4579 aa13.29□□□□□ -0.28
COL7A1-205ENST00000465238 IGKV1OR2-108A0A075B7D4 117 aa13.29□□□□□ -0.28
COL7A1-205ENST00000465238 A0A1W2PS18 150 aa13.29□□□□□ -0.28
COL7A1-205ENST00000465238 IGSF23A1L1A6 192 aa13.29□□□□□ -0.28
COL7A1-205ENST00000465238 ZNF785A8K8V0 405 aa13.29□□□□□ -0.28
COL7A1-205ENST00000465238 H0YIZ8 118 aa13.29□□□□□ -0.28
COL7A1-205ENST00000465238 MPC2O95563 127 aa13.29□□□□□ -0.28
COL7A1-205ENST00000465238 HBG1P69891 147 aa13.29□□□□□ -0.28
COL7A1-205ENST00000465238 HBG2P69892 147 aa13.29□□□□□ -0.28
COL7A1-205ENST00000465238 HAGHQ16775 308 aa13.29□□□□□ -0.28
COL7A1-205ENST00000465238 OR11H7Q8NGC8 314 aa13.29□□□□□ -0.28
COL7A1-205ENST00000465238 RNF125Q96EQ8 232 aa13.29□□□□□ -0.28
COL7A1-205ENST00000465238 TUBA4BQ9H853 241 aa13.29□□□□□ -0.28
COL7A1-205ENST00000465238 CFDP00746 253 aaPredicted RBP13.28□□□□□ -0.28
COL7A1-205ENST00000465238 HNRNPCP07910 306 aaKnown RBP eCLIP13.28□□□□□ -0.28
COL7A1-205ENST00000465238 CRYBB3P26998 211 aa13.28□□□□□ -0.28
COL7A1-205ENST00000465238 S100A11P31949 105 aa13.28□□□□□ -0.28
COL7A1-205ENST00000465238 TEPPQ6URK8 271 aa13.28□□□□□ -0.28
COL7A1-205ENST00000465238 LILRB2Q8N423 598 aa13.28□□□□□ -0.28
COL7A1-205ENST00000465238 ST8SIA2Q92186 375 aa13.28□□□□□ -0.28
COL7A1-205ENST00000465238 GRAMD2BQ96HH9 432 aa13.28□□□□□ -0.28
COL7A1-205ENST00000465238 RNF2Q99496 336 aa13.28□□□□□ -0.28
COL7A1-205ENST00000465238 PBDC1Q9BVG4 233 aa13.28□□□□□ -0.28
COL7A1-205ENST00000465238 RABAC1Q9UI14 185 aa13.28□□□□□ -0.28
COL7A1-205ENST00000465238 IGHV3-66A0A0C4DH42 116 aa13.27□□□□□ -0.29
COL7A1-205ENST00000465238 APOHP02749 345 aaPredicted RBP13.27□□□□□ -0.29
COL7A1-205ENST00000465238 CD5P06127 495 aa13.27□□□□□ -0.29
COL7A1-205ENST00000465238 USF2Q15853 346 aaPredicted RBP13.27□□□□□ -0.29
COL7A1-205ENST00000465238 BPIFCQ8NFQ6 507 aa13.27□□□□□ -0.29
COL7A1-205ENST00000465238 LYSTQ99698 3801 aa13.27□□□□□ -0.29
COL7A1-205ENST00000465238 RNF126Q9BV68 326 aa13.27□□□□□ -0.29
COL7A1-205ENST00000465238 VSIRQ9H7M9 311 aa13.27□□□□□ -0.29
COL7A1-205ENST00000465238 PFDN2Q9UHV9 154 aa13.27□□□□□ -0.29
COL7A1-205ENST00000465238 STARD9Q9P2P6 4700 aa13.27□□□□□ -0.29
COL7A1-205ENST00000465238 LCE6AA0A183 80 aa13.26□□□□□ -0.29
COL7A1-205ENST00000465238 TSPAN4O14817 238 aa13.26□□□□□ -0.29
COL7A1-205ENST00000465238 LYZP61626 148 aa13.26□□□□□ -0.29
COL7A1-205ENST00000465238 ATP6V1FQ16864 119 aa13.26□□□□□ -0.29
COL7A1-205ENST00000465238 ZFAND6Q6FIF0 208 aa13.26□□□□□ -0.29
COL7A1-205ENST00000465238 CYP2G1PQ6ZSU1 146 aa13.26□□□□□ -0.29
COL7A1-205ENST00000465238 THAP6Q8TBB0 222 aa13.26□□□□□ -0.29
COL7A1-205ENST00000465238 UQCC1Q9NVA1 299 aa13.26□□□□□ -0.29
COL7A1-205ENST00000465238 EIF2B2P49770 351 aaKnown RBP13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 80.8 ms