RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 HES5Q5TA89 166 aa1.48□□□□□ -2.17
USP40-211ENST00000464956 KCNIP4Q6PIL6 250 aa1.48□□□□□ -2.17
USP40-211ENST00000464956 ATRAIDQ6UW56 229 aa1.48□□□□□ -2.17
USP40-211ENST00000464956 SLC35F2Q8IXU6 374 aa1.48□□□□□ -2.17
USP40-211ENST00000464956 Q8N3U1 123 aa1.48□□□□□ -2.17
USP40-211ENST00000464956 MNS1Q8NEH6 495 aa1.48□□□□□ -2.17
USP40-211ENST00000464956 OR2T12Q8NG77 320 aa1.48□□□□□ -2.17
USP40-211ENST00000464956 OR8J3Q8NGG0 315 aa1.48□□□□□ -2.17
USP40-211ENST00000464956 OR1L8Q8NGR8 309 aa1.48□□□□□ -2.17
USP40-211ENST00000464956 OR52I2Q8NH67 350 aa1.48□□□□□ -2.17
USP40-211ENST00000464956 TYMSOSQ8TAI1 123 aa1.48□□□□□ -2.17
USP40-211ENST00000464956 SUN5Q8TC36 379 aa1.48□□□□□ -2.17
USP40-211ENST00000464956 TMEM56Q96MV1 263 aa1.48□□□□□ -2.17
USP40-211ENST00000464956 TEX12Q9BXU0 123 aa1.48□□□□□ -2.17
USP40-211ENST00000464956 PECRQ9BY49 303 aa1.48□□□□□ -2.17
USP40-211ENST00000464956 SELENOIQ9C0D9 397 aa1.48□□□□□ -2.17
USP40-211ENST00000464956 PPCSQ9HAB8 311 aa1.48□□□□□ -2.17
USP40-211ENST00000464956 EHFQ9NZC4 300 aa1.48□□□□□ -2.17
USP40-211ENST00000464956 KLK12Q9UKR0 248 aa1.48□□□□□ -2.17
USP40-211ENST00000464956 MUC17Q685J3 4493 aa1.48□□□□□ -2.17
USP40-211ENST00000464956 TRAV30A0A087WSZ9 112 aa1.47□□□□□ -2.17
USP40-211ENST00000464956 TRBV5-5A0A0J9YX44 114 aa1.47□□□□□ -2.17
USP40-211ENST00000464956 PGPA6NDG6 321 aa1.47□□□□□ -2.17
USP40-211ENST00000464956 H3BN98 237 aa1.47□□□□□ -2.17
USP40-211ENST00000464956 UPK2O00526 184 aa1.47□□□□□ -2.17
USP40-211ENST00000464956 GSTA4O15217 222 aa1.47□□□□□ -2.17
USP40-211ENST00000464956 BIRC5O15392 142 aa1.47□□□□□ -2.17
USP40-211ENST00000464956 CRTAPO75718 401 aaPredicted RBP1.47□□□□□ -2.17
USP40-211ENST00000464956 DIRAS1O95057 198 aa1.47□□□□□ -2.17
USP40-211ENST00000464956 LALBAP00709 142 aa1.47□□□□□ -2.17
USP40-211ENST00000464956 TSHBP01222 138 aa1.47□□□□□ -2.17
USP40-211ENST00000464956 CRPP02741 224 aa1.47□□□□□ -2.17
USP40-211ENST00000464956 IGLV7-43P04211 117 aa1.47□□□□□ -2.17
USP40-211ENST00000464956 HMGN1P05114 100 aa1.47□□□□□ -2.17
USP40-211ENST00000464956 RPSAP08865 295 aaKnown RBP1.47□□□□□ -2.17
USP40-211ENST00000464956 HSD17B1P14061 328 aa1.47□□□□□ -2.17
USP40-211ENST00000464956 SLC2A5P22732 501 aa1.47□□□□□ -2.17
USP40-211ENST00000464956 FCGR2CP31995 323 aa1.47□□□□□ -2.17
USP40-211ENST00000464956 POLR2GP62487 172 aaKnown RBP eCLIP1.47□□□□□ -2.17
USP40-211ENST00000464956 PPP3R1P63098 170 aa1.47□□□□□ -2.17
USP40-211ENST00000464956 CTAG1AP78358 180 aa1.47□□□□□ -2.17
USP40-211ENST00000464956 CYCSP99999 105 aaKnown RBP1.47□□□□□ -2.17
USP40-211ENST00000464956 HIST1H1AQ02539 215 aaPredicted RBP1.47□□□□□ -2.17
USP40-211ENST00000464956 GLYATQ6IB77 296 aa1.47□□□□□ -2.17
USP40-211ENST00000464956 C10orf67Q8IYJ2 551 aa1.47□□□□□ -2.17
USP40-211ENST00000464956 SYS1Q8N2H4 156 aa1.47□□□□□ -2.17
USP40-211ENST00000464956 SPATA4Q8NEY3 305 aa1.47□□□□□ -2.17
USP40-211ENST00000464956 OR51A4Q8NGJ6 313 aa1.47□□□□□ -2.17
USP40-211ENST00000464956 OR10J5Q8NHC4 309 aa1.47□□□□□ -2.17
USP40-211ENST00000464956 Q8WTZ3 238 aa1.47□□□□□ -2.17
USP40-211ENST00000464956 TCTEX1D2Q8WW35 142 aa1.47□□□□□ -2.17
USP40-211ENST00000464956 SEC22AQ96IW7 307 aa1.47□□□□□ -2.17
USP40-211ENST00000464956 ZNF479Q96JC4 524 aa1.47□□□□□ -2.17
USP40-211ENST00000464956 DNAJC30Q96LL9 226 aa1.47□□□□□ -2.17
USP40-211ENST00000464956 C20orf173Q96LM9 149 aa1.47□□□□□ -2.17
USP40-211ENST00000464956 OPRPNQ99935 248 aaPredicted RBP1.47□□□□□ -2.17
USP40-211ENST00000464956 PYGO2Q9BRQ0 406 aa1.47□□□□□ -2.17
USP40-211ENST00000464956 CENPOQ9BU64 300 aa1.47□□□□□ -2.17
USP40-211ENST00000464956 SAMD10Q9BYL1 202 aa1.47□□□□□ -2.17
USP40-211ENST00000464956 KRTAP9-3Q9BYQ3 159 aa1.47□□□□□ -2.17
USP40-211ENST00000464956 GTSF1LQ9H1H1 148 aa1.47□□□□□ -2.17
USP40-211ENST00000464956 DCSTAMPQ9H295 470 aa1.47□□□□□ -2.17
USP40-211ENST00000464956 BANF2Q9H503 90 aa1.47□□□□□ -2.17
USP40-211ENST00000464956 RPP21Q9H633 154 aaKnown RBP1.47□□□□□ -2.17
USP40-211ENST00000464956 NDUFA4L2Q9NRX3 87 aa1.47□□□□□ -2.17
USP40-211ENST00000464956 CLN6Q9NWW5 311 aa1.47□□□□□ -2.17
USP40-211ENST00000464956 MRPL16Q9NX20 251 aaKnown RBP1.47□□□□□ -2.17
USP40-211ENST00000464956 PKIGQ9Y2B9 76 aa1.47□□□□□ -2.17
USP40-211ENST00000464956 SAR1BQ9Y6B6 198 aa1.47□□□□□ -2.17
USP40-211ENST00000464956 A0A087WX48 190 aa1.46□□□□□ -2.18
USP40-211ENST00000464956 TRBV6-6A0A0A6YYG2 114 aa1.46□□□□□ -2.18
USP40-211ENST00000464956 LOC100131303A0A0U1RQF7 123 aa1.46□□□□□ -2.18
USP40-211ENST00000464956 TEX50A0A1B0GTY4 177 aa1.46□□□□□ -2.18
USP40-211ENST00000464956 BET1O15155 118 aa1.46□□□□□ -2.18
USP40-211ENST00000464956 HPRT1P00492 218 aa1.46□□□□□ -2.18
USP40-211ENST00000464956 GASTP01350 101 aa1.46□□□□□ -2.18
USP40-211ENST00000464956 IL4P05112 153 aa1.46□□□□□ -2.18
USP40-211ENST00000464956 FCGR3AP08637 254 aa1.46□□□□□ -2.18
USP40-211ENST00000464956 SFTA3P0C7M3 94 aa1.46□□□□□ -2.18
USP40-211ENST00000464956 PTHLHP12272 177 aa1.46□□□□□ -2.18
USP40-211ENST00000464956 DCKP27707 260 aa1.46□□□□□ -2.18
USP40-211ENST00000464956 TCL1AP56279 114 aa1.46□□□□□ -2.18
USP40-211ENST00000464956 KRTAP10-10P60014 251 aa1.46□□□□□ -2.18
USP40-211ENST00000464956 C1orf194Q5T5A4 169 aa1.46□□□□□ -2.18
USP40-211ENST00000464956 GLIPR1L1Q6UWM5 242 aa1.46□□□□□ -2.18
USP40-211ENST00000464956 NIT1Q86X76 327 aa1.46□□□□□ -2.18
USP40-211ENST00000464956 C11orf72Q8NBR9 251 aa1.46□□□□□ -2.18
USP40-211ENST00000464956 ZNF738Q8NE65 137 aa1.46□□□□□ -2.18
USP40-211ENST00000464956 SLC24A4Q8NFF2 622 aa1.46□□□□□ -2.18
USP40-211ENST00000464956 OR9Q2Q8NGE9 314 aa1.46□□□□□ -2.18
USP40-211ENST00000464956 OR4A4PQ8NGN8 299 aa1.46□□□□□ -2.18
USP40-211ENST00000464956 FAM162AQ96A26 154 aa1.46□□□□□ -2.18
USP40-211ENST00000464956 HSD17B10Q99714 261 aaKnown RBP1.46□□□□□ -2.18
USP40-211ENST00000464956 GINS4Q9BRT9 223 aa1.46□□□□□ -2.18
USP40-211ENST00000464956 PRADC1Q9BSG0 188 aa1.46□□□□□ -2.18
USP40-211ENST00000464956 FAAP24Q9BTP7 215 aa1.46□□□□□ -2.18
USP40-211ENST00000464956 TMEM138Q9NPI0 162 aa1.46□□□□□ -2.18
USP40-211ENST00000464956 FRRS1LQ9P0K9 344 aa1.46□□□□□ -2.18
USP40-211ENST00000464956 GNG8Q9UK08 70 aa1.46□□□□□ -2.18
USP40-211ENST00000464956 KLF12Q9Y4X4 402 aa1.46□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms