RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 OR4C16Q8NGL9 310 aa11.57□□□□□ -0.56
COL7A1-204ENST00000462475 RAB2BQ8WUD1 216 aa11.57□□□□□ -0.56
COL7A1-204ENST00000462475 SMIM4Q8WVI0 70 aa11.57□□□□□ -0.56
COL7A1-204ENST00000462475 BCL7BQ9BQE9 202 aa11.57□□□□□ -0.56
COL7A1-204ENST00000462475 GPR132Q9UNW8 380 aa11.57□□□□□ -0.56
COL7A1-204ENST00000462475 TMEM56-RWDD3S4R434 201 aa11.57□□□□□ -0.56
COL7A1-204ENST00000462475 DNAH11Q96DT5 4516 aa11.57□□□□□ -0.56
COL7A1-204ENST00000462475 DISC1C4P0D8 188 aa11.56□□□□□ -0.56
COL7A1-204ENST00000462475 CTDSP2O14595 271 aa11.56□□□□□ -0.56
COL7A1-204ENST00000462475 RGS5O15539 181 aa11.56□□□□□ -0.56
COL7A1-204ENST00000462475 RD3LP0DJH9 198 aa11.56□□□□□ -0.56
COL7A1-204ENST00000462475 PSG1P11464 419 aa11.56□□□□□ -0.56
COL7A1-204ENST00000462475 DEFB1P60022 68 aa11.56□□□□□ -0.56
COL7A1-204ENST00000462475 MRPS10P82664 201 aaKnown RBP11.56□□□□□ -0.56
COL7A1-204ENST00000462475 ETFRF1Q6IPR1 90 aa11.56□□□□□ -0.56
COL7A1-204ENST00000462475 OR51G1Q8NGK1 321 aa11.56□□□□□ -0.56
COL7A1-204ENST00000462475 C1QTNF4Q9BXJ3 329 aa11.56□□□□□ -0.56
COL7A1-204ENST00000462475 SEPSECSQ9HD40 501 aaKnown RBP11.56□□□□□ -0.56
COL7A1-204ENST00000462475 GSTZ1O43708 216 aaPredicted RBP11.55□□□□□ -0.56
COL7A1-204ENST00000462475 SULT1A3P0DMM9 295 aa11.55□□□□□ -0.56
COL7A1-204ENST00000462475 SULT1A4P0DMN0 295 aa11.55□□□□□ -0.56
COL7A1-204ENST00000462475 HLA-DRB4P13762 266 aa11.55□□□□□ -0.56
COL7A1-204ENST00000462475 NUTF2P61970 127 aaKnown RBP11.55□□□□□ -0.56
COL7A1-204ENST00000462475 GDF5OSQ5U4N7 250 aa11.55□□□□□ -0.56
COL7A1-204ENST00000462475 PTTG2Q9NZH5 202 aa11.55□□□□□ -0.56
COL7A1-204ENST00000462475 HLA-DRB4X5D2U9 266 aa11.55□□□□□ -0.56
COL7A1-204ENST00000462475 RYR1P21817 5038 aa11.55□□□□□ -0.56
COL7A1-204ENST00000462475 H3BMQ9 156 aa11.54□□□□□ -0.56
COL7A1-204ENST00000462475 IFNA10P01566 189 aa11.54□□□□□ -0.56
COL7A1-204ENST00000462475 AKAIN1P0CW23 69 aa11.54□□□□□ -0.56
COL7A1-204ENST00000462475 ZNF705AQ6ZN79 300 aaPredicted RBP11.54□□□□□ -0.56
COL7A1-204ENST00000462475 LINC00336Q6ZUF6 198 aa11.54□□□□□ -0.56
COL7A1-204ENST00000462475 OR51S1Q8NGJ8 323 aa11.54□□□□□ -0.56
COL7A1-204ENST00000462475 IL22RA2Q969J5 263 aa11.54□□□□□ -0.56
COL7A1-204ENST00000462475 RNF125Q96EQ8 232 aa11.54□□□□□ -0.56
COL7A1-204ENST00000462475 PBDC1Q9BVG4 233 aa11.54□□□□□ -0.56
COL7A1-204ENST00000462475 A0A1B0GVY2 172 aa11.53□□□□□ -0.56
COL7A1-204ENST00000462475 IGKV3-20P01619 116 aa11.53□□□□□ -0.56
COL7A1-204ENST00000462475 NKX2-1P43699 371 aaPredicted RBP11.53□□□□□ -0.56
COL7A1-204ENST00000462475 FXYD7P58549 80 aa11.53□□□□□ -0.56
COL7A1-204ENST00000462475 SPCS2Q15005 226 aa11.53□□□□□ -0.56
COL7A1-204ENST00000462475 GSG1LQ6UXU4 331 aa11.53□□□□□ -0.56
COL7A1-204ENST00000462475 NOXA1Q86UR1 476 aa11.53□□□□□ -0.56
COL7A1-204ENST00000462475 POM121L12Q8N7R1 296 aa11.53□□□□□ -0.56
COL7A1-204ENST00000462475 DTD1Q8TEA8 209 aa11.53□□□□□ -0.56
COL7A1-204ENST00000462475 PRRT1Q99946 306 aa11.53□□□□□ -0.56
COL7A1-204ENST00000462475 NDUFAF3Q9BU61 184 aa11.53□□□□□ -0.56
COL7A1-204ENST00000462475 WDR12Q9GZL7 423 aaKnown RBP11.53□□□□□ -0.56
COL7A1-204ENST00000462475 PKD1P98161 4303 aa11.53□□□□□ -0.56
COL7A1-204ENST00000462475 IGKV1D-37A0A075B6S9 117 aa11.52□□□□□ -0.57
COL7A1-204ENST00000462475 ZNF705FA8MVS1 300 aaPredicted RBP11.52□□□□□ -0.57
COL7A1-204ENST00000462475 ZNF705DP0CH99 300 aaPredicted RBP11.52□□□□□ -0.57
COL7A1-204ENST00000462475 ZNF705BP0CI00 300 aaPredicted RBP11.52□□□□□ -0.57
COL7A1-204ENST00000462475 P0DMU3 169 aa11.52□□□□□ -0.57
COL7A1-204ENST00000462475 FAM231AP0DMU4 169 aa11.52□□□□□ -0.57
COL7A1-204ENST00000462475 FAM231CP0DMU5 169 aa11.52□□□□□ -0.57
COL7A1-204ENST00000462475 EMP1P54849 157 aa11.52□□□□□ -0.57
COL7A1-204ENST00000462475 KLF9Q13886 244 aaPredicted RBP11.52□□□□□ -0.57
COL7A1-204ENST00000462475 IL18Q14116 193 aa11.52□□□□□ -0.57
COL7A1-204ENST00000462475 LGI3Q8N145 548 aa11.52□□□□□ -0.57
COL7A1-204ENST00000462475 RBKSQ9H477 322 aa11.52□□□□□ -0.57
COL7A1-204ENST00000462475 HSPB7Q9UBY9 170 aa11.52□□□□□ -0.57
COL7A1-204ENST00000462475 U3KQ87 197 aa11.52□□□□□ -0.57
COL7A1-204ENST00000462475 A0A0B4J2A0 478 aa11.51□□□□□ -0.57
COL7A1-204ENST00000462475 CTDSPLO15194 276 aa11.51□□□□□ -0.57
COL7A1-204ENST00000462475 NUP62P37198 522 aaPredicted RBP11.51□□□□□ -0.57
COL7A1-204ENST00000462475 CCR6P51684 374 aa11.51□□□□□ -0.57
COL7A1-204ENST00000462475 ZNF90Q03938 601 aa11.51□□□□□ -0.57
COL7A1-204ENST00000462475 SMCO1Q147U7 214 aa11.51□□□□□ -0.57
COL7A1-204ENST00000462475 OR8G2PQ6IF36 304 aa11.51□□□□□ -0.57
COL7A1-204ENST00000462475 LYZL2Q7Z4W2 148 aa11.51□□□□□ -0.57
COL7A1-204ENST00000462475 LINC00052Q96N35 136 aa11.51□□□□□ -0.57
COL7A1-204ENST00000462475 NEU1Q99519 415 aa11.51□□□□□ -0.57
COL7A1-204ENST00000462475 SAV1Q9H4B6 383 aaPredicted RBP11.51□□□□□ -0.57
COL7A1-204ENST00000462475 CACFD1Q9UGQ2 172 aa11.51□□□□□ -0.57
COL7A1-204ENST00000462475 SHPKQ9UHJ6 478 aa11.51□□□□□ -0.57
COL7A1-204ENST00000462475 IGHV3OR16-12A0A075B7B8 117 aa11.5□□□□□ -0.57
COL7A1-204ENST00000462475 ANKRD20A5PA0PJZ0 165 aa11.5□□□□□ -0.57
COL7A1-204ENST00000462475 ZFP92A6NM28 416 aa11.5□□□□□ -0.57
COL7A1-204ENST00000462475 M0R2N4 97 aa11.5□□□□□ -0.57
COL7A1-204ENST00000462475 SOCS3O14543 225 aa11.5□□□□□ -0.57
COL7A1-204ENST00000462475 RTL8CO15255 209 aa11.5□□□□□ -0.57
COL7A1-204ENST00000462475 SUPT4H1P63272 117 aaKnown RBP11.5□□□□□ -0.57
COL7A1-204ENST00000462475 GAMTQ14353 236 aa11.5□□□□□ -0.57
COL7A1-204ENST00000462475 FOXI2Q6ZQN5 318 aa11.5□□□□□ -0.57
COL7A1-204ENST00000462475 ZNF709Q8N972 641 aa11.5□□□□□ -0.57
COL7A1-204ENST00000462475 DIRAS2Q96HU8 199 aa11.5□□□□□ -0.57
COL7A1-204ENST00000462475 KCNIP3Q9Y2W7 256 aa11.5□□□□□ -0.57
COL7A1-204ENST00000462475 SPART-AS1P0CW21 52 aa11.49□□□□□ -0.57
COL7A1-204ENST00000462475 PSMB3P49720 205 aa11.49□□□□□ -0.57
COL7A1-204ENST00000462475 LYZP61626 148 aa11.49□□□□□ -0.57
COL7A1-204ENST00000462475 SLC35E1Q96K37 410 aa11.49□□□□□ -0.57
COL7A1-204ENST00000462475 SLC35B3Q9H1N7 401 aa11.49□□□□□ -0.57
COL7A1-204ENST00000462475 TMEM189A5PLL7 270 aa11.48□□□□□ -0.57
COL7A1-204ENST00000462475 PRSS29PA6NIE9 313 aa11.48□□□□□ -0.57
COL7A1-204ENST00000462475 AKR1C4P17516 323 aa11.48□□□□□ -0.57
COL7A1-204ENST00000462475 GPX4P36969 197 aaPredicted RBP11.48□□□□□ -0.57
COL7A1-204ENST00000462475 ID1P41134 155 aa11.48□□□□□ -0.57
COL7A1-204ENST00000462475 OR2F1Q13607 317 aa11.48□□□□□ -0.57
COL7A1-204ENST00000462475 ZNF79Q15937 498 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms