RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 RLN2P04090 185 aa17.18■□□□□ 0.34
CCDC28B-203ENST00000461819 C11orf1Q9H5F2 150 aa17.18■□□□□ 0.34
CCDC28B-203ENST00000461819 IGKV1OR2-108A0A075B7D4 117 aa17.17■□□□□ 0.34
CCDC28B-203ENST00000461819 A0A1W2PS18 150 aa17.17■□□□□ 0.34
CCDC28B-203ENST00000461819 FAM24AA6NFZ4 105 aa17.17■□□□□ 0.34
CCDC28B-203ENST00000461819 TSPAN4O14817 238 aa17.17■□□□□ 0.34
CCDC28B-203ENST00000461819 DEDDO75618 318 aa17.17■□□□□ 0.34
CCDC28B-203ENST00000461819 APOHP02749 345 aaPredicted RBP17.17■□□□□ 0.34
CCDC28B-203ENST00000461819 CRYBB3P26998 211 aa17.17■□□□□ 0.34
CCDC28B-203ENST00000461819 OR2F1Q13607 317 aa17.17■□□□□ 0.34
CCDC28B-203ENST00000461819 USF2Q15853 346 aaPredicted RBP17.17■□□□□ 0.34
CCDC28B-203ENST00000461819 RNF125Q96EQ8 232 aa17.17■□□□□ 0.34
CCDC28B-203ENST00000461819 SPAG8Q99932 426 aaPredicted RBP17.17■□□□□ 0.34
CCDC28B-203ENST00000461819 NEURL2Q9BR09 285 aa17.17■□□□□ 0.34
CCDC28B-203ENST00000461819 PBDC1Q9BVG4 233 aa17.17■□□□□ 0.34
CCDC28B-203ENST00000461819 LYRM2Q9NU23 88 aaPredicted RBP17.17■□□□□ 0.34
CCDC28B-203ENST00000461819 HNRNPCP07910 306 aaKnown RBP eCLIP17.16■□□□□ 0.34
CCDC28B-203ENST00000461819 TMEM144Q7Z5S9 345 aa17.16■□□□□ 0.34
CCDC28B-203ENST00000461819 STX12Q86Y82 276 aa17.16■□□□□ 0.34
CCDC28B-203ENST00000461819 Q8N1Y9 231 aa17.16■□□□□ 0.34
CCDC28B-203ENST00000461819 GRAMD2BQ96HH9 432 aa17.16■□□□□ 0.34
CCDC28B-203ENST00000461819 VSIRQ9H7M9 311 aa17.16■□□□□ 0.34
CCDC28B-203ENST00000461819 RABAC1Q9UI14 185 aa17.16■□□□□ 0.34
CCDC28B-203ENST00000461819 FNDC10F2Z333 226 aa17.15■□□□□ 0.34
CCDC28B-203ENST00000461819 CST7O76096 145 aa17.15■□□□□ 0.34
CCDC28B-203ENST00000461819 CD7P09564 240 aa17.15■□□□□ 0.34
CCDC28B-203ENST00000461819 LYZP61626 148 aa17.15■□□□□ 0.34
CCDC28B-203ENST00000461819 SLC38A11Q08AI6 406 aa17.15■□□□□ 0.34
CCDC28B-203ENST00000461819 ARL16Q0P5N6 197 aa17.15■□□□□ 0.34
CCDC28B-203ENST00000461819 TCF24Q7RTU0 167 aa17.15■□□□□ 0.34
CCDC28B-203ENST00000461819 MED28Q9H204 178 aa17.15■□□□□ 0.34
CCDC28B-203ENST00000461819 IGKV3-7A0A075B6H7 116 aa17.14■□□□□ 0.33
CCDC28B-203ENST00000461819 IGSF23A1L1A6 192 aa17.14■□□□□ 0.33
CCDC28B-203ENST00000461819 CD5P06127 495 aa17.14■□□□□ 0.33
CCDC28B-203ENST00000461819 RPL11P62913 178 aaKnown RBP17.14■□□□□ 0.33
CCDC28B-203ENST00000461819 TMEM217Q8N7C4 229 aa17.14■□□□□ 0.33
CCDC28B-203ENST00000461819 PPP1R1CQ8WVI7 109 aa17.14■□□□□ 0.33
CCDC28B-203ENST00000461819 GGACTQ9BVM4 153 aa17.14■□□□□ 0.33
CCDC28B-203ENST00000461819 NPVFQ9HCQ7 196 aa17.14■□□□□ 0.33
CCDC28B-203ENST00000461819 OR4C46A6NHA9 309 aa17.13■□□□□ 0.33
CCDC28B-203ENST00000461819 E5RGE8 158 aa17.13■□□□□ 0.33
CCDC28B-203ENST00000461819 PET100P0DJ07 73 aa17.13■□□□□ 0.33
CCDC28B-203ENST00000461819 IGHV4-30-4P0DP06 118 aa17.13■□□□□ 0.33
CCDC28B-203ENST00000461819 P2RY1P47900 373 aa17.13■□□□□ 0.33
CCDC28B-203ENST00000461819 SULT1A1P50225 295 aa17.13■□□□□ 0.33
CCDC28B-203ENST00000461819 OXA1LQ15070 435 aa17.13■□□□□ 0.33
CCDC28B-203ENST00000461819 LILRB2Q8N423 598 aa17.13■□□□□ 0.33
CCDC28B-203ENST00000461819 TMEM252Q8N6L7 170 aa17.13■□□□□ 0.33
CCDC28B-203ENST00000461819 BPIFCQ8NFQ6 507 aa17.13■□□□□ 0.33
CCDC28B-203ENST00000461819 B9D2Q9BPU9 175 aa17.13■□□□□ 0.33
CCDC28B-203ENST00000461819 OR5AC2Q9NZP5 309 aa17.13■□□□□ 0.33
CCDC28B-203ENST00000461819 DFFBO76075 338 aa17.12■□□□□ 0.33
CCDC28B-203ENST00000461819 CFDP00746 253 aaPredicted RBP17.12■□□□□ 0.33
CCDC28B-203ENST00000461819 EIF2B2P49770 351 aaKnown RBP17.12■□□□□ 0.33
CCDC28B-203ENST00000461819 HBG1P69891 147 aa17.12■□□□□ 0.33
CCDC28B-203ENST00000461819 HBG2P69892 147 aa17.12■□□□□ 0.33
CCDC28B-203ENST00000461819 PFDN2Q9UHV9 154 aa17.12■□□□□ 0.33
CCDC28B-203ENST00000461819 NUP62P37198 522 aaPredicted RBP17.11■□□□□ 0.33
CCDC28B-203ENST00000461819 TFPI2P48307 235 aa17.11■□□□□ 0.33
CCDC28B-203ENST00000461819 PAFAH1B2P68402 229 aa17.11■□□□□ 0.33
CCDC28B-203ENST00000461819 FAM90A2PQ658T7 463 aa17.11■□□□□ 0.33
CCDC28B-203ENST00000461819 TEPPQ6URK8 271 aa17.11■□□□□ 0.33
CCDC28B-203ENST00000461819 CYP2G1PQ6ZSU1 146 aa17.11■□□□□ 0.33
CCDC28B-203ENST00000461819 GBGT1Q8N5D6 347 aa17.11■□□□□ 0.33
CCDC28B-203ENST00000461819 TUBA4BQ9H853 241 aa17.11■□□□□ 0.33
CCDC28B-203ENST00000461819 U3KQE9 123 aa17.11■□□□□ 0.33
CCDC28B-203ENST00000461819 OR11H12B2RN74 326 aa17.1■□□□□ 0.33
CCDC28B-203ENST00000461819 H0YIZ8 118 aa17.1■□□□□ 0.33
CCDC28B-203ENST00000461819 MPC2O95563 127 aa17.1■□□□□ 0.33
CCDC28B-203ENST00000461819 FRMD6-AS1P0C7T7 363 aa17.1■□□□□ 0.33
CCDC28B-203ENST00000461819 CXCL3P19876 107 aa17.1■□□□□ 0.33
CCDC28B-203ENST00000461819 GATA2P23769 480 aaPredicted RBP17.1■□□□□ 0.33
CCDC28B-203ENST00000461819 FCN2Q15485 313 aa17.1■□□□□ 0.33
CCDC28B-203ENST00000461819 PPP1R14BQ96C90 147 aa17.1■□□□□ 0.33
CCDC28B-203ENST00000461819 SLC25A31Q9H0C2 315 aa17.1■□□□□ 0.33
CCDC28B-203ENST00000461819 WFDC10AQ9H1F0 79 aa17.1■□□□□ 0.33
CCDC28B-203ENST00000461819 DNASE2O00115 360 aaPredicted RBP17.09■□□□□ 0.33
CCDC28B-203ENST00000461819 S100A11P31949 105 aa17.09■□□□□ 0.33
CCDC28B-203ENST00000461819 SELENOTP62341 195 aa17.09■□□□□ 0.33
CCDC28B-203ENST00000461819 DEFB125Q8N687 156 aa17.09■□□□□ 0.33
CCDC28B-203ENST00000461819 UQCC1Q9NVA1 299 aa17.09■□□□□ 0.33
CCDC28B-203ENST00000461819 HELTA6NFD8 242 aa17.08■□□□□ 0.32
CCDC28B-203ENST00000461819 EWSR1Q01844 656 aaKnown RBP eCLIP17.08■□□□□ 0.32
CCDC28B-203ENST00000461819 C16orf54Q6UWD8 224 aa17.08■□□□□ 0.32
CCDC28B-203ENST00000461819 TMEM182Q6ZP80 229 aaPredicted RBP17.08■□□□□ 0.32
CCDC28B-203ENST00000461819 WFDC3Q8IUB2 231 aa17.08■□□□□ 0.32
CCDC28B-203ENST00000461819 OR11H7Q8NGC8 314 aa17.08■□□□□ 0.32
CCDC28B-203ENST00000461819 TMEM147Q9BVK8 224 aa17.08■□□□□ 0.32
CCDC28B-203ENST00000461819 MS4A6AQ9H2W1 248 aa17.08■□□□□ 0.32
CCDC28B-203ENST00000461819 UBQLN2Q9UHD9 624 aa17.08■□□□□ 0.32
CCDC28B-203ENST00000461819 TGP01266 2768 aa17.08■□□□□ 0.32
CCDC28B-203ENST00000461819 UBE2L5PA0A1B0GUS4 154 aa17.07■□□□□ 0.32
CCDC28B-203ENST00000461819 BUB3O43684 328 aa17.07■□□□□ 0.32
CCDC28B-203ENST00000461819 ORM2P19652 201 aa17.07■□□□□ 0.32
CCDC28B-203ENST00000461819 ZNF546Q86UE3 836 aa17.07■□□□□ 0.32
CCDC28B-203ENST00000461819 STXBP6Q8NFX7 210 aa17.07■□□□□ 0.32
CCDC28B-203ENST00000461819 OR1B1Q8NGR6 318 aa17.07■□□□□ 0.32
CCDC28B-203ENST00000461819 GLMPQ8WWB7 406 aa17.07■□□□□ 0.32
CCDC28B-203ENST00000461819 SRD5A3Q9H8P0 318 aa17.07■□□□□ 0.32
CCDC28B-203ENST00000461819 A8MZ25 164 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms