RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 RELQ04864 619 aaPredicted RBP6.72□□□□□ -1.33
SYNE1-214ENST00000454018 NPIPB3Q92617 1050 aa6.72□□□□□ -1.33
SYNE1-214ENST00000454018 ACY3Q96HD9 319 aa6.72□□□□□ -1.33
SYNE1-214ENST00000454018 DUX3Q96PT4 197 aa6.72□□□□□ -1.33
SYNE1-214ENST00000454018 RNF126Q9BV68 326 aa6.72□□□□□ -1.33
SYNE1-214ENST00000454018 SORL1Q92673 2214 aa6.72□□□□□ -1.33
SYNE1-214ENST00000454018 UBE2CO00762 179 aa6.71□□□□□ -1.33
SYNE1-214ENST00000454018 CCNKO75909 580 aa6.71□□□□□ -1.33
SYNE1-214ENST00000454018 CST7O76096 145 aa6.71□□□□□ -1.33
SYNE1-214ENST00000454018 CTSGP08311 255 aa6.71□□□□□ -1.33
SYNE1-214ENST00000454018 IGLC1P0CG04 106 aa6.71□□□□□ -1.33
SYNE1-214ENST00000454018 OR10J1P30954 320 aa6.71□□□□□ -1.33
SYNE1-214ENST00000454018 S100A11P31949 105 aa6.71□□□□□ -1.33
SYNE1-214ENST00000454018 SLURP1P55000 103 aa6.71□□□□□ -1.33
SYNE1-214ENST00000454018 EWSR1Q01844 656 aaKnown RBP eCLIP6.71□□□□□ -1.33
SYNE1-214ENST00000454018 SLC38A11Q08AI6 406 aa6.71□□□□□ -1.33
SYNE1-214ENST00000454018 GAMTQ14353 236 aa6.71□□□□□ -1.33
SYNE1-214ENST00000454018 HAPLN4Q86UW8 402 aa6.71□□□□□ -1.33
SYNE1-214ENST00000454018 C1QL4Q86Z23 238 aa6.71□□□□□ -1.33
SYNE1-214ENST00000454018 OR1S2Q8NGQ3 325 aa6.71□□□□□ -1.33
SYNE1-214ENST00000454018 ST8SIA2Q92186 375 aa6.71□□□□□ -1.33
SYNE1-214ENST00000454018 CHRDL1Q9BU40 450 aa6.71□□□□□ -1.33
SYNE1-214ENST00000454018 MRPL36Q9P0J6 103 aaKnown RBP6.71□□□□□ -1.33
SYNE1-214ENST00000454018 PKD1L1Q8TDX9 2849 aa6.71□□□□□ -1.33
SYNE1-214ENST00000454018 FXYD6-FXYD2A0A087WZ82 144 aa6.71□□□□□ -1.34
SYNE1-214ENST00000454018 SMCO3A2RU48 225 aa6.71□□□□□ -1.34
SYNE1-214ENST00000454018 A8MWP6 167 aa6.71□□□□□ -1.34
SYNE1-214ENST00000454018 G3V3Q6 166 aa6.71□□□□□ -1.34
SYNE1-214ENST00000454018 NDUFA4O00483 81 aa6.71□□□□□ -1.34
SYNE1-214ENST00000454018 FABP1P07148 127 aa6.71□□□□□ -1.34
SYNE1-214ENST00000454018 KLF5Q13887 457 aaPredicted RBP6.71□□□□□ -1.34
SYNE1-214ENST00000454018 MLANAQ16655 118 aa6.71□□□□□ -1.34
SYNE1-214ENST00000454018 FAM106AQ4KMX7 169 aa6.71□□□□□ -1.34
SYNE1-214ENST00000454018 TMEM144Q7Z5S9 345 aa6.71□□□□□ -1.34
SYNE1-214ENST00000454018 AKAP14Q86UN6 197 aa6.71□□□□□ -1.34
SYNE1-214ENST00000454018 GPHB5Q86YW7 130 aa6.71□□□□□ -1.34
SYNE1-214ENST00000454018 TMEM217Q8N7C4 229 aa6.71□□□□□ -1.34
SYNE1-214ENST00000454018 THAP8Q8NA92 274 aa6.71□□□□□ -1.34
SYNE1-214ENST00000454018 TMEM190Q8WZ59 177 aa6.71□□□□□ -1.34
SYNE1-214ENST00000454018 AQP10Q96PS8 301 aa6.71□□□□□ -1.34
SYNE1-214ENST00000454018 TMEM147Q9BVK8 224 aa6.71□□□□□ -1.34
SYNE1-214ENST00000454018 CTDSP1Q9GZU7 261 aa6.71□□□□□ -1.34
SYNE1-214ENST00000454018 ZC4H2Q9NQZ6 224 aa6.71□□□□□ -1.34
SYNE1-214ENST00000454018 HSPB11Q9Y547 144 aa6.71□□□□□ -1.34
SYNE1-214ENST00000454018 MGAM2Q2M2H8 2515 aa6.7□□□□□ -1.34
SYNE1-214ENST00000454018 TRRAPQ9Y4A5 3859 aa6.7□□□□□ -1.34
SYNE1-214ENST00000454018 GAGE10A6NGK3 116 aa6.7□□□□□ -1.34
SYNE1-214ENST00000454018 ZFP92A6NM28 416 aa6.7□□□□□ -1.34
SYNE1-214ENST00000454018 LGALS9O00182 355 aa6.7□□□□□ -1.34
SYNE1-214ENST00000454018 OVOL1O14753 267 aa6.7□□□□□ -1.34
SYNE1-214ENST00000454018 OR2C1O95371 312 aa6.7□□□□□ -1.34
SYNE1-214ENST00000454018 IGKV1-17P01599 117 aa6.7□□□□□ -1.34
SYNE1-214ENST00000454018 RPL12P30050 165 aaKnown RBP6.7□□□□□ -1.34
SYNE1-214ENST00000454018 NUP62P37198 522 aaPredicted RBP6.7□□□□□ -1.34
SYNE1-214ENST00000454018 SYNJ2BPP57105 145 aa6.7□□□□□ -1.34
SYNE1-214ENST00000454018 YPEL3P61236 119 aaPredicted RBP6.7□□□□□ -1.34
SYNE1-214ENST00000454018 ARL16Q0P5N6 197 aa6.7□□□□□ -1.34
SYNE1-214ENST00000454018 ATP6V1FQ16864 119 aa6.7□□□□□ -1.34
SYNE1-214ENST00000454018 VWC2Q2TAL6 325 aa6.7□□□□□ -1.34
SYNE1-214ENST00000454018 ZNF600Q6ZNG1 722 aa6.7□□□□□ -1.34
SYNE1-214ENST00000454018 TCTE3Q8IZS6 198 aa6.7□□□□□ -1.34
SYNE1-214ENST00000454018 INO80EQ8NBZ0 244 aaPredicted RBP6.7□□□□□ -1.34
SYNE1-214ENST00000454018 OR5C1Q8NGR4 320 aa6.7□□□□□ -1.34
SYNE1-214ENST00000454018 TRGV9Q99603 122 aa6.7□□□□□ -1.34
SYNE1-214ENST00000454018 MCRIP2Q9BUT9 160 aaKnown RBP6.7□□□□□ -1.34
SYNE1-214ENST00000454018 NPVFQ9HCQ7 196 aa6.7□□□□□ -1.34
SYNE1-214ENST00000454018 UQCC1Q9NVA1 299 aa6.7□□□□□ -1.34
SYNE1-214ENST00000454018 PEMTQ9UBM1 199 aa6.7□□□□□ -1.34
SYNE1-214ENST00000454018 IGKV1OR2-108A0A075B7D4 117 aa6.69□□□□□ -1.34
SYNE1-214ENST00000454018 UBE2L5PA0A1B0GUS4 154 aa6.69□□□□□ -1.34
SYNE1-214ENST00000454018 A0A1B0GVG6 124 aa6.69□□□□□ -1.34
SYNE1-214ENST00000454018 C9orf118A6NHY6 69 aa6.69□□□□□ -1.34
SYNE1-214ENST00000454018 F5H697 171 aa6.69□□□□□ -1.34
SYNE1-214ENST00000454018 DFFBO76075 338 aa6.69□□□□□ -1.34
SYNE1-214ENST00000454018 TOMM40O96008 361 aa6.69□□□□□ -1.34
SYNE1-214ENST00000454018 NHLH2Q02577 135 aa6.69□□□□□ -1.34
SYNE1-214ENST00000454018 TIGITQ495A1 244 aa6.69□□□□□ -1.34
SYNE1-214ENST00000454018 CD300EQ496F6 205 aaPredicted RBP6.69□□□□□ -1.34
SYNE1-214ENST00000454018 Q5BKY6 102 aa6.69□□□□□ -1.34
SYNE1-214ENST00000454018 ZNF546Q86UE3 836 aa6.69□□□□□ -1.34
SYNE1-214ENST00000454018 OR9G4Q8NGQ1 327 aa6.69□□□□□ -1.34
SYNE1-214ENST00000454018 DLX4Q92988 240 aaPredicted RBP6.69□□□□□ -1.34
SYNE1-214ENST00000454018 ST6GAL2Q96JF0 529 aa6.69□□□□□ -1.34
SYNE1-214ENST00000454018 GINS3Q9BRX5 216 aa6.69□□□□□ -1.34
SYNE1-214ENST00000454018 DAZ1Q9NQZ3 744 aaKnown RBP6.69□□□□□ -1.34
SYNE1-214ENST00000454018 TNFSF18Q9UNG2 199 aa6.69□□□□□ -1.34
SYNE1-214ENST00000454018 IGKV1D-37A0A075B6S9 117 aa6.68□□□□□ -1.34
SYNE1-214ENST00000454018 IGHV3-35A0A0C4DH35 117 aa6.68□□□□□ -1.34
SYNE1-214ENST00000454018 RNF222A6NCQ9 220 aa6.68□□□□□ -1.34
SYNE1-214ENST00000454018 MPDU1O75352 247 aa6.68□□□□□ -1.34
SYNE1-214ENST00000454018 ELLP55199 621 aaPredicted RBP6.68□□□□□ -1.34
SYNE1-214ENST00000454018 ZNF345Q14585 488 aa6.68□□□□□ -1.34
SYNE1-214ENST00000454018 CLINT1Q14677 625 aa6.68□□□□□ -1.34
SYNE1-214ENST00000454018 WFDC9Q8NEX5 89 aa6.68□□□□□ -1.34
SYNE1-214ENST00000454018 ATP5SQ99766 215 aa6.68□□□□□ -1.34
SYNE1-214ENST00000454018 ELOVL1Q9BW60 279 aa6.68□□□□□ -1.34
SYNE1-214ENST00000454018 GPR61Q9BZJ8 451 aa6.68□□□□□ -1.34
SYNE1-214ENST00000454018 UFC1Q9Y3C8 167 aa6.68□□□□□ -1.34
SYNE1-214ENST00000454018 LSM4Q9Y4Z0 139 aaKnown RBP6.68□□□□□ -1.34
SYNE1-214ENST00000454018 PUS1Q9Y606 427 aaKnown RBP eCLIP6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms