RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 ZNF846Q147U1 533 aa11.26□□□□□ -0.61
LIMS3-201ENST00000437679 IAH1Q2TAA2 248 aaPredicted RBP11.26□□□□□ -0.61
LIMS3-201ENST00000437679 STXBP6Q8NFX7 210 aa11.26□□□□□ -0.61
LIMS3-201ENST00000437679 WDR12Q9GZL7 423 aaKnown RBP11.26□□□□□ -0.61
LIMS3-201ENST00000437679 NUDT15Q9NV35 164 aa11.26□□□□□ -0.61
LIMS3-201ENST00000437679 PSENENQ9NZ42 101 aa11.26□□□□□ -0.61
LIMS3-201ENST00000437679 PFDN2Q9UHV9 154 aa11.26□□□□□ -0.61
LIMS3-201ENST00000437679 KIR2DL5BA0A0G2JN68 375 aa11.25□□□□□ -0.61
LIMS3-201ENST00000437679 KIR2DL5BA0A0G2JPC4 375 aa11.25□□□□□ -0.61
LIMS3-201ENST00000437679 SSSCA1O60232 199 aa11.25□□□□□ -0.61
LIMS3-201ENST00000437679 SCGB1D2O95969 90 aa11.25□□□□□ -0.61
LIMS3-201ENST00000437679 H2AFB2P0C5Z0 115 aa11.25□□□□□ -0.61
LIMS3-201ENST00000437679 LYL1P12980 280 aa11.25□□□□□ -0.61
LIMS3-201ENST00000437679 NUP62P37198 522 aaPredicted RBP11.25□□□□□ -0.61
LIMS3-201ENST00000437679 AP2S1P53680 142 aaPredicted RBP11.25□□□□□ -0.61
LIMS3-201ENST00000437679 ZNF90Q03938 601 aa11.25□□□□□ -0.61
LIMS3-201ENST00000437679 C16orf54Q6UWD8 224 aa11.25□□□□□ -0.61
LIMS3-201ENST00000437679 KIR2DL5AQ8N109 375 aa11.25□□□□□ -0.61
LIMS3-201ENST00000437679 STPG3Q8N7X2 389 aa11.25□□□□□ -0.61
LIMS3-201ENST00000437679 ZBTB8BQ8NAP8 495 aaPredicted RBP11.25□□□□□ -0.61
LIMS3-201ENST00000437679 KIR2DL5BQ8NHK3 375 aa11.25□□□□□ -0.61
LIMS3-201ENST00000437679 RNF125Q96EQ8 232 aa11.25□□□□□ -0.61
LIMS3-201ENST00000437679 TRGV9Q99603 122 aa11.25□□□□□ -0.61
LIMS3-201ENST00000437679 PBDC1Q9BVG4 233 aa11.25□□□□□ -0.61
LIMS3-201ENST00000437679 GSKIPQ9P0R6 139 aa11.25□□□□□ -0.61
LIMS3-201ENST00000437679 IGKV1D-37A0A075B6S9 117 aa11.24□□□□□ -0.61
LIMS3-201ENST00000437679 SNRPGP15A8MWD9 76 aa11.24□□□□□ -0.61
LIMS3-201ENST00000437679 DEFB131AP59861 70 aa11.24□□□□□ -0.61
LIMS3-201ENST00000437679 ZNF124Q15973 351 aa11.24□□□□□ -0.61
LIMS3-201ENST00000437679 OR8G2PQ6IF36 304 aa11.24□□□□□ -0.61
LIMS3-201ENST00000437679 Q6ZWC4 215 aa11.24□□□□□ -0.61
LIMS3-201ENST00000437679 THAP8Q8NA92 274 aa11.24□□□□□ -0.61
LIMS3-201ENST00000437679 ZNF431Q8TF32 576 aaPredicted RBP11.24□□□□□ -0.61
LIMS3-201ENST00000437679 GLMPQ8WWB7 406 aa11.24□□□□□ -0.61
LIMS3-201ENST00000437679 SMIM8Q96KF7 97 aa11.24□□□□□ -0.61
LIMS3-201ENST00000437679 TBC1D24Q9ULP9 559 aa11.24□□□□□ -0.61
LIMS3-201ENST00000437679 DNAH7Q8WXX0 4024 aa11.24□□□□□ -0.61
LIMS3-201ENST00000437679 PRSS46E5RG02 174 aa11.23□□□□□ -0.61
LIMS3-201ENST00000437679 K7EQG2 157 aa11.23□□□□□ -0.61
LIMS3-201ENST00000437679 BUB3O43684 328 aa11.23□□□□□ -0.61
LIMS3-201ENST00000437679 UPK1BO75841 260 aa11.23□□□□□ -0.61
LIMS3-201ENST00000437679 LYZP61626 148 aa11.23□□□□□ -0.61
LIMS3-201ENST00000437679 AKR1C1Q04828 323 aa11.23□□□□□ -0.61
LIMS3-201ENST00000437679 ASAH1Q13510 395 aa11.23□□□□□ -0.61
LIMS3-201ENST00000437679 OR2F1Q13607 317 aa11.23□□□□□ -0.61
LIMS3-201ENST00000437679 RAB40CQ96S21 281 aa11.23□□□□□ -0.61
LIMS3-201ENST00000437679 SEC22CQ9BRL7 303 aa11.23□□□□□ -0.61
LIMS3-201ENST00000437679 OVOL2Q9BRP0 275 aa11.23□□□□□ -0.61
LIMS3-201ENST00000437679 BATF3Q9NR55 127 aa11.23□□□□□ -0.61
LIMS3-201ENST00000437679 FAM25EA8MYX2 175 aa11.22□□□□□ -0.61
LIMS3-201ENST00000437679 CCSO14618 274 aa11.22□□□□□ -0.61
LIMS3-201ENST00000437679 SPRY2O43597 315 aa11.22□□□□□ -0.61
LIMS3-201ENST00000437679 CFDP00746 253 aaPredicted RBP11.22□□□□□ -0.61
LIMS3-201ENST00000437679 DEFB135Q30KP9 77 aa11.22□□□□□ -0.61
LIMS3-201ENST00000437679 CASC10Q5T4H9 136 aa11.22□□□□□ -0.61
LIMS3-201ENST00000437679 LEMD1Q68G75 181 aa11.22□□□□□ -0.61
LIMS3-201ENST00000437679 ACOT7LQ6ZUV0 252 aa11.22□□□□□ -0.61
LIMS3-201ENST00000437679 C12orf45Q8N5I9 185 aaPredicted RBP11.22□□□□□ -0.61
LIMS3-201ENST00000437679 FAM24BQ8N5W8 94 aa11.22□□□□□ -0.61
LIMS3-201ENST00000437679 ENKURQ8TC29 256 aa11.22□□□□□ -0.61
LIMS3-201ENST00000437679 CSTL1Q9H114 145 aa11.22□□□□□ -0.61
LIMS3-201ENST00000437679 TP53TG1Q9Y2A0 90 aa11.22□□□□□ -0.61
LIMS3-201ENST00000437679 IGKV1OR2-108A0A075B7D4 117 aa11.21□□□□□ -0.61
LIMS3-201ENST00000437679 SMCO3A2RU48 225 aa11.21□□□□□ -0.61
LIMS3-201ENST00000437679 C5orf51A6NDU8 294 aa11.21□□□□□ -0.61
LIMS3-201ENST00000437679 TAS2R30P59541 319 aa11.21□□□□□ -0.61
LIMS3-201ENST00000437679 SIGLEC15Q6ZMC9 328 aa11.21□□□□□ -0.61
LIMS3-201ENST00000437679 DCANP1Q8TF63 244 aa11.21□□□□□ -0.61
LIMS3-201ENST00000437679 PPP1R14BQ96C90 147 aa11.21□□□□□ -0.61
LIMS3-201ENST00000437679 TSC22D2O75157 780 aa11.2□□□□□ -0.62
LIMS3-201ENST00000437679 MBPP02686 304 aaPredicted RBP11.2□□□□□ -0.62
LIMS3-201ENST00000437679 METTL15P1P0C7V9 234 aa11.2□□□□□ -0.62
LIMS3-201ENST00000437679 ZNF688P0C7X2 276 aa11.2□□□□□ -0.62
LIMS3-201ENST00000437679 PAX9P55771 341 aa11.2□□□□□ -0.62
LIMS3-201ENST00000437679 ZFAND6Q6FIF0 208 aa11.2□□□□□ -0.62
LIMS3-201ENST00000437679 TMEM144Q7Z5S9 345 aa11.2□□□□□ -0.62
LIMS3-201ENST00000437679 STHQ8IWL8 128 aa11.2□□□□□ -0.62
LIMS3-201ENST00000437679 BPIFCQ8NFQ6 507 aa11.2□□□□□ -0.62
LIMS3-201ENST00000437679 IL17DQ8TAD2 202 aa11.2□□□□□ -0.62
LIMS3-201ENST00000437679 NRN1Q9NPD7 142 aa11.2□□□□□ -0.62
LIMS3-201ENST00000437679 RCL1Q9Y2P8 373 aaKnown RBP11.2□□□□□ -0.62
LIMS3-201ENST00000437679 PMS2P5A8MQ11 134 aa11.19□□□□□ -0.62
LIMS3-201ENST00000437679 L7N2F9 121 aa11.19□□□□□ -0.62
LIMS3-201ENST00000437679 IL5P05113 134 aa11.19□□□□□ -0.62
LIMS3-201ENST00000437679 SNRPD3P62318 126 aaKnown RBP11.19□□□□□ -0.62
LIMS3-201ENST00000437679 VAMP2P63027 116 aa11.19□□□□□ -0.62
LIMS3-201ENST00000437679 C1orf194Q5T5A4 169 aa11.19□□□□□ -0.62
LIMS3-201ENST00000437679 TMEM14EPQ6UXP3 125 aa11.19□□□□□ -0.62
LIMS3-201ENST00000437679 OR10P1Q8NGE3 313 aa11.19□□□□□ -0.62
LIMS3-201ENST00000437679 RNF183Q96D59 192 aa11.19□□□□□ -0.62
LIMS3-201ENST00000437679 FBXL17Q9UF56 701 aa11.19□□□□□ -0.62
LIMS3-201ENST00000437679 S100A7P31151 101 aa11.18□□□□□ -0.62
LIMS3-201ENST00000437679 RRAS2P62070 204 aaPredicted RBP11.18□□□□□ -0.62
LIMS3-201ENST00000437679 DLK1P80370 383 aa11.18□□□□□ -0.62
LIMS3-201ENST00000437679 PSMG4Q5JS54 123 aa11.18□□□□□ -0.62
LIMS3-201ENST00000437679 GSG1LQ6UXU4 331 aa11.18□□□□□ -0.62
LIMS3-201ENST00000437679 C2orf50Q96LR7 162 aa11.18□□□□□ -0.62
LIMS3-201ENST00000437679 GPN1Q9HCN4 374 aaPredicted RBP11.18□□□□□ -0.62
LIMS3-201ENST00000437679 SEPSECSQ9HD40 501 aaKnown RBP11.18□□□□□ -0.62
LIMS3-201ENST00000437679 MGAT4CQ9UBM8 478 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms