RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 HOXD3P31249 432 aaPredicted RBP6.02□□□□□ -1.45
VPS53-204ENST00000437048 VKORC1Q9BQB6 163 aa6.02□□□□□ -1.45
VPS53-204ENST00000437048 TMSB15BA0A087X1C1 80 aa6.02□□□□□ -1.45
VPS53-204ENST00000437048 FXYD3Q14802 87 aa6.02□□□□□ -1.45
VPS53-204ENST00000437048 LAIR2Q6ISS4 152 aa6.02□□□□□ -1.45
VPS53-204ENST00000437048 LY6G5BQ8NDX9 201 aa6.02□□□□□ -1.45
VPS53-204ENST00000437048 DPH3P1Q9H4G8 78 aa6.02□□□□□ -1.45
VPS53-204ENST00000437048 IGHV3-43A0A0B4J1X8 118 aa6.02□□□□□ -1.45
VPS53-204ENST00000437048 CGAP01215 116 aa6.02□□□□□ -1.45
VPS53-204ENST00000437048 IGHV3-43DP0DP04 118 aa6.02□□□□□ -1.45
VPS53-204ENST00000437048 EGR4Q05215 589 aa6.02□□□□□ -1.45
VPS53-204ENST00000437048 UNQ5815/PRO19632Q6UWF5 114 aa6.02□□□□□ -1.45
VPS53-204ENST00000437048 TPRX1Q8N7U7 411 aa6.02□□□□□ -1.45
VPS53-204ENST00000437048 NPIPB3Q92617 1050 aa6.02□□□□□ -1.45
VPS53-204ENST00000437048 MRPL20Q9BYC9 149 aaKnown RBP6.02□□□□□ -1.45
VPS53-204ENST00000437048 ZFP36L2P47974 494 aaKnown RBP6.02□□□□□ -1.45
VPS53-204ENST00000437048 ZNF497Q6ZNH5 498 aa6.02□□□□□ -1.45
VPS53-204ENST00000437048 TEX43Q6ZNM6 134 aa6.02□□□□□ -1.45
VPS53-204ENST00000437048 F8WEM9 126 aa6.02□□□□□ -1.45
VPS53-204ENST00000437048 IGHV2-5P01817 119 aa6.02□□□□□ -1.45
VPS53-204ENST00000437048 IGKV3-11P04433 115 aa6.02□□□□□ -1.45
VPS53-204ENST00000437048 GUSBP1Q15486 140 aa6.02□□□□□ -1.45
VPS53-204ENST00000437048 PLXNA2O75051 1894 aa6.02□□□□□ -1.45
VPS53-204ENST00000437048 TMEM75Q8N9X5 138 aa6.02□□□□□ -1.45
VPS53-204ENST00000437048 JPT2Q9H910 190 aa6.02□□□□□ -1.45
VPS53-204ENST00000437048 FOXA3P55318 350 aaPredicted RBP6.01□□□□□ -1.45
VPS53-204ENST00000437048 SAA2-SAA4A0A096LPE2 208 aa6.01□□□□□ -1.45
VPS53-204ENST00000437048 ARHGAP21Q5T5U3 1957 aa6.01□□□□□ -1.45
VPS53-204ENST00000437048 PSG3Q16557 428 aa6.01□□□□□ -1.45
VPS53-204ENST00000437048 LPAL2Q16609 132 aa6.01□□□□□ -1.45
VPS53-204ENST00000437048 AURKAIP1Q9NWT8 199 aaPredicted RBP6.01□□□□□ -1.45
VPS53-204ENST00000437048 IGHV2-70DA0A0C4DH43 119 aa6.01□□□□□ -1.45
VPS53-204ENST00000437048 SCO2A0A1W2PP80 73 aa6.01□□□□□ -1.45
VPS53-204ENST00000437048 RTP5Q14D33 572 aa6.01□□□□□ -1.45
VPS53-204ENST00000437048 TMEM42Q69YG0 159 aa6.01□□□□□ -1.45
VPS53-204ENST00000437048 ADAMTSL5Q6ZMM2 481 aa6.01□□□□□ -1.45
VPS53-204ENST00000437048 ADAMTSL1Q8N6G6 1762 aa6.01□□□□□ -1.45
VPS53-204ENST00000437048 H0Y8X5 98 aa6.01□□□□□ -1.45
VPS53-204ENST00000437048 LENEPQ9Y5L5 61 aa6.01□□□□□ -1.45
VPS53-204ENST00000437048 TRAV13-2A0A0B4J235 113 aa6.01□□□□□ -1.45
VPS53-204ENST00000437048 RBMY1FQ15415 496 aaKnown RBP6.01□□□□□ -1.45
VPS53-204ENST00000437048 SPINK9Q5DT21 86 aa6.01□□□□□ -1.45
VPS53-204ENST00000437048 BDP1A6H8Y1 2624 aa6.01□□□□□ -1.45
VPS53-204ENST00000437048 TMEM131Q92545 1883 aa6.01□□□□□ -1.45
VPS53-204ENST00000437048 IGHV2-26A0A0B4J1V2 119 aa6.01□□□□□ -1.45
VPS53-204ENST00000437048 ZNF883P0CG24 379 aa6.01□□□□□ -1.45
VPS53-204ENST00000437048 SPSB2Q99619 263 aa6.01□□□□□ -1.45
VPS53-204ENST00000437048 HIGD1BQ9P298 99 aa6.01□□□□□ -1.45
VPS53-204ENST00000437048 ANKHD1Q8IWZ3 2542 aaKnown RBP6□□□□□ -1.45
VPS53-204ENST00000437048 MAJINQ3KP22 176 aa6□□□□□ -1.45
VPS53-204ENST00000437048 MPV17L2Q567V2 206 aa6□□□□□ -1.45
VPS53-204ENST00000437048 KLF14Q8TD94 323 aaPredicted RBP6□□□□□ -1.45
VPS53-204ENST00000437048 NCOA6Q14686 2063 aaPredicted RBP6□□□□□ -1.45
VPS53-204ENST00000437048 THSD7AQ9UPZ6 1657 aa6□□□□□ -1.45
VPS53-204ENST00000437048 GFRA3O60609 400 aa6□□□□□ -1.45
VPS53-204ENST00000437048 IGLC2P0DOY2 106 aa6□□□□□ -1.45
VPS53-204ENST00000437048 IGLC3P0DOY3 106 aa6□□□□□ -1.45
VPS53-204ENST00000437048 IGFBPL1Q8WX77 278 aa6□□□□□ -1.45
VPS53-204ENST00000437048 ZNF501Q96CX3 271 aaPredicted RBP6□□□□□ -1.45
VPS53-204ENST00000437048 A0A1W2PPE3 182 aa6□□□□□ -1.45
VPS53-204ENST00000437048 A0A1W2PPM0 123 aa6□□□□□ -1.45
VPS53-204ENST00000437048 PYGO2Q9BRQ0 406 aa6□□□□□ -1.45
VPS53-204ENST00000437048 KIR2DL5BA0A0G2JN68 375 aa6□□□□□ -1.45
VPS53-204ENST00000437048 KIR2DL5BA0A0G2JPC4 375 aa6□□□□□ -1.45
VPS53-204ENST00000437048 SNRPCP09234 159 aaKnown RBP6□□□□□ -1.45
VPS53-204ENST00000437048 KIR2DL5AQ8N109 375 aa6□□□□□ -1.45
VPS53-204ENST00000437048 NMSQ5H8A3 153 aa6□□□□□ -1.45
VPS53-204ENST00000437048 Q71RC1 249 aaPredicted RBP6□□□□□ -1.45
VPS53-204ENST00000437048 PLPPR2Q96GM1 343 aa6□□□□□ -1.45
VPS53-204ENST00000437048 NBR2O15453 112 aa6□□□□□ -1.45
VPS53-204ENST00000437048 AZU1P20160 251 aa6□□□□□ -1.45
VPS53-204ENST00000437048 ST6GALNAC3Q8NDV1 305 aa6□□□□□ -1.45
VPS53-204ENST00000437048 ECSCRQ19T08 205 aa6□□□□□ -1.45
VPS53-204ENST00000437048 GTSF1LQ9H1H1 148 aa6□□□□□ -1.45
VPS53-204ENST00000437048 PRO1854Q9UHT4 67 aa6□□□□□ -1.45
VPS53-204ENST00000437048 MINOS1Q5TGZ0 78 aa6□□□□□ -1.45
VPS53-204ENST00000437048 ABHD12Q8N2K0 398 aa6□□□□□ -1.45
VPS53-204ENST00000437048 C20orf78Q9BR46 151 aa6□□□□□ -1.45
VPS53-204ENST00000437048 PSG8Q9UQ74 426 aa6□□□□□ -1.45
VPS53-204ENST00000437048 MINOS1-NBL1R4GNA1 71 aa6□□□□□ -1.45
VPS53-204ENST00000437048 PRRC2AP48634 2157 aaKnown RBP6□□□□□ -1.45
VPS53-204ENST00000437048 LDLRAD4O15165 306 aa6□□□□□ -1.45
VPS53-204ENST00000437048 MSGN1A6NI15 193 aa5.99□□□□□ -1.45
VPS53-204ENST00000437048 CCL7P80098 99 aa5.99□□□□□ -1.45
VPS53-204ENST00000437048 JMJD8Q96S16 334 aa5.99□□□□□ -1.45
VPS53-204ENST00000437048 PDLIM4P50479 330 aa5.99□□□□□ -1.45
VPS53-204ENST00000437048 MORN2Q502X0 79 aa5.99□□□□□ -1.45
VPS53-204ENST00000437048 ATRAIDQ6UW56 229 aa5.99□□□□□ -1.45
VPS53-204ENST00000437048 CXorf67Q86X51 503 aaPredicted RBP5.99□□□□□ -1.45
VPS53-204ENST00000437048 ZPLD1Q8TCW7 415 aa5.99□□□□□ -1.45
VPS53-204ENST00000437048 PRSS47A8MTI9 375 aa5.99□□□□□ -1.45
VPS53-204ENST00000437048 WNT2P09544 360 aa5.99□□□□□ -1.45
VPS53-204ENST00000437048 C3orf79P0CE67 100 aa5.99□□□□□ -1.45
VPS53-204ENST00000437048 FOXL2P58012 376 aa5.99□□□□□ -1.45
VPS53-204ENST00000437048 BVES-AS1Q5T3Y7 98 aa5.99□□□□□ -1.45
VPS53-204ENST00000437048 CDK2AP2O75956 126 aa5.99□□□□□ -1.45
VPS53-204ENST00000437048 ZNF138P52744 262 aa5.99□□□□□ -1.45
VPS53-204ENST00000437048 C18orf15Q96N68 181 aa5.99□□□□□ -1.45
VPS53-204ENST00000437048 A0A1W2PRD5 423 aa5.99□□□□□ -1.45
VPS53-204ENST00000437048 A0A1W2PRF3 423 aa5.99□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms