RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 SIGLEC9Q9Y336 463 aa10.95□□□□□ -0.66
COL6A3-207ENST00000433762 C20orf202A1L168 122 aa10.94□□□□□ -0.66
COL6A3-207ENST00000433762 LTAP01374 205 aa10.94□□□□□ -0.66
COL6A3-207ENST00000433762 SLC25A5P05141 298 aaKnown RBP10.94□□□□□ -0.66
COL6A3-207ENST00000433762 MFAP2P55001 183 aa10.94□□□□□ -0.66
COL6A3-207ENST00000433762 PMCHL1Q16048 86 aa10.94□□□□□ -0.66
COL6A3-207ENST00000433762 NIT1Q86X76 327 aa10.94□□□□□ -0.66
COL6A3-207ENST00000433762 RNF24Q9Y225 148 aa10.94□□□□□ -0.66
COL6A3-207ENST00000433762 IGHV2-26A0A0B4J1V2 119 aa10.94□□□□□ -0.66
COL6A3-207ENST00000433762 A8MWL6 223 aa10.94□□□□□ -0.66
COL6A3-207ENST00000433762 E7EQL1 145 aa10.94□□□□□ -0.66
COL6A3-207ENST00000433762 SLAQ13239 276 aa10.94□□□□□ -0.66
COL6A3-207ENST00000433762 MMDQ15546 238 aa10.94□□□□□ -0.66
COL6A3-207ENST00000433762 ZNF705AQ6ZN79 300 aaPredicted RBP10.94□□□□□ -0.66
COL6A3-207ENST00000433762 SPACA3Q8IXA5 215 aa10.94□□□□□ -0.66
COL6A3-207ENST00000433762 RCHY1Q96PM5 261 aa10.94□□□□□ -0.66
COL6A3-207ENST00000433762 RPLP1P05386 114 aaKnown RBP10.93□□□□□ -0.66
COL6A3-207ENST00000433762 Q8NA96 180 aa10.93□□□□□ -0.66
COL6A3-207ENST00000433762 FAM168AQ92567 244 aa10.93□□□□□ -0.66
COL6A3-207ENST00000433762 LINC00479Q96M42 142 aa10.93□□□□□ -0.66
COL6A3-207ENST00000433762 CLEC7AQ9BXN2 247 aa10.93□□□□□ -0.66
COL6A3-207ENST00000433762 RPP21Q9H633 154 aaKnown RBP10.93□□□□□ -0.66
COL6A3-207ENST00000433762 OTORQ9NRC9 128 aa10.93□□□□□ -0.66
COL6A3-207ENST00000433762 TPSG1Q9NRR2 321 aa10.93□□□□□ -0.66
COL6A3-207ENST00000433762 MSRB2Q9Y3D2 182 aa10.93□□□□□ -0.66
COL6A3-207ENST00000433762 NAV3Q8IVL0 2385 aa10.93□□□□□ -0.66
COL6A3-207ENST00000433762 AKAP13Q12802 2813 aa10.92□□□□□ -0.66
COL6A3-207ENST00000433762 C19orf71A6NCJ1 209 aa10.92□□□□□ -0.66
COL6A3-207ENST00000433762 SPINK4O60575 86 aa10.92□□□□□ -0.66
COL6A3-207ENST00000433762 KRTDAPP60985 99 aa10.92□□□□□ -0.66
COL6A3-207ENST00000433762 SLC35B1P78383 322 aa10.92□□□□□ -0.66
COL6A3-207ENST00000433762 RBPJQ06330 500 aa10.92□□□□□ -0.66
COL6A3-207ENST00000433762 KIAA1644Q3SXP7 199 aa10.92□□□□□ -0.66
COL6A3-207ENST00000433762 PPP1R27Q86WC6 154 aa10.92□□□□□ -0.66
COL6A3-207ENST00000433762 KLHDC1Q8N7A1 406 aa10.92□□□□□ -0.66
COL6A3-207ENST00000433762 OR1B1Q8NGR6 318 aa10.92□□□□□ -0.66
COL6A3-207ENST00000433762 BORCS7Q96B45 105 aa10.92□□□□□ -0.66
COL6A3-207ENST00000433762 ALKBH7Q9BT30 221 aaPredicted RBP10.92□□□□□ -0.66
COL6A3-207ENST00000433762 IGHV1-3A0A0C4DH29 117 aa10.92□□□□□ -0.66
COL6A3-207ENST00000433762 PGPA6NDG6 321 aa10.92□□□□□ -0.66
COL6A3-207ENST00000433762 HIGD1CA8MV81 97 aa10.92□□□□□ -0.66
COL6A3-207ENST00000433762 BUB1B-PAK6H3BSN5 160 aa10.92□□□□□ -0.66
COL6A3-207ENST00000433762 GAGE1Q13065 139 aa10.92□□□□□ -0.66
COL6A3-207ENST00000433762 TNXAQ16473 311 aa10.92□□□□□ -0.66
COL6A3-207ENST00000433762 ABHD17AQ96GS6 310 aa10.92□□□□□ -0.66
COL6A3-207ENST00000433762 UQCR10Q9UDW1 63 aa10.92□□□□□ -0.66
COL6A3-207ENST00000433762 HIGD1AQ9Y241 93 aa10.92□□□□□ -0.66
COL6A3-207ENST00000433762 PAM16Q9Y3D7 125 aa10.92□□□□□ -0.66
COL6A3-207ENST00000433762 DSPP15924 2871 aaKnown RBP10.92□□□□□ -0.66
COL6A3-207ENST00000433762 TEX22C9J3V5 150 aa10.91□□□□□ -0.66
COL6A3-207ENST00000433762 NPIPB6E9PJ23 425 aa10.91□□□□□ -0.66
COL6A3-207ENST00000433762 TCRAP04437 139 aa10.91□□□□□ -0.66
COL6A3-207ENST00000433762 HOXB4P17483 251 aaPredicted RBP10.91□□□□□ -0.66
COL6A3-207ENST00000433762 HBBP68871 147 aa10.91□□□□□ -0.66
COL6A3-207ENST00000433762 NHLRC2Q8NBF2 726 aa10.91□□□□□ -0.66
COL6A3-207ENST00000433762 C1RLQ9NZP8 487 aa10.91□□□□□ -0.66
COL6A3-207ENST00000433762 INSIG2Q9Y5U4 225 aa10.91□□□□□ -0.66
COL6A3-207ENST00000433762 ARFGEF3Q5TH69 2177 aa10.91□□□□□ -0.66
COL6A3-207ENST00000433762 ENSAO43768 121 aaKnown RBP10.91□□□□□ -0.66
COL6A3-207ENST00000433762 C3orf79P0CE67 100 aa10.91□□□□□ -0.66
COL6A3-207ENST00000433762 ORM2P19652 201 aa10.91□□□□□ -0.66
COL6A3-207ENST00000433762 CD33P20138 364 aa10.91□□□□□ -0.66
COL6A3-207ENST00000433762 PMCHP20382 165 aa10.91□□□□□ -0.66
COL6A3-207ENST00000433762 TDRG1Q3Y452 100 aa10.91□□□□□ -0.66
COL6A3-207ENST00000433762 RITA1Q96K30 269 aa10.91□□□□□ -0.66
COL6A3-207ENST00000433762 VKORC1Q9BQB6 163 aa10.91□□□□□ -0.66
COL6A3-207ENST00000433762 SSBP3Q9BWW4 388 aaPredicted RBP10.91□□□□□ -0.66
COL6A3-207ENST00000433762 TRAV34A0A0B4J273 112 aa10.9□□□□□ -0.66
COL6A3-207ENST00000433762 MOSP00540 346 aa10.9□□□□□ -0.66
COL6A3-207ENST00000433762 CA1P00915 261 aaPredicted RBP10.9□□□□□ -0.66
COL6A3-207ENST00000433762 CD3EP07766 207 aa10.9□□□□□ -0.66
COL6A3-207ENST00000433762 ZGRF1Q86YA3 2104 aa10.9□□□□□ -0.66
COL6A3-207ENST00000433762 FAM103A1Q9BTL3 118 aaKnown RBP10.9□□□□□ -0.66
COL6A3-207ENST00000433762 Q9H3A6 140 aa10.9□□□□□ -0.66
COL6A3-207ENST00000433762 RNF114Q9Y508 228 aa10.9□□□□□ -0.66
COL6A3-207ENST00000433762 IGLC1P0CG04 106 aa10.9□□□□□ -0.66
COL6A3-207ENST00000433762 GDF5OSQ5U4N7 250 aa10.9□□□□□ -0.66
COL6A3-207ENST00000433762 C16orf54Q6UWD8 224 aa10.9□□□□□ -0.66
COL6A3-207ENST00000433762 ZNF841Q6ZN19 808 aa10.9□□□□□ -0.66
COL6A3-207ENST00000433762 LYPD1Q8N2G4 141 aa10.9□□□□□ -0.66
COL6A3-207ENST00000433762 SPTBN4Q9H254 2564 aa10.9□□□□□ -0.67
COL6A3-207ENST00000433762 LY6LH3BQJ8 138 aa10.89□□□□□ -0.67
COL6A3-207ENST00000433762 HSBP1O75506 76 aa10.89□□□□□ -0.67
COL6A3-207ENST00000433762 P01737 135 aa10.89□□□□□ -0.67
COL6A3-207ENST00000433762 GNG5P63218 68 aa10.89□□□□□ -0.67
COL6A3-207ENST00000433762 FBXL19-AS1Q494R0 122 aa10.89□□□□□ -0.67
COL6A3-207ENST00000433762 HCP5Q6MZN7 132 aa10.89□□□□□ -0.67
COL6A3-207ENST00000433762 RBPMS2Q6ZRY4 209 aaKnown RBP10.89□□□□□ -0.67
COL6A3-207ENST00000433762 S100A7AQ86SG5 101 aa10.89□□□□□ -0.67
COL6A3-207ENST00000433762 CHCHD1Q96BP2 118 aaKnown RBP10.89□□□□□ -0.67
COL6A3-207ENST00000433762 I3L2K1 104 aa10.89□□□□□ -0.67
COL6A3-207ENST00000433762 FOXA3P55318 350 aaPredicted RBP10.89□□□□□ -0.67
COL6A3-207ENST00000433762 SPATA45Q537H7 98 aa10.89□□□□□ -0.67
COL6A3-207ENST00000433762 OR8B3Q8NGG8 313 aa10.89□□□□□ -0.67
COL6A3-207ENST00000433762 OR8B2Q96RD0 313 aa10.89□□□□□ -0.67
COL6A3-207ENST00000433762 DCHS1Q96JQ0 3298 aa10.89□□□□□ -0.67
COL6A3-207ENST00000433762 PIEZO1Q92508 2521 aa10.89□□□□□ -0.67
COL6A3-207ENST00000433762 MALRD1Q5VYJ5 2156 aa10.88□□□□□ -0.67
COL6A3-207ENST00000433762 IGLC2P0DOY2 106 aa10.88□□□□□ -0.67
COL6A3-207ENST00000433762 IGLC3P0DOY3 106 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms