RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 SVILO95425 2214 aa8.07□□□□□ -1.12
USP54-205ENST00000424265 ZG16O60844 167 aa8.06□□□□□ -1.12
USP54-205ENST00000424265 PRDX2P32119 198 aa8.06□□□□□ -1.12
USP54-205ENST00000424265 MRPL23Q16540 153 aaKnown RBP8.06□□□□□ -1.12
USP54-205ENST00000424265 OR4C13Q8NGP0 309 aa8.06□□□□□ -1.12
USP54-205ENST00000424265 HSD17B10Q99714 261 aaKnown RBP8.06□□□□□ -1.12
USP54-205ENST00000424265 WNT2P09544 360 aa8.06□□□□□ -1.12
USP54-205ENST00000424265 REG1BP48304 166 aa8.06□□□□□ -1.12
USP54-205ENST00000424265 MFAP2P55001 183 aa8.06□□□□□ -1.12
USP54-205ENST00000424265 FXYD3Q14802 87 aa8.06□□□□□ -1.12
USP54-205ENST00000424265 ZNF726P1Q15940 193 aa8.06□□□□□ -1.12
USP54-205ENST00000424265 OR8A1Q8NGG7 326 aa8.06□□□□□ -1.12
USP54-205ENST00000424265 TMEM147Q9BVK8 224 aa8.06□□□□□ -1.12
USP54-205ENST00000424265 H3BMG7 143 aa8.06□□□□□ -1.12
USP54-205ENST00000424265 TMPRSS2O15393 492 aa8.06□□□□□ -1.12
USP54-205ENST00000424265 GNB1P62873 340 aa8.06□□□□□ -1.12
USP54-205ENST00000424265 ZNF524Q96C55 264 aa8.06□□□□□ -1.12
USP54-205ENST00000424265 TMEM222Q9H0R3 208 aa8.06□□□□□ -1.12
USP54-205ENST00000424265 TIMM9Q9Y5J7 89 aa8.06□□□□□ -1.12
USP54-205ENST00000424265 SYNGR2O43760 224 aa8.06□□□□□ -1.12
USP54-205ENST00000424265 NDUFV3P56181 108 aaKnown RBP8.06□□□□□ -1.12
USP54-205ENST00000424265 FAM159AQ6UWV7 190 aa8.06□□□□□ -1.12
USP54-205ENST00000424265 TMEM14DPA8MWL7 114 aa8.06□□□□□ -1.12
USP54-205ENST00000424265 J3QKU1 62 aa8.06□□□□□ -1.12
USP54-205ENST00000424265 NAPSAO96009 420 aa8.06□□□□□ -1.12
USP54-205ENST00000424265 OCC1Q8TAD7 63 aa8.06□□□□□ -1.12
USP54-205ENST00000424265 K7EM74 188 aa8.05□□□□□ -1.12
USP54-205ENST00000424265 WIPF3A6NGB9 483 aa8.05□□□□□ -1.12
USP54-205ENST00000424265 CCL8P80075 99 aa8.05□□□□□ -1.12
USP54-205ENST00000424265 FOXI1Q12951 378 aa8.05□□□□□ -1.12
USP54-205ENST00000424265 PLGLAQ15195 96 aa8.05□□□□□ -1.12
USP54-205ENST00000424265 OR1L1Q8NH94 360 aa8.05□□□□□ -1.12
USP54-205ENST00000424265 TM2D1Q9BX74 207 aa8.05□□□□□ -1.12
USP54-205ENST00000424265 SIGLEC8Q9NYZ4 499 aa8.05□□□□□ -1.12
USP54-205ENST00000424265 TPRP12270 2363 aaKnown RBP8.05□□□□□ -1.12
USP54-205ENST00000424265 IGLV1-44P01699 117 aa8.05□□□□□ -1.12
USP54-205ENST00000424265 LINC00310P59036 64 aa8.05□□□□□ -1.12
USP54-205ENST00000424265 FBXL19-AS1Q494R0 122 aa8.05□□□□□ -1.12
USP54-205ENST00000424265 TMEM42Q69YG0 159 aa8.05□□□□□ -1.12
USP54-205ENST00000424265 OR1L8Q8NGR8 309 aa8.05□□□□□ -1.12
USP54-205ENST00000424265 FAM234AQ9H0X4 552 aa8.05□□□□□ -1.12
USP54-205ENST00000424265 KLF12Q9Y4X4 402 aa8.05□□□□□ -1.12
USP54-205ENST00000424265 TRAV8-2A0A0B4J237 113 aa8.05□□□□□ -1.12
USP54-205ENST00000424265 C9orf153Q5TBE3 101 aa8.05□□□□□ -1.12
USP54-205ENST00000424265 Q8NA96 180 aa8.05□□□□□ -1.12
USP54-205ENST00000424265 Q96M66 194 aa8.05□□□□□ -1.12
USP54-205ENST00000424265 C1orf43Q9BWL3 253 aa8.05□□□□□ -1.12
USP54-205ENST00000424265 OR2W1Q9Y3N9 320 aa8.05□□□□□ -1.12
USP54-205ENST00000424265 AREGP15514 252 aa8.04□□□□□ -1.12
USP54-205ENST00000424265 PSMB2P49721 201 aa8.04□□□□□ -1.12
USP54-205ENST00000424265 TMEM116Q8NCL8 245 aa8.04□□□□□ -1.12
USP54-205ENST00000424265 PPDPFLQ8WWR9 84 aa8.04□□□□□ -1.12
USP54-205ENST00000424265 SLC25A10Q9UBX3 287 aaPredicted RBP8.04□□□□□ -1.12
USP54-205ENST00000424265 CEP350Q5VT06 3117 aa8.04□□□□□ -1.12
USP54-205ENST00000424265 IGHV3-64DA0A0J9YX35 117 aa8.04□□□□□ -1.12
USP54-205ENST00000424265 ZNHIT1O43257 154 aa8.04□□□□□ -1.12
USP54-205ENST00000424265 IBA57Q5T440 356 aaKnown RBP8.04□□□□□ -1.12
USP54-205ENST00000424265 BCL6BQ8N143 479 aaPredicted RBP8.04□□□□□ -1.12
USP54-205ENST00000424265 LOC107984156A0A0G2JMH3 177 aa8.04□□□□□ -1.12
USP54-205ENST00000424265 LMX1BO60663 402 aa8.04□□□□□ -1.12
USP54-205ENST00000424265 CGAP01215 116 aa8.04□□□□□ -1.12
USP54-205ENST00000424265 CSN3P07498 182 aa8.04□□□□□ -1.12
USP54-205ENST00000424265 ARL17AQ8IVW1 177 aa8.04□□□□□ -1.12
USP54-205ENST00000424265 ZNF525Q8N782 197 aa8.04□□□□□ -1.12
USP54-205ENST00000424265 FGFBP3Q8TAT2 258 aa8.04□□□□□ -1.12
USP54-205ENST00000424265 TNFRSF19Q9NS68 423 aa8.04□□□□□ -1.12
USP54-205ENST00000424265 SCO2A0A1W2PP80 73 aa8.04□□□□□ -1.12
USP54-205ENST00000424265 SMAD7O15105 426 aaKnown RBP8.04□□□□□ -1.12
USP54-205ENST00000424265 SCGB1C2P0DMR2 95 aa8.04□□□□□ -1.12
USP54-205ENST00000424265 FOXG1P55316 489 aaPredicted RBP8.04□□□□□ -1.12
USP54-205ENST00000424265 OR51H1Q8NH63 302 aa8.04□□□□□ -1.12
USP54-205ENST00000424265 CHCHD1Q96BP2 118 aaKnown RBP8.04□□□□□ -1.12
USP54-205ENST00000424265 RPL8P62917 257 aaKnown RBP8.03□□□□□ -1.12
USP54-205ENST00000424265 DNAJC30Q96LL9 226 aa8.03□□□□□ -1.12
USP54-205ENST00000424265 IZUMO1RA6ND01 250 aa8.03□□□□□ -1.12
USP54-205ENST00000424265 MPV17P39210 176 aa8.03□□□□□ -1.12
USP54-205ENST00000424265 CX3CL1P78423 397 aa8.03□□□□□ -1.12
USP54-205ENST00000424265 PPP1R27Q86WC6 154 aa8.03□□□□□ -1.12
USP54-205ENST00000424265 DNAJC13O75165 2243 aa8.03□□□□□ -1.12
USP54-205ENST00000424265 TUSC2O75896 110 aa8.03□□□□□ -1.12
USP54-205ENST00000424265 IL4P05112 153 aa8.03□□□□□ -1.12
USP54-205ENST00000424265 CACNG5Q9UF02 275 aa8.03□□□□□ -1.12
USP54-205ENST00000424265 MOSP00540 346 aa8.03□□□□□ -1.12
USP54-205ENST00000424265 PPIFP30405 207 aaKnown RBP8.03□□□□□ -1.12
USP54-205ENST00000424265 MRAPQ8TCY5 172 aa8.03□□□□□ -1.12
USP54-205ENST00000424265 HDHD3Q9BSH5 251 aaPredicted RBP8.03□□□□□ -1.12
USP54-205ENST00000424265 ZNF688P0C7X2 276 aa8.02□□□□□ -1.13
USP54-205ENST00000424265 LYZL4Q96KX0 146 aa8.02□□□□□ -1.13
USP54-205ENST00000424265 SSUH2Q9Y2M2 353 aa8.02□□□□□ -1.13
USP54-205ENST00000424265 BDP1A6H8Y1 2624 aa8.02□□□□□ -1.13
USP54-205ENST00000424265 SRSF2Q01130 221 aaKnown RBP8.02□□□□□ -1.13
USP54-205ENST00000424265 ZNF672Q499Z4 452 aaPredicted RBP8.02□□□□□ -1.13
USP54-205ENST00000424265 SLC35E4Q6ICL7 350 aa8.02□□□□□ -1.13
USP54-205ENST00000424265 PRSS3P2Q8NHM4 247 aa8.02□□□□□ -1.13
USP54-205ENST00000424265 ASCL2Q99929 193 aa8.02□□□□□ -1.13
USP54-205ENST00000424265 OR2H2O95918 312 aa8.02□□□□□ -1.13
USP54-205ENST00000424265 ACP7Q6ZNF0 438 aa8.02□□□□□ -1.13
USP54-205ENST00000424265 DNAH12Q6ZR08 3092 aa8.02□□□□□ -1.13
USP54-205ENST00000424265 TRAV24A0A0B4J272 114 aa8.02□□□□□ -1.13
USP54-205ENST00000424265 SLC25A5P05141 298 aaKnown RBP8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 97.5 ms