RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 H3BMM0 161 aa5.72□□□□□ -1.49
SCN1A-204ENST00000423058 HLA-DQB1P01920 261 aa5.72□□□□□ -1.49
SCN1A-204ENST00000423058 LHX2P50458 406 aa5.72□□□□□ -1.49
SCN1A-204ENST00000423058 FOXA3P55318 350 aaPredicted RBP5.72□□□□□ -1.49
SCN1A-204ENST00000423058 C15orf32Q32M92 178 aa5.72□□□□□ -1.49
SCN1A-204ENST00000423058 MORN2Q502X0 79 aa5.72□□□□□ -1.49
SCN1A-204ENST00000423058 ACTL10Q5JWF8 245 aa5.72□□□□□ -1.49
SCN1A-204ENST00000423058 CHCHD1Q96BP2 118 aaKnown RBP5.72□□□□□ -1.49
SCN1A-204ENST00000423058 SNHG12Q9BXW3 62 aa5.72□□□□□ -1.49
SCN1A-204ENST00000423058 FOXL2P58012 376 aa5.72□□□□□ -1.49
SCN1A-204ENST00000423058 GPHA2Q96T91 129 aa5.72□□□□□ -1.49
SCN1A-204ENST00000423058 RFPL3SP0C7P2 107 aa5.71□□□□□ -1.49
SCN1A-204ENST00000423058 LINC00614P0C842 121 aa5.71□□□□□ -1.49
SCN1A-204ENST00000423058 DDTP30046 118 aa5.71□□□□□ -1.49
SCN1A-204ENST00000423058 ZNF497Q6ZNH5 498 aa5.71□□□□□ -1.49
SCN1A-204ENST00000423058 APCDD1LQ8NCL9 501 aa5.71□□□□□ -1.49
SCN1A-204ENST00000423058 MDKP21741 143 aaPredicted RBP5.71□□□□□ -1.49
SCN1A-204ENST00000423058 HIST1H4AP62805 103 aaKnown RBP5.71□□□□□ -1.49
SCN1A-204ENST00000423058 PUSL1Q8N0Z8 303 aaKnown RBP5.71□□□□□ -1.49
SCN1A-204ENST00000423058 ST6GALNAC3Q8NDV1 305 aa5.71□□□□□ -1.49
SCN1A-204ENST00000423058 EPDR1Q9UM22 224 aa5.71□□□□□ -1.49
SCN1A-204ENST00000423058 CENPVL1A0A0U1RR11 272 aa5.71□□□□□ -1.5
SCN1A-204ENST00000423058 H0YL77 283 aa5.71□□□□□ -1.5
SCN1A-204ENST00000423058 TIAF1O95411 115 aa5.71□□□□□ -1.5
SCN1A-204ENST00000423058 DAD1P61803 113 aa5.71□□□□□ -1.5
SCN1A-204ENST00000423058 RNF5Q99942 180 aa5.71□□□□□ -1.5
SCN1A-204ENST00000423058 NPDC1Q9NQX5 325 aaPredicted RBP5.71□□□□□ -1.5
SCN1A-204ENST00000423058 PLCE1Q9P212 2302 aa5.71□□□□□ -1.5
SCN1A-204ENST00000423058 VCYO14598 125 aa5.71□□□□□ -1.5
SCN1A-204ENST00000423058 C1QL1O75973 258 aa5.71□□□□□ -1.5
SCN1A-204ENST00000423058 TMEM249Q2WGJ8 235 aa5.71□□□□□ -1.5
SCN1A-204ENST00000423058 GAGE2EQ4V326 116 aa5.71□□□□□ -1.5
SCN1A-204ENST00000423058 FAM90A2PQ658T7 463 aa5.71□□□□□ -1.5
SCN1A-204ENST00000423058 THAP8Q8NA92 274 aa5.71□□□□□ -1.5
SCN1A-204ENST00000423058 CTHRC1Q96CG8 243 aa5.71□□□□□ -1.5
SCN1A-204ENST00000423058 CHAC1Q9BUX1 264 aa5.71□□□□□ -1.5
SCN1A-204ENST00000423058 GAGE2DQ9UEU5 116 aa5.71□□□□□ -1.5
SCN1A-204ENST00000423058 INAFM2P0DMQ5 153 aa5.71□□□□□ -1.5
SCN1A-204ENST00000423058 A8MWV9 139 aa5.71□□□□□ -1.5
SCN1A-204ENST00000423058 UCP1P25874 307 aa5.71□□□□□ -1.5
SCN1A-204ENST00000423058 RCC1LQ96I51 464 aaKnown RBP5.71□□□□□ -1.5
SCN1A-204ENST00000423058 IMMP2LQ96T52 175 aa5.71□□□□□ -1.5
SCN1A-204ENST00000423058 FREM1Q5H8C1 2179 aa5.71□□□□□ -1.5
SCN1A-204ENST00000423058 IGHV3OR16-8A0A075B7F1 116 aa5.71□□□□□ -1.5
SCN1A-204ENST00000423058 A0A087WWC5 75 aa5.71□□□□□ -1.5
SCN1A-204ENST00000423058 TRBV5-3A0A0A0MS03 114 aa5.71□□□□□ -1.5
SCN1A-204ENST00000423058 FUT5Q11128 374 aa5.71□□□□□ -1.5
SCN1A-204ENST00000423058 ATP5L2Q7Z4Y8 100 aa5.71□□□□□ -1.5
SCN1A-204ENST00000423058 MUC21A0A0G2JKD1 596 aa5.7□□□□□ -1.5
SCN1A-204ENST00000423058 MUC21A0A140T8X8 626 aa5.7□□□□□ -1.5
SCN1A-204ENST00000423058 CXCL2P19875 107 aa5.7□□□□□ -1.5
SCN1A-204ENST00000423058 CT83Q5H943 113 aa5.7□□□□□ -1.5
SCN1A-204ENST00000423058 C17orf98A8MV24 154 aa5.7□□□□□ -1.5
SCN1A-204ENST00000423058 ZNF660Q6AZW8 331 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-204ENST00000423058 C8orf82Q6P1X6 216 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-204ENST00000423058 KIAA1671Q9BY89 1806 aa5.7□□□□□ -1.5
SCN1A-204ENST00000423058 TMEM14DPA8MWL7 114 aa5.7□□□□□ -1.5
SCN1A-204ENST00000423058 CCL1P22362 96 aa5.7□□□□□ -1.5
SCN1A-204ENST00000423058 TFF3Q07654 80 aa5.7□□□□□ -1.5
SCN1A-204ENST00000423058 FBLIM1Q8WUP2 373 aa5.7□□□□□ -1.5
SCN1A-204ENST00000423058 IGHV2-26A0A0B4J1V2 119 aa5.7□□□□□ -1.5
SCN1A-204ENST00000423058 IGLV3-19P01714 112 aa5.7□□□□□ -1.5
SCN1A-204ENST00000423058 LINC00271P0C7V0 271 aa5.7□□□□□ -1.5
SCN1A-204ENST00000423058 EVI2AP22794 236 aa5.7□□□□□ -1.5
SCN1A-204ENST00000423058 IGLV3-21P80748 117 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-204ENST00000423058 EIF4EBP2Q13542 120 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-204ENST00000423058 FBLN7Q53RD9 439 aa5.7□□□□□ -1.5
SCN1A-204ENST00000423058 RFLNBQ8N5W9 214 aa5.7□□□□□ -1.5
SCN1A-204ENST00000423058 PSG8Q9UQ74 426 aa5.7□□□□□ -1.5
SCN1A-204ENST00000423058 A0A1W2PR77 199 aa5.7□□□□□ -1.5
SCN1A-204ENST00000423058 SLC17A3O00476 420 aa5.7□□□□□ -1.5
SCN1A-204ENST00000423058 ZNF672Q499Z4 452 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-204ENST00000423058 UBE2WQ96B02 151 aa5.7□□□□□ -1.5
SCN1A-204ENST00000423058 PRDM6Q9NQX0 595 aa5.7□□□□□ -1.5
SCN1A-204ENST00000423058 MYMXA0A1B0GTQ4 84 aa5.7□□□□□ -1.5
SCN1A-204ENST00000423058 CTAG1AP78358 180 aa5.7□□□□□ -1.5
SCN1A-204ENST00000423058 CCL20P78556 96 aa5.7□□□□□ -1.5
SCN1A-204ENST00000423058 PLA2G10O15496 165 aa5.69□□□□□ -1.5
SCN1A-204ENST00000423058 CELA3AP09093 270 aa5.69□□□□□ -1.5
SCN1A-204ENST00000423058 A0A1B0GV90 55 aa5.69□□□□□ -1.5
SCN1A-204ENST00000423058 F5H768 121 aa5.69□□□□□ -1.5
SCN1A-204ENST00000423058 CELA3BP08861 270 aa5.69□□□□□ -1.5
SCN1A-204ENST00000423058 GNLYP22749 145 aa5.69□□□□□ -1.5
SCN1A-204ENST00000423058 ZNF138P52744 262 aa5.69□□□□□ -1.5
SCN1A-204ENST00000423058 MIR17HGQ75NE6 70 aa5.69□□□□□ -1.5
SCN1A-204ENST00000423058 LURAP1LQ8IV03 231 aa5.69□□□□□ -1.5
SCN1A-204ENST00000423058 IMMP1LQ96LU5 166 aa5.69□□□□□ -1.5
SCN1A-204ENST00000423058 PKDREJQ9NTG1 2253 aa5.69□□□□□ -1.5
SCN1A-204ENST00000423058 ADAMTS9Q9P2N4 1935 aa5.69□□□□□ -1.5
SCN1A-204ENST00000423058 SIGLEC5O15389 551 aa5.69□□□□□ -1.5
SCN1A-204ENST00000423058 H3BUX3 64 aa5.69□□□□□ -1.5
SCN1A-204ENST00000423058 C9orf139Q6ZV77 190 aa5.69□□□□□ -1.5
SCN1A-204ENST00000423058 C14orf144Q96I85 54 aa5.69□□□□□ -1.5
SCN1A-204ENST00000423058 SRSF8Q9BRL6 282 aaKnown RBP5.69□□□□□ -1.5
SCN1A-204ENST00000423058 GNB1LQ9BYB4 327 aa5.69□□□□□ -1.5
SCN1A-204ENST00000423058 MED12LQ86YW9 2145 aa5.69□□□□□ -1.5
SCN1A-204ENST00000423058 SRRM4A7MD48 611 aaKnown RBP5.69□□□□□ -1.5
SCN1A-204ENST00000423058 CCL3L1P16619 93 aa5.69□□□□□ -1.5
SCN1A-204ENST00000423058 FAM201AQ5SY85 155 aa5.69□□□□□ -1.5
SCN1A-204ENST00000423058 TMEM219Q86XT9 240 aa5.69□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms