RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 CLEC3BP05452 202 aa13.3□□□□□ -0.28
CCDC28B-202ENST00000421922 H2AFB1P0C5Y9 115 aa13.3□□□□□ -0.28
CCDC28B-202ENST00000421922 CDC34P49427 236 aaPredicted RBP13.3□□□□□ -0.28
CCDC28B-202ENST00000421922 YPEL3P61236 119 aaPredicted RBP13.3□□□□□ -0.28
CCDC28B-202ENST00000421922 PXDC1Q5TGL8 231 aa13.3□□□□□ -0.28
CCDC28B-202ENST00000421922 S100A7AQ86SG5 101 aa13.3□□□□□ -0.28
CCDC28B-202ENST00000421922 OR51G1Q8NGK1 321 aa13.3□□□□□ -0.28
CCDC28B-202ENST00000421922 CCDC140Q96MF4 163 aa13.3□□□□□ -0.28
CCDC28B-202ENST00000421922 C19orf24Q9BVV8 132 aa13.3□□□□□ -0.28
CCDC28B-202ENST00000421922 SLC25A22Q9H936 323 aa13.3□□□□□ -0.28
CCDC28B-202ENST00000421922 PLA2G2EQ9NZK7 142 aa13.3□□□□□ -0.28
CCDC28B-202ENST00000421922 DOK5Q9P104 306 aa13.3□□□□□ -0.28
CCDC28B-202ENST00000421922 CTXND1A0A1B0GTU2 59 aa13.3□□□□□ -0.28
CCDC28B-202ENST00000421922 YIF1AO95070 293 aa13.3□□□□□ -0.28
CCDC28B-202ENST00000421922 IGKV1-17P01599 117 aa13.3□□□□□ -0.28
CCDC28B-202ENST00000421922 OR5G3P0C626 314 aa13.3□□□□□ -0.28
CCDC28B-202ENST00000421922 PSG1P11464 419 aa13.3□□□□□ -0.28
CCDC28B-202ENST00000421922 ORM2P19652 201 aa13.3□□□□□ -0.28
CCDC28B-202ENST00000421922 ARL3P36405 182 aa13.3□□□□□ -0.28
CCDC28B-202ENST00000421922 FHITP49789 147 aa13.3□□□□□ -0.28
CCDC28B-202ENST00000421922 RELQ04864 619 aaPredicted RBP13.3□□□□□ -0.28
CCDC28B-202ENST00000421922 KHDC1LQ5JSQ8 128 aa13.3□□□□□ -0.28
CCDC28B-202ENST00000421922 C10orf99Q6UWK7 81 aa13.3□□□□□ -0.28
CCDC28B-202ENST00000421922 OR5AU1Q8NGC0 362 aa13.3□□□□□ -0.28
CCDC28B-202ENST00000421922 OR1B1Q8NGR6 318 aa13.3□□□□□ -0.28
CCDC28B-202ENST00000421922 PBDC1Q9BVG4 233 aa13.3□□□□□ -0.28
CCDC28B-202ENST00000421922 F8W735 103 aaPredicted RBP13.29□□□□□ -0.28
CCDC28B-202ENST00000421922 HYPMO75409 117 aa13.29□□□□□ -0.28
CCDC28B-202ENST00000421922 RPLP1P05386 114 aaKnown RBP13.29□□□□□ -0.28
CCDC28B-202ENST00000421922 NDUFA5Q16718 116 aa13.29□□□□□ -0.28
CCDC28B-202ENST00000421922 GCSAMLQ5JQS6 135 aa13.29□□□□□ -0.28
CCDC28B-202ENST00000421922 C10orf113Q5VZT2 155 aa13.29□□□□□ -0.28
CCDC28B-202ENST00000421922 ZNF600Q6ZNG1 722 aa13.29□□□□□ -0.28
CCDC28B-202ENST00000421922 GATAD1Q8WUU5 269 aa13.29□□□□□ -0.28
CCDC28B-202ENST00000421922 RCC1LQ96I51 464 aaKnown RBP13.29□□□□□ -0.28
CCDC28B-202ENST00000421922 HRH4Q9H3N8 390 aa13.29□□□□□ -0.28
CCDC28B-202ENST00000421922 ELOA3CA0A087WX78 387 aaPredicted RBP13.28□□□□□ -0.28
CCDC28B-202ENST00000421922 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.28□□□□□ -0.28
CCDC28B-202ENST00000421922 MAP1LC3B2A6NCE7 125 aa13.28□□□□□ -0.28
CCDC28B-202ENST00000421922 IL4P05112 153 aa13.28□□□□□ -0.28
CCDC28B-202ENST00000421922 CTSGP08311 255 aa13.28□□□□□ -0.28
CCDC28B-202ENST00000421922 S100A7P31151 101 aa13.28□□□□□ -0.28
CCDC28B-202ENST00000421922 FAM78BQ5VT40 261 aa13.28□□□□□ -0.28
CCDC28B-202ENST00000421922 LCN15Q6UWW0 184 aa13.28□□□□□ -0.28
CCDC28B-202ENST00000421922 SFT2D1Q8WV19 159 aa13.28□□□□□ -0.28
CCDC28B-202ENST00000421922 MDFIQ99750 246 aa13.28□□□□□ -0.28
CCDC28B-202ENST00000421922 MRPL32Q9BYC8 188 aaKnown RBP13.28□□□□□ -0.28
CCDC28B-202ENST00000421922 MAP1LC3BQ9GZQ8 125 aa13.28□□□□□ -0.28
CCDC28B-202ENST00000421922 DNAJC4Q9NNZ3 241 aa13.28□□□□□ -0.28
CCDC28B-202ENST00000421922 HIGD1AQ9Y241 93 aa13.28□□□□□ -0.28
CCDC28B-202ENST00000421922 A0A1B0GV50 99 aa13.27□□□□□ -0.29
CCDC28B-202ENST00000421922 ANKRD34BA5PLL1 514 aa13.27□□□□□ -0.29
CCDC28B-202ENST00000421922 PPP5D1E7EU14 171 aa13.27□□□□□ -0.29
CCDC28B-202ENST00000421922 TAS2R45P59539 299 aa13.27□□□□□ -0.29
CCDC28B-202ENST00000421922 ZNF343Q6P1L6 599 aa13.27□□□□□ -0.29
CCDC28B-202ENST00000421922 IQCF2Q8IXL9 164 aa13.27□□□□□ -0.29
CCDC28B-202ENST00000421922 RPP25LQ8N5L8 163 aaKnown RBP13.27□□□□□ -0.29
CCDC28B-202ENST00000421922 ZNF491Q8N8L2 437 aa13.27□□□□□ -0.29
CCDC28B-202ENST00000421922 RNF152Q8N8N0 203 aa13.27□□□□□ -0.29
CCDC28B-202ENST00000421922 LINC01006Q8NI28 216 aa13.27□□□□□ -0.29
CCDC28B-202ENST00000421922 RNF125Q96EQ8 232 aa13.27□□□□□ -0.29
CCDC28B-202ENST00000421922 OR5B12Q96R08 314 aa13.27□□□□□ -0.29
CCDC28B-202ENST00000421922 CHRDL1Q9BU40 450 aa13.27□□□□□ -0.29
CCDC28B-202ENST00000421922 FUT9Q9Y231 359 aa13.27□□□□□ -0.29
CCDC28B-202ENST00000421922 SEC14L6B5MCN3 397 aa13.26□□□□□ -0.29
CCDC28B-202ENST00000421922 HAX1O00165 279 aa13.26□□□□□ -0.29
CCDC28B-202ENST00000421922 BMPR1BO00238 502 aa13.26□□□□□ -0.29
CCDC28B-202ENST00000421922 RAB24Q969Q5 203 aa13.26□□□□□ -0.29
CCDC28B-202ENST00000421922 UBE2E2Q96LR5 201 aa13.26□□□□□ -0.29
CCDC28B-202ENST00000421922 PEF1Q9UBV8 284 aaKnown RBP13.26□□□□□ -0.29
CCDC28B-202ENST00000421922 RNF114Q9Y508 228 aa13.26□□□□□ -0.29
CCDC28B-202ENST00000421922 PUS1Q9Y606 427 aaKnown RBP eCLIP13.26□□□□□ -0.29
CCDC28B-202ENST00000421922 GGCTO75223 188 aaKnown RBP13.25□□□□□ -0.29
CCDC28B-202ENST00000421922 LGALS1P09382 135 aaKnown RBP13.25□□□□□ -0.29
CCDC28B-202ENST00000421922 ADMP35318 185 aa13.25□□□□□ -0.29
CCDC28B-202ENST00000421922 PLP1P60201 277 aa13.25□□□□□ -0.29
CCDC28B-202ENST00000421922 TECRQ9NZ01 308 aaKnown RBP13.25□□□□□ -0.29
CCDC28B-202ENST00000421922 IGHV3-35A0A0C4DH35 117 aa13.24□□□□□ -0.29
CCDC28B-202ENST00000421922 CLPSL1A2RUU4 121 aa13.24□□□□□ -0.29
CCDC28B-202ENST00000421922 NUDT19A8MXV4 375 aa13.24□□□□□ -0.29
CCDC28B-202ENST00000421922 HMGB3O15347 200 aaKnown RBP13.24□□□□□ -0.29
CCDC28B-202ENST00000421922 OR2C1O95371 312 aa13.24□□□□□ -0.29
CCDC28B-202ENST00000421922 KHDC3LQ587J8 217 aa13.24□□□□□ -0.29
CCDC28B-202ENST00000421922 LINC00305Q7Z4B0 112 aa13.24□□□□□ -0.29
CCDC28B-202ENST00000421922 COMMD7Q86VX2 200 aa13.24□□□□□ -0.29
CCDC28B-202ENST00000421922 PRIMA1Q86XR5 153 aa13.24□□□□□ -0.29
CCDC28B-202ENST00000421922 MBD3L1Q8WWY6 194 aa13.24□□□□□ -0.29
CCDC28B-202ENST00000421922 RABAC1Q9UI14 185 aa13.24□□□□□ -0.29
CCDC28B-202ENST00000421922 A0A1B0GUS0 222 aa13.23□□□□□ -0.29
CCDC28B-202ENST00000421922 FGF8P55075 233 aaPredicted RBP13.23□□□□□ -0.29
CCDC28B-202ENST00000421922 SRSF2Q01130 221 aaKnown RBP13.23□□□□□ -0.29
CCDC28B-202ENST00000421922 ZNF726P1Q15940 193 aa13.23□□□□□ -0.29
CCDC28B-202ENST00000421922 IL34Q6ZMJ4 242 aa13.23□□□□□ -0.29
CCDC28B-202ENST00000421922 MYOZ3Q8TDC0 251 aa13.23□□□□□ -0.29
CCDC28B-202ENST00000421922 TMEM37Q8WXS4 190 aa13.23□□□□□ -0.29
CCDC28B-202ENST00000421922 RNF24Q9Y225 148 aa13.23□□□□□ -0.29
CCDC28B-202ENST00000421922 WI2-2373I1.2A0A1W2PRP0 233 aa13.22□□□□□ -0.29
CCDC28B-202ENST00000421922 LINC00862A6NCI5 91 aa13.22□□□□□ -0.29
CCDC28B-202ENST00000421922 OR7C2O60412 319 aa13.22□□□□□ -0.29
CCDC28B-202ENST00000421922 CXorf1O96002 111 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 123.4 ms