RNA–Protein interactions for RNA: ENST00000413409.6

PTPRC-206, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best) BASIC

Gene PTPRC, Length 1,338 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-206ENST00000413409 LHFPL4Q7Z7J7 247 aa13.5□□□□□ -0.25
PTPRC-206ENST00000413409 OR1L4Q8NGR5 311 aa13.5□□□□□ -0.25
PTPRC-206ENST00000413409 OR2T6Q8NHC8 308 aa13.5□□□□□ -0.25
PTPRC-206ENST00000413409 MALSU1Q96EH3 234 aa13.5□□□□□ -0.25
PTPRC-206ENST00000413409 EAF1Q96JC9 268 aaPredicted RBP13.5□□□□□ -0.25
PTPRC-206ENST00000413409 PFDN5Q99471 154 aa13.5□□□□□ -0.25
PTPRC-206ENST00000413409 CITED1Q99966 193 aa13.5□□□□□ -0.25
PTPRC-206ENST00000413409 CTDSP1Q9GZU7 261 aa13.5□□□□□ -0.25
PTPRC-206ENST00000413409 SEPSECSQ9HD40 501 aaKnown RBP13.5□□□□□ -0.25
PTPRC-206ENST00000413409 HILPDAQ9Y5L2 63 aa13.5□□□□□ -0.25
PTPRC-206ENST00000413409 IGKV1D-37A0A075B6S9 117 aa13.49□□□□□ -0.25
PTPRC-206ENST00000413409 REG1AP05451 166 aa13.49□□□□□ -0.25
PTPRC-206ENST00000413409 UBE2E1P51965 193 aa13.49□□□□□ -0.25
PTPRC-206ENST00000413409 MFAP2P55001 183 aa13.49□□□□□ -0.25
PTPRC-206ENST00000413409 LGALS4P56470 323 aa13.49□□□□□ -0.25
PTPRC-206ENST00000413409 BPIFB3P59826 476 aa13.49□□□□□ -0.25
PTPRC-206ENST00000413409 KRTAP10-3P60369 221 aa13.49□□□□□ -0.25
PTPRC-206ENST00000413409 MLANAQ16655 118 aa13.49□□□□□ -0.25
PTPRC-206ENST00000413409 TMEM241Q24JQ0 296 aa13.49□□□□□ -0.25
PTPRC-206ENST00000413409 FAM78BQ5VT40 261 aa13.49□□□□□ -0.25
PTPRC-206ENST00000413409 MIR17HGQ75NE6 70 aa13.49□□□□□ -0.25
PTPRC-206ENST00000413409 Q8N6K4 173 aa13.49□□□□□ -0.25
PTPRC-206ENST00000413409 OR1L6Q8NGR2 347 aa13.49□□□□□ -0.25
PTPRC-206ENST00000413409 RPUSD4Q96CM3 377 aaKnown RBP13.49□□□□□ -0.25
PTPRC-206ENST00000413409 TRGV9Q99603 122 aa13.49□□□□□ -0.25
PTPRC-206ENST00000413409 MLXQ9UH92 298 aa13.49□□□□□ -0.25
PTPRC-206ENST00000413409 EPPK1P58107 5090 aaKnown RBP13.49□□□□□ -0.25
PTPRC-206ENST00000413409 M0QZ24 198 aa13.48□□□□□ -0.25
PTPRC-206ENST00000413409 TOX4O94842 621 aa13.48□□□□□ -0.25
PTPRC-206ENST00000413409 CRYBA1P05813 215 aa13.48□□□□□ -0.25
PTPRC-206ENST00000413409 ATP5G3P48201 142 aa13.48□□□□□ -0.25
PTPRC-206ENST00000413409 RND2P52198 227 aa13.48□□□□□ -0.25
PTPRC-206ENST00000413409 C5orf64Q2M2E5 130 aa13.48□□□□□ -0.25
PTPRC-206ENST00000413409 TMEM116Q8NCL8 245 aa13.48□□□□□ -0.25
PTPRC-206ENST00000413409 NPIPB3Q92617 1050 aa13.48□□□□□ -0.25
PTPRC-206ENST00000413409 C11orf52Q96A22 123 aa13.48□□□□□ -0.25
PTPRC-206ENST00000413409 TBX15Q96SF7 602 aa13.48□□□□□ -0.25
PTPRC-206ENST00000413409 CLDN34H7C241 214 aa13.47□□□□□ -0.25
PTPRC-206ENST00000413409 PRB2P02812 416 aaPredicted RBP13.47□□□□□ -0.25
PTPRC-206ENST00000413409 UBE2G2P60604 165 aa13.47□□□□□ -0.25
PTPRC-206ENST00000413409 KLF17Q5JT82 389 aaPredicted RBP13.47□□□□□ -0.25
PTPRC-206ENST00000413409 CST9LP1Q5W188 147 aa13.47□□□□□ -0.25
PTPRC-206ENST00000413409 ISOC2Q96AB3 205 aa13.47□□□□□ -0.25
PTPRC-206ENST00000413409 MISP3Q96FF7 219 aa13.47□□□□□ -0.25
PTPRC-206ENST00000413409 DOK5Q9P104 306 aa13.47□□□□□ -0.25
PTPRC-206ENST00000413409 FCN1O00602 326 aa13.46□□□□□ -0.25
PTPRC-206ENST00000413409 C8orf88P0DMB2 117 aa13.46□□□□□ -0.25
PTPRC-206ENST00000413409 CTRB1P17538 263 aa13.46□□□□□ -0.25
PTPRC-206ENST00000413409 RAB5AP20339 215 aa13.46□□□□□ -0.25
PTPRC-206ENST00000413409 RPL23P62829 140 aaKnown RBP13.46□□□□□ -0.25
PTPRC-206ENST00000413409 SSX2Q16385 188 aa13.46□□□□□ -0.25
PTPRC-206ENST00000413409 ZNF674Q2M3X9 581 aa13.46□□□□□ -0.25
PTPRC-206ENST00000413409 CTRB2Q6GPI1 263 aa13.46□□□□□ -0.25
PTPRC-206ENST00000413409 MRPL36Q9P0J6 103 aaKnown RBP13.46□□□□□ -0.25
PTPRC-206ENST00000413409 SOX21Q9Y651 276 aaPredicted RBP13.46□□□□□ -0.25
PTPRC-206ENST00000413409 COL7A1Q02388 2944 aa13.46□□□□□ -0.26
PTPRC-206ENST00000413409 DNAH3Q8TD57 4116 aa13.46□□□□□ -0.26
PTPRC-206ENST00000413409 COX7A2P2O60397 106 aa13.45□□□□□ -0.26
PTPRC-206ENST00000413409 CNIH1O95406 144 aa13.45□□□□□ -0.26
PTPRC-206ENST00000413409 NPPCP23582 126 aa13.45□□□□□ -0.26
PTPRC-206ENST00000413409 GATA2P23769 480 aaPredicted RBP13.45□□□□□ -0.26
PTPRC-206ENST00000413409 RAB5BP61020 215 aa13.45□□□□□ -0.26
PTPRC-206ENST00000413409 ADIRFQ15847 76 aa13.45□□□□□ -0.26
PTPRC-206ENST00000413409 DYNAPQ8N1N2 210 aa13.45□□□□□ -0.26
PTPRC-206ENST00000413409 FAM24BQ8N5W8 94 aa13.45□□□□□ -0.26
PTPRC-206ENST00000413409 UHRF2Q96PU4 802 aa13.45□□□□□ -0.26
PTPRC-206ENST00000413409 SLC25A33Q9BSK2 321 aa13.45□□□□□ -0.26
PTPRC-206ENST00000413409 DNAJC4Q9NNZ3 241 aa13.45□□□□□ -0.26
PTPRC-206ENST00000413409 TNFRSF19Q9NS68 423 aa13.45□□□□□ -0.26
PTPRC-206ENST00000413409 YTHDF2Q9Y5A9 579 aaKnown RBP13.45□□□□□ -0.26
PTPRC-206ENST00000413409 ELOA3CA0A087WX78 387 aaPredicted RBP13.44□□□□□ -0.26
PTPRC-206ENST00000413409 A0A1W2PRD5 423 aa13.44□□□□□ -0.26
PTPRC-206ENST00000413409 A0A1W2PRF3 423 aa13.44□□□□□ -0.26
PTPRC-206ENST00000413409 A0A1W2PRM7 423 aa13.44□□□□□ -0.26
PTPRC-206ENST00000413409 C1orf196B1AJZ1 125 aa13.44□□□□□ -0.26
PTPRC-206ENST00000413409 GATA3P23771 443 aa13.44□□□□□ -0.26
PTPRC-206ENST00000413409 HES1Q14469 280 aa13.44□□□□□ -0.26
PTPRC-206ENST00000413409 BEAN1Q3B7T3 259 aa13.44□□□□□ -0.26
PTPRC-206ENST00000413409 TMEM37Q8WXS4 190 aa13.44□□□□□ -0.26
PTPRC-206ENST00000413409 ZNF503Q96F45 646 aa13.44□□□□□ -0.26
PTPRC-206ENST00000413409 NPIPB5A8MRT5 1133 aa13.43□□□□□ -0.26
PTPRC-206ENST00000413409 I3L2K1 104 aa13.43□□□□□ -0.26
PTPRC-206ENST00000413409 PLP1P60201 277 aa13.43□□□□□ -0.26
PTPRC-206ENST00000413409 FXYD3Q14802 87 aa13.43□□□□□ -0.26
PTPRC-206ENST00000413409 C10orf113Q5VZT2 155 aa13.43□□□□□ -0.26
PTPRC-206ENST00000413409 FAM167A-AS1Q96KT0 104 aa13.43□□□□□ -0.26
PTPRC-206ENST00000413409 DMRT1Q9Y5R6 373 aa13.43□□□□□ -0.26
PTPRC-206ENST00000413409 A0A1W2PRE2 83 aa13.42□□□□□ -0.26
PTPRC-206ENST00000413409 G3V4G9 280 aa13.42□□□□□ -0.26
PTPRC-206ENST00000413409 OR7C2O60412 319 aa13.42□□□□□ -0.26
PTPRC-206ENST00000413409 TMEM11P17152 192 aa13.42□□□□□ -0.26
PTPRC-206ENST00000413409 BRS3P32247 399 aa13.42□□□□□ -0.26
PTPRC-206ENST00000413409 ZNF90Q03938 601 aa13.42□□□□□ -0.26
PTPRC-206ENST00000413409 ELOBQ15370 118 aa13.42□□□□□ -0.26
PTPRC-206ENST00000413409 ZNF562Q6V9R5 426 aa13.42□□□□□ -0.26
PTPRC-206ENST00000413409 OR4X1Q8NH49 305 aa13.42□□□□□ -0.26
PTPRC-206ENST00000413409 ARPC1AQ92747 370 aa13.42□□□□□ -0.26
PTPRC-206ENST00000413409 AJUBAQ96IF1 538 aa13.42□□□□□ -0.26
PTPRC-206ENST00000413409 SLC25A2Q9BXI2 301 aa13.42□□□□□ -0.26
PTPRC-206ENST00000413409 C1RLQ9NZP8 487 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms