RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 STOML3Q8TAV4 291 aa13.9□□□□□ -0.18
SDC1-203ENST00000403076 DUX3Q96PT4 197 aa13.9□□□□□ -0.18
SDC1-203ENST00000403076 CITED1Q99966 193 aa13.9□□□□□ -0.18
SDC1-203ENST00000403076 GINS3Q9BRX5 216 aa13.9□□□□□ -0.18
SDC1-203ENST00000403076 PUS1Q9Y606 427 aaKnown RBP eCLIP13.9□□□□□ -0.18
SDC1-203ENST00000403076 PXMP4Q9Y6I8 212 aa13.9□□□□□ -0.18
SDC1-203ENST00000403076 ZP3P21754 424 aa13.9□□□□□ -0.19
SDC1-203ENST00000403076 FAM106AQ4KMX7 169 aa13.9□□□□□ -0.19
SDC1-203ENST00000403076 STPG3Q8N7X2 389 aa13.9□□□□□ -0.19
SDC1-203ENST00000403076 ST8SIA2Q92186 375 aa13.9□□□□□ -0.19
SDC1-203ENST00000403076 ZNF747Q9BV97 191 aa13.9□□□□□ -0.19
SDC1-203ENST00000403076 PBDC1Q9BVG4 233 aa13.9□□□□□ -0.19
SDC1-203ENST00000403076 SH3BGRL3Q9H299 93 aa13.9□□□□□ -0.19
SDC1-203ENST00000403076 ARV1Q9H2C2 271 aa13.9□□□□□ -0.19
SDC1-203ENST00000403076 SLC25A32Q9H2D1 315 aa13.9□□□□□ -0.19
SDC1-203ENST00000403076 TIMM9Q9Y5J7 89 aa13.9□□□□□ -0.19
SDC1-203ENST00000403076 RFNGQ9Y644 331 aa13.9□□□□□ -0.19
SDC1-203ENST00000403076 ADARB2-AS1A8MUL3 147 aa13.89□□□□□ -0.19
SDC1-203ENST00000403076 CCL24O00175 119 aa13.89□□□□□ -0.19
SDC1-203ENST00000403076 TSPAN15O95858 294 aa13.89□□□□□ -0.19
SDC1-203ENST00000403076 IL4P05112 153 aa13.89□□□□□ -0.19
SDC1-203ENST00000403076 LINC00869P0C866 280 aa13.89□□□□□ -0.19
SDC1-203ENST00000403076 RIPPLY3P57055 190 aa13.89□□□□□ -0.19
SDC1-203ENST00000403076 LYZP61626 148 aa13.89□□□□□ -0.19
SDC1-203ENST00000403076 B2MP61769 119 aa13.89□□□□□ -0.19
SDC1-203ENST00000403076 Q6ZRG5 221 aa13.89□□□□□ -0.19
SDC1-203ENST00000403076 OR2G3Q8NGZ4 309 aa13.89□□□□□ -0.19
SDC1-203ENST00000403076 RAX2Q96IS3 184 aa13.89□□□□□ -0.19
SDC1-203ENST00000403076 PSMG3Q9BT73 122 aaPredicted RBP13.89□□□□□ -0.19
SDC1-203ENST00000403076 ZNF320A2RRD8 509 aa13.88□□□□□ -0.19
SDC1-203ENST00000403076 CFDP00746 253 aaPredicted RBP13.88□□□□□ -0.19
SDC1-203ENST00000403076 HOXD3P31249 432 aaPredicted RBP13.88□□□□□ -0.19
SDC1-203ENST00000403076 FFAR4Q5NUL3 377 aa13.88□□□□□ -0.19
SDC1-203ENST00000403076 TOMM20LQ6UXN7 152 aa13.88□□□□□ -0.19
SDC1-203ENST00000403076 C20orf24Q9BUV8 137 aa13.88□□□□□ -0.19
SDC1-203ENST00000403076 SLC39A9Q9NUM3 307 aa13.88□□□□□ -0.19
SDC1-203ENST00000403076 DOK5Q9P104 306 aa13.88□□□□□ -0.19
SDC1-203ENST00000403076 IGHV3OR16-8A0A075B7F1 116 aa13.87□□□□□ -0.19
SDC1-203ENST00000403076 NDUFA4O00483 81 aa13.87□□□□□ -0.19
SDC1-203ENST00000403076 ORM2P19652 201 aa13.87□□□□□ -0.19
SDC1-203ENST00000403076 SLURP1P55000 103 aa13.87□□□□□ -0.19
SDC1-203ENST00000403076 ELLP55199 621 aaPredicted RBP13.87□□□□□ -0.19
SDC1-203ENST00000403076 PRR20EP86478 221 aa13.87□□□□□ -0.19
SDC1-203ENST00000403076 PRR20CP86479 221 aa13.87□□□□□ -0.19
SDC1-203ENST00000403076 PRR20DP86480 221 aa13.87□□□□□ -0.19
SDC1-203ENST00000403076 PRR20BP86481 221 aa13.87□□□□□ -0.19
SDC1-203ENST00000403076 PRR20AP86496 221 aa13.87□□□□□ -0.19
SDC1-203ENST00000403076 EIF5AL1Q6IS14 154 aaKnown RBP13.87□□□□□ -0.19
SDC1-203ENST00000403076 GPHB5Q86YW7 130 aa13.87□□□□□ -0.19
SDC1-203ENST00000403076 SHISA2Q6UWI4 295 aa13.86□□□□□ -0.19
SDC1-203ENST00000403076 OR1B1Q8NGR6 318 aa13.86□□□□□ -0.19
SDC1-203ENST00000403076 TMED6Q8WW62 240 aa13.86□□□□□ -0.19
SDC1-203ENST00000403076 RNF125Q96EQ8 232 aa13.86□□□□□ -0.19
SDC1-203ENST00000403076 RCC1LQ96I51 464 aaKnown RBP13.86□□□□□ -0.19
SDC1-203ENST00000403076 PF4P02776 101 aa13.85□□□□□ -0.19
SDC1-203ENST00000403076 OR5G3P0C626 314 aa13.85□□□□□ -0.19
SDC1-203ENST00000403076 SEC11BP0C7V7 166 aa13.85□□□□□ -0.19
SDC1-203ENST00000403076 SPP1P10451 314 aa13.85□□□□□ -0.19
SDC1-203ENST00000403076 MYCNOSP40205 109 aa13.85□□□□□ -0.19
SDC1-203ENST00000403076 SYNJ2BPP57105 145 aa13.85□□□□□ -0.19
SDC1-203ENST00000403076 SERF2P84101 59 aa13.85□□□□□ -0.19
SDC1-203ENST00000403076 WI2-2373I1.2A0A1W2PRP0 233 aa13.85□□□□□ -0.19
SDC1-203ENST00000403076 COX7A2P2O60397 106 aa13.85□□□□□ -0.19
SDC1-203ENST00000403076 HYPMO75409 117 aa13.85□□□□□ -0.19
SDC1-203ENST00000403076 ACOT6Q3I5F7 207 aaPredicted RBP13.85□□□□□ -0.19
SDC1-203ENST00000403076 AKR1C8PQ5T2L2 129 aa13.85□□□□□ -0.19
SDC1-203ENST00000403076 PXDC1Q5TGL8 231 aa13.85□□□□□ -0.19
SDC1-203ENST00000403076 OR4F17Q8NGA8 305 aa13.85□□□□□ -0.19
SDC1-203ENST00000403076 OR1L4Q8NGR5 311 aa13.85□□□□□ -0.19
SDC1-203ENST00000403076 OR4F4Q96R69 305 aa13.85□□□□□ -0.19
SDC1-203ENST00000403076 ZNF207O43670 478 aaKnown RBP13.84□□□□□ -0.19
SDC1-203ENST00000403076 KLF5Q13887 457 aaPredicted RBP13.84□□□□□ -0.19
SDC1-203ENST00000403076 UNQ9165/PRO28630Q6UXU0 137 aa13.84□□□□□ -0.19
SDC1-203ENST00000403076 C1QL4Q86Z23 238 aa13.84□□□□□ -0.19
SDC1-203ENST00000403076 TMEM190Q8WZ59 177 aa13.84□□□□□ -0.19
SDC1-203ENST00000403076 ZNF414Q96IQ9 312 aa13.84□□□□□ -0.19
SDC1-203ENST00000403076 ZFAND3Q9H8U3 227 aa13.84□□□□□ -0.19
SDC1-203ENST00000403076 MBP02144 154 aa13.83□□□□□ -0.2
SDC1-203ENST00000403076 FHL3Q13643 280 aa13.83□□□□□ -0.2
SDC1-203ENST00000403076 USF2Q15853 346 aaPredicted RBP13.83□□□□□ -0.2
SDC1-203ENST00000403076 GCSAMLQ5JQS6 135 aa13.83□□□□□ -0.2
SDC1-203ENST00000403076 C10orf113Q5VZT2 155 aa13.83□□□□□ -0.2
SDC1-203ENST00000403076 DLX4Q92988 240 aaPredicted RBP13.83□□□□□ -0.2
SDC1-203ENST00000403076 PHYHIPLQ96FC7 376 aa13.83□□□□□ -0.2
SDC1-203ENST00000403076 METTL26Q96S19 204 aa13.83□□□□□ -0.2
SDC1-203ENST00000403076 PFDN5Q99471 154 aa13.83□□□□□ -0.2
SDC1-203ENST00000403076 MDFIQ99750 246 aa13.83□□□□□ -0.2
SDC1-203ENST00000403076 DNAJC4Q9NNZ3 241 aa13.83□□□□□ -0.2
SDC1-203ENST00000403076 RABAC1Q9UI14 185 aa13.83□□□□□ -0.2
SDC1-203ENST00000403076 HIGD1AQ9Y241 93 aa13.83□□□□□ -0.2
SDC1-203ENST00000403076 UFC1Q9Y3C8 167 aa13.83□□□□□ -0.2
SDC1-203ENST00000403076 FBN1P35555 2871 aaKnown RBP13.83□□□□□ -0.2
SDC1-203ENST00000403076 M6PRP20645 277 aa13.82□□□□□ -0.2
SDC1-203ENST00000403076 NPPCP23582 126 aa13.82□□□□□ -0.2
SDC1-203ENST00000403076 PLP1P60201 277 aa13.82□□□□□ -0.2
SDC1-203ENST00000403076 RAB2AP61019 212 aa13.82□□□□□ -0.2
SDC1-203ENST00000403076 ALKAL2Q6UX46 152 aa13.82□□□□□ -0.2
SDC1-203ENST00000403076 S100A7AQ86SG5 101 aa13.82□□□□□ -0.2
SDC1-203ENST00000403076 OR10G4Q8NGN3 311 aa13.82□□□□□ -0.2
SDC1-203ENST00000403076 OR10G9Q8NGN4 311 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms