RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 MLNRO43193 412 aa5.94□□□□□ -1.46
UPF2-203ENST00000397053 SELLP14151 372 aa5.94□□□□□ -1.46
UPF2-203ENST00000397053 CCL20P78556 96 aa5.94□□□□□ -1.46
UPF2-203ENST00000397053 TMEM249Q2WGJ8 235 aa5.94□□□□□ -1.46
UPF2-203ENST00000397053 KLF17Q5JT82 389 aaPredicted RBP5.94□□□□□ -1.46
UPF2-203ENST00000397053 ATP5L2Q7Z4Y8 100 aa5.94□□□□□ -1.46
UPF2-203ENST00000397053 NKAPP1Q8N9T2 125 aa5.94□□□□□ -1.46
UPF2-203ENST00000397053 MRAPQ8TCY5 172 aa5.94□□□□□ -1.46
UPF2-203ENST00000397053 ZNF48Q96MX3 618 aaPredicted RBP5.94□□□□□ -1.46
UPF2-203ENST00000397053 PLSCR4Q9NRQ2 329 aa5.94□□□□□ -1.46
UPF2-203ENST00000397053 MBNL3Q9NUK0 354 aaKnown RBP5.94□□□□□ -1.46
UPF2-203ENST00000397053 SRRM5B3KS81 715 aa5.94□□□□□ -1.46
UPF2-203ENST00000397053 LY6HO94772 140 aa5.94□□□□□ -1.46
UPF2-203ENST00000397053 HIST1H4AP62805 103 aaKnown RBP5.94□□□□□ -1.46
UPF2-203ENST00000397053 CTAG1AP78358 180 aa5.94□□□□□ -1.46
UPF2-203ENST00000397053 VWCEQ96DN2 955 aa5.94□□□□□ -1.46
UPF2-203ENST00000397053 TRBV7-1A0A0A6YYK4 115 aa5.94□□□□□ -1.46
UPF2-203ENST00000397053 TMEM178BH3BS89 294 aa5.94□□□□□ -1.46
UPF2-203ENST00000397053 CA1P00915 261 aaPredicted RBP5.94□□□□□ -1.46
UPF2-203ENST00000397053 DDTP30046 118 aa5.94□□□□□ -1.46
UPF2-203ENST00000397053 ZNF138P52744 262 aa5.94□□□□□ -1.46
UPF2-203ENST00000397053 SSBP4Q9BWG4 385 aaPredicted RBP5.94□□□□□ -1.46
UPF2-203ENST00000397053 RBM38Q9H0Z9 239 aaKnown RBP5.94□□□□□ -1.46
UPF2-203ENST00000397053 XCL2Q9UBD3 114 aa5.94□□□□□ -1.46
UPF2-203ENST00000397053 ERG28Q9UKR5 140 aa5.94□□□□□ -1.46
UPF2-203ENST00000397053 IGHV1-3A0A0C4DH29 117 aa5.93□□□□□ -1.46
UPF2-203ENST00000397053 ESDP10768 282 aa5.93□□□□□ -1.46
UPF2-203ENST00000397053 NPC2P61916 151 aa5.93□□□□□ -1.46
UPF2-203ENST00000397053 PRIMA1Q86XR5 153 aa5.93□□□□□ -1.46
UPF2-203ENST00000397053 C5orf30Q96GV9 206 aa5.93□□□□□ -1.46
UPF2-203ENST00000397053 RNF5Q99942 180 aa5.93□□□□□ -1.46
UPF2-203ENST00000397053 RNASE7Q9H1E1 156 aaKnown RBP5.93□□□□□ -1.46
UPF2-203ENST00000397053 A0A1B0GWJ7 208 aa5.93□□□□□ -1.46
UPF2-203ENST00000397053 M0R1W7 72 aa5.93□□□□□ -1.46
UPF2-203ENST00000397053 LGALS1P09382 135 aaKnown RBP5.93□□□□□ -1.46
UPF2-203ENST00000397053 DUTP33316 252 aaKnown RBP5.93□□□□□ -1.46
UPF2-203ENST00000397053 H2BFSP57053 126 aa5.93□□□□□ -1.46
UPF2-203ENST00000397053 EIF4EBP2Q13542 120 aaPredicted RBP5.93□□□□□ -1.46
UPF2-203ENST00000397053 DEFB104AQ8WTQ1 72 aa5.93□□□□□ -1.46
UPF2-203ENST00000397053 ZNF625Q96I27 306 aaPredicted RBP5.93□□□□□ -1.46
UPF2-203ENST00000397053 SNHG12Q9BXW3 62 aa5.93□□□□□ -1.46
UPF2-203ENST00000397053 RGPD2P0DJD1 1756 aa5.93□□□□□ -1.46
UPF2-203ENST00000397053 NTN3O00634 580 aaPredicted RBP5.93□□□□□ -1.46
UPF2-203ENST00000397053 PRB4P10163 310 aaPredicted RBP5.93□□□□□ -1.46
UPF2-203ENST00000397053 SSBP2P81877 361 aaPredicted RBP5.93□□□□□ -1.46
UPF2-203ENST00000397053 FAM90A2PQ658T7 463 aa5.93□□□□□ -1.46
UPF2-203ENST00000397053 CD200R1LQ6Q8B3 271 aa5.93□□□□□ -1.46
UPF2-203ENST00000397053 OR10W1Q8NGF6 305 aa5.93□□□□□ -1.46
UPF2-203ENST00000397053 LINC00477Q96M19 166 aa5.93□□□□□ -1.46
UPF2-203ENST00000397053 IGKV2-40A0A087WW87 121 aaPredicted RBP5.93□□□□□ -1.46
UPF2-203ENST00000397053 A0A0G2JNJ9 132 aa5.93□□□□□ -1.46
UPF2-203ENST00000397053 MPTX1A8MV57 137 aa5.93□□□□□ -1.46
UPF2-203ENST00000397053 IGKV2D-40P01614 121 aaPredicted RBP5.93□□□□□ -1.46
UPF2-203ENST00000397053 LINC00271P0C7V0 271 aa5.93□□□□□ -1.46
UPF2-203ENST00000397053 SAA4P35542 130 aa5.93□□□□□ -1.46
UPF2-203ENST00000397053 APOC4P55056 127 aa5.93□□□□□ -1.46
UPF2-203ENST00000397053 ORAOV1Q8WV07 137 aa5.93□□□□□ -1.46
UPF2-203ENST00000397053 PLEKHB2Q96CS7 222 aa5.93□□□□□ -1.46
UPF2-203ENST00000397053 DAZ1Q9NQZ3 744 aaKnown RBP5.93□□□□□ -1.46
UPF2-203ENST00000397053 Q9UFV3 132 aa5.93□□□□□ -1.46
UPF2-203ENST00000397053 PGPEP1LA6NFU8 196 aa5.93□□□□□ -1.46
UPF2-203ENST00000397053 ZNF474Q6S9Z5 364 aaPredicted RBP5.93□□□□□ -1.46
UPF2-203ENST00000397053 ZNF562Q6V9R5 426 aa5.93□□□□□ -1.46
UPF2-203ENST00000397053 IFI27L1Q96BM0 104 aa5.93□□□□□ -1.46
UPF2-203ENST00000397053 RFNGQ9Y644 331 aa5.93□□□□□ -1.46
UPF2-203ENST00000397053 NAV3Q8IVL0 2385 aa5.92□□□□□ -1.46
UPF2-203ENST00000397053 VCYO14598 125 aa5.92□□□□□ -1.46
UPF2-203ENST00000397053 MST1LQ2TV78 715 aa5.92□□□□□ -1.46
UPF2-203ENST00000397053 ANXA2RQ3ZCQ2 193 aa5.92□□□□□ -1.46
UPF2-203ENST00000397053 TMEM200BQ69YZ2 307 aa5.92□□□□□ -1.46
UPF2-203ENST00000397053 KLF12Q9Y4X4 402 aa5.92□□□□□ -1.46
UPF2-203ENST00000397053 LSM4Q9Y4Z0 139 aaKnown RBP5.92□□□□□ -1.46
UPF2-203ENST00000397053 RGPD1P0DJD0 1748 aa5.92□□□□□ -1.46
UPF2-203ENST00000397053 ZGRF1Q86YA3 2104 aa5.92□□□□□ -1.46
UPF2-203ENST00000397053 TAF1P21675 1872 aa5.92□□□□□ -1.46
UPF2-203ENST00000397053 PINLYPA6NC86 204 aa5.92□□□□□ -1.46
UPF2-203ENST00000397053 MBD3L4A6NDZ8 208 aaPredicted RBP5.92□□□□□ -1.46
UPF2-203ENST00000397053 MBD3L3A6NE82 208 aaPredicted RBP5.92□□□□□ -1.46
UPF2-203ENST00000397053 MBD3L5A6NJ08 208 aaPredicted RBP5.92□□□□□ -1.46
UPF2-203ENST00000397053 WISP3O95389 354 aaPredicted RBP5.92□□□□□ -1.46
UPF2-203ENST00000397053 ZNF497Q6ZNH5 498 aa5.92□□□□□ -1.46
UPF2-203ENST00000397053 MBD3L2Q8NHZ7 208 aaPredicted RBP5.92□□□□□ -1.46
UPF2-203ENST00000397053 H3BUT2 72 aa5.92□□□□□ -1.46
UPF2-203ENST00000397053 TGFBR3LH3BV60 316 aa5.92□□□□□ -1.46
UPF2-203ENST00000397053 KLF5Q13887 457 aaPredicted RBP5.92□□□□□ -1.46
UPF2-203ENST00000397053 Q6ZS92 163 aa5.92□□□□□ -1.46
UPF2-203ENST00000397053 NIT1Q86X76 327 aa5.92□□□□□ -1.46
UPF2-203ENST00000397053 ZNF114Q8NC26 417 aa5.92□□□□□ -1.46
UPF2-203ENST00000397053 DNAJC30Q96LL9 226 aa5.92□□□□□ -1.46
UPF2-203ENST00000397053 TRAV9-1A0A075B6T8 112 aa5.92□□□□□ -1.46
UPF2-203ENST00000397053 A0A1B0GTI1 187 aa5.92□□□□□ -1.46
UPF2-203ENST00000397053 GTF3AQ92664 365 aaKnown RBP5.92□□□□□ -1.46
UPF2-203ENST00000397053 ABCA2Q9BZC7 2435 aa5.92□□□□□ -1.46
UPF2-203ENST00000397053 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.91□□□□□ -1.46
UPF2-203ENST00000397053 IGKV1D-13A0A0B4J2D9 117 aa5.91□□□□□ -1.46
UPF2-203ENST00000397053 AMBPP02760 352 aa5.91□□□□□ -1.46
UPF2-203ENST00000397053 IGKV1-13P0DP09 117 aa5.91□□□□□ -1.46
UPF2-203ENST00000397053 KIAA2026Q5HYC2 2103 aa5.91□□□□□ -1.46
UPF2-203ENST00000397053 A8MWV9 139 aa5.91□□□□□ -1.46
UPF2-203ENST00000397053 UBE2BP63146 152 aa5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms