RNA–Protein interactions for RNA: ENST00000395682.3

SHMT1-204, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-204ENST00000395682 SSSCA1O60232 199 aa17.54■□□□□ 0.4
SHMT1-204ENST00000395682 ZBTB8BQ8NAP8 495 aaPredicted RBP17.54■□□□□ 0.4
SHMT1-204ENST00000395682 MUC7Q8TAX7 377 aa17.54■□□□□ 0.4
SHMT1-204ENST00000395682 ZNF431Q8TF32 576 aaPredicted RBP17.54■□□□□ 0.4
SHMT1-204ENST00000395682 BATF3Q9NR55 127 aa17.54■□□□□ 0.4
SHMT1-204ENST00000395682 PSENENQ9NZ42 101 aa17.54■□□□□ 0.4
SHMT1-204ENST00000395682 RABAC1Q9UI14 185 aa17.54■□□□□ 0.4
SHMT1-204ENST00000395682 TRAV2A0A0B4J234 112 aa17.53■□□□□ 0.4
SHMT1-204ENST00000395682 PRSS46E5RG02 174 aa17.53■□□□□ 0.4
SHMT1-204ENST00000395682 UPK1BO75841 260 aa17.53■□□□□ 0.4
SHMT1-204ENST00000395682 SCGB1D2O95969 90 aa17.53■□□□□ 0.4
SHMT1-204ENST00000395682 FABP1P07148 127 aa17.53■□□□□ 0.4
SHMT1-204ENST00000395682 RPL35AP18077 110 aaKnown RBP17.53■□□□□ 0.4
SHMT1-204ENST00000395682 ZNF124Q15973 351 aa17.53■□□□□ 0.4
SHMT1-204ENST00000395682 C16orf54Q6UWD8 224 aa17.53■□□□□ 0.4
SHMT1-204ENST00000395682 STXBP6Q8NFX7 210 aa17.53■□□□□ 0.4
SHMT1-204ENST00000395682 RNF125Q96EQ8 232 aa17.53■□□□□ 0.4
SHMT1-204ENST00000395682 SMIM8Q96KF7 97 aa17.53■□□□□ 0.4
SHMT1-204ENST00000395682 MAP6D1Q9H9H5 199 aa17.53■□□□□ 0.4
SHMT1-204ENST00000395682 EDA2RQ9HAV5 297 aa17.53■□□□□ 0.4
SHMT1-204ENST00000395682 C3orf84H3BNL1 204 aa17.52■□□□□ 0.4
SHMT1-204ENST00000395682 APOC4P55056 127 aa17.52■□□□□ 0.4
SHMT1-204ENST00000395682 TRGV9Q99603 122 aa17.52■□□□□ 0.4
SHMT1-204ENST00000395682 PBDC1Q9BVG4 233 aa17.52■□□□□ 0.4
SHMT1-204ENST00000395682 HELTA6NFD8 242 aa17.51■□□□□ 0.39
SHMT1-204ENST00000395682 CCSO14618 274 aa17.51■□□□□ 0.39
SHMT1-204ENST00000395682 EIF2B2P49770 351 aaKnown RBP17.51■□□□□ 0.39
SHMT1-204ENST00000395682 PAX9P55771 341 aa17.51■□□□□ 0.39
SHMT1-204ENST00000395682 OR2F1Q13607 317 aa17.51■□□□□ 0.39
SHMT1-204ENST00000395682 C12orf45Q8N5I9 185 aaPredicted RBP17.51■□□□□ 0.39
SHMT1-204ENST00000395682 THAP8Q8NA92 274 aa17.51■□□□□ 0.39
SHMT1-204ENST00000395682 GLMPQ8WWB7 406 aa17.51■□□□□ 0.39
SHMT1-204ENST00000395682 IGKV1OR2-108A0A075B7D4 117 aa17.5■□□□□ 0.39
SHMT1-204ENST00000395682 SNRPGP15A8MWD9 76 aa17.5■□□□□ 0.39
SHMT1-204ENST00000395682 FAM25EA8MYX2 175 aa17.5■□□□□ 0.39
SHMT1-204ENST00000395682 BUB3O43684 328 aa17.5■□□□□ 0.39
SHMT1-204ENST00000395682 AP2S1P53680 142 aaPredicted RBP17.5■□□□□ 0.39
SHMT1-204ENST00000395682 FAM24BQ8N5W8 94 aa17.5■□□□□ 0.39
SHMT1-204ENST00000395682 RAB40CQ96S21 281 aa17.5■□□□□ 0.39
SHMT1-204ENST00000395682 KIR2DL5BA0A0G2JN68 375 aa17.49■□□□□ 0.39
SHMT1-204ENST00000395682 KIR2DL5BA0A0G2JPC4 375 aa17.49■□□□□ 0.39
SHMT1-204ENST00000395682 K7EQG2 157 aa17.49■□□□□ 0.39
SHMT1-204ENST00000395682 DEFB131AP59861 70 aa17.49■□□□□ 0.39
SHMT1-204ENST00000395682 IFITM3Q01628 133 aa17.49■□□□□ 0.39
SHMT1-204ENST00000395682 KIR2DL5AQ8N109 375 aa17.49■□□□□ 0.39
SHMT1-204ENST00000395682 STPG3Q8N7X2 389 aa17.49■□□□□ 0.39
SHMT1-204ENST00000395682 KIR2DL5BQ8NHK3 375 aa17.49■□□□□ 0.39
SHMT1-204ENST00000395682 OVOL2Q9BRP0 275 aa17.49■□□□□ 0.39
SHMT1-204ENST00000395682 C5orf51A6NDU8 294 aa17.48■□□□□ 0.39
SHMT1-204ENST00000395682 UBE2CO00762 179 aa17.48■□□□□ 0.39
SHMT1-204ENST00000395682 MBPP02686 304 aaPredicted RBP17.48■□□□□ 0.39
SHMT1-204ENST00000395682 LYL1P12980 280 aa17.48■□□□□ 0.39
SHMT1-204ENST00000395682 LYZP61626 148 aa17.48■□□□□ 0.39
SHMT1-204ENST00000395682 OR8G2PQ6IF36 304 aa17.48■□□□□ 0.39
SHMT1-204ENST00000395682 ACOT7LQ6ZUV0 252 aa17.48■□□□□ 0.39
SHMT1-204ENST00000395682 ENKURQ8TC29 256 aa17.48■□□□□ 0.39
SHMT1-204ENST00000395682 PFDN2Q9UHV9 154 aa17.48■□□□□ 0.39
SHMT1-204ENST00000395682 TAS2R30P59541 319 aa17.47■□□□□ 0.39
SHMT1-204ENST00000395682 AKR1C1Q04828 323 aa17.47■□□□□ 0.39
SHMT1-204ENST00000395682 LEMD1Q68G75 181 aa17.47■□□□□ 0.39
SHMT1-204ENST00000395682 Q6ZWC4 215 aa17.47■□□□□ 0.39
SHMT1-204ENST00000395682 DCANP1Q8TF63 244 aa17.47■□□□□ 0.39
SHMT1-204ENST00000395682 RCL1Q9Y2P8 373 aaKnown RBP17.47■□□□□ 0.39
SHMT1-204ENST00000395682 PMS2P5A8MQ11 134 aa17.46■□□□□ 0.39
SHMT1-204ENST00000395682 IL5P05113 134 aa17.46■□□□□ 0.39
SHMT1-204ENST00000395682 METTL15P1P0C7V9 234 aa17.46■□□□□ 0.39
SHMT1-204ENST00000395682 TMEM14EPQ6UXP3 125 aa17.46■□□□□ 0.39
SHMT1-204ENST00000395682 SIGLEC15Q6ZMC9 328 aa17.46■□□□□ 0.39
SHMT1-204ENST00000395682 DNAH7Q8WXX0 4024 aa17.45■□□□□ 0.38
SHMT1-204ENST00000395682 SMCO3A2RU48 225 aa17.45■□□□□ 0.38
SHMT1-204ENST00000395682 CCNKO75909 580 aa17.45■□□□□ 0.38
SHMT1-204ENST00000395682 NUP62P37198 522 aaPredicted RBP17.45■□□□□ 0.38
SHMT1-204ENST00000395682 DEFB135Q30KP9 77 aa17.45■□□□□ 0.38
SHMT1-204ENST00000395682 TMEM144Q7Z5S9 345 aa17.45■□□□□ 0.38
SHMT1-204ENST00000395682 C2orf50Q96LR7 162 aa17.45■□□□□ 0.38
SHMT1-204ENST00000395682 CSTL1Q9H114 145 aa17.45■□□□□ 0.38
SHMT1-204ENST00000395682 C7orf66A4D0T2 115 aa17.44■□□□□ 0.38
SHMT1-204ENST00000395682 SPRY2O43597 315 aa17.44■□□□□ 0.38
SHMT1-204ENST00000395682 TSC22D2O75157 780 aa17.44■□□□□ 0.38
SHMT1-204ENST00000395682 CFDP00746 253 aaPredicted RBP17.44■□□□□ 0.38
SHMT1-204ENST00000395682 ZNF688P0C7X2 276 aa17.44■□□□□ 0.38
SHMT1-204ENST00000395682 CASC10Q5T4H9 136 aa17.44■□□□□ 0.38
SHMT1-204ENST00000395682 PPP1R14BQ96C90 147 aa17.44■□□□□ 0.38
SHMT1-204ENST00000395682 L7N2F9 121 aa17.43■□□□□ 0.38
SHMT1-204ENST00000395682 GATA2P23769 480 aaPredicted RBP17.43■□□□□ 0.38
SHMT1-204ENST00000395682 RRAS2P62070 204 aaPredicted RBP17.43■□□□□ 0.38
SHMT1-204ENST00000395682 VAMP2P63027 116 aa17.43■□□□□ 0.38
SHMT1-204ENST00000395682 GSG1LQ6UXU4 331 aa17.43■□□□□ 0.38
SHMT1-204ENST00000395682 TMEM182Q6ZP80 229 aaPredicted RBP17.43■□□□□ 0.38
SHMT1-204ENST00000395682 NRARPQ7Z6K4 114 aa17.43■□□□□ 0.38
SHMT1-204ENST00000395682 OR10P1Q8NGE3 313 aa17.43■□□□□ 0.38
SHMT1-204ENST00000395682 TP53TG1Q9Y2A0 90 aa17.43■□□□□ 0.38
SHMT1-204ENST00000395682 LSM5Q9Y4Y9 91 aaKnown RBP17.43■□□□□ 0.38
SHMT1-204ENST00000395682 DLK1P80370 383 aa17.42■□□□□ 0.38
SHMT1-204ENST00000395682 BPIFCQ8NFQ6 507 aa17.42■□□□□ 0.38
SHMT1-204ENST00000395682 RNF183Q96D59 192 aa17.42■□□□□ 0.38
SHMT1-204ENST00000395682 GPN1Q9HCN4 374 aaPredicted RBP17.42■□□□□ 0.38
SHMT1-204ENST00000395682 NRN1Q9NPD7 142 aa17.42■□□□□ 0.38
SHMT1-204ENST00000395682 K7EPK0 472 aa17.41■□□□□ 0.38
SHMT1-204ENST00000395682 C1orf194Q5T5A4 169 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms