RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 CDC42EP3Q9UKI2 254 aa17.15■□□□□ 0.34
TRIM54-202ENST00000380075 TRAPPC1Q9Y5R8 145 aa17.15■□□□□ 0.34
TRIM54-202ENST00000380075 PDZD2O15018 2839 aa17.15■□□□□ 0.34
TRIM54-202ENST00000380075 NOTCH2Q04721 2471 aa17.15■□□□□ 0.34
TRIM54-202ENST00000380075 OVOL3O00110 214 aa17.15■□□□□ 0.34
TRIM54-202ENST00000380075 GCGP01275 180 aa17.15■□□□□ 0.34
TRIM54-202ENST00000380075 FABP1P07148 127 aa17.15■□□□□ 0.34
TRIM54-202ENST00000380075 GPR6P46095 362 aaPredicted RBP17.15■□□□□ 0.34
TRIM54-202ENST00000380075 YPEL3P61236 119 aaPredicted RBP17.15■□□□□ 0.34
TRIM54-202ENST00000380075 PYY3Q5JQD4 70 aa17.15■□□□□ 0.34
TRIM54-202ENST00000380075 OR1L6Q8NGR2 347 aa17.15■□□□□ 0.34
TRIM54-202ENST00000380075 VPS13CQ709C8 3753 aa17.14■□□□□ 0.33
TRIM54-202ENST00000380075 NPBQ8NG41 125 aa17.14■□□□□ 0.33
TRIM54-202ENST00000380075 CFHR4Q92496 578 aa17.14■□□□□ 0.33
TRIM54-202ENST00000380075 FXYD5Q96DB9 178 aa17.14■□□□□ 0.33
TRIM54-202ENST00000380075 IGF2BP2-AS1Q96M15 143 aa17.14■□□□□ 0.33
TRIM54-202ENST00000380075 GSN-AS1Q9NRJ2 163 aa17.14■□□□□ 0.33
TRIM54-202ENST00000380075 NAV2Q8IVL1 2488 aa17.13■□□□□ 0.33
TRIM54-202ENST00000380075 OOSP1A8MZH6 123 aa17.13■□□□□ 0.33
TRIM54-202ENST00000380075 ISLRO14498 428 aa17.13■□□□□ 0.33
TRIM54-202ENST00000380075 NBR2O15453 112 aa17.13■□□□□ 0.33
TRIM54-202ENST00000380075 HYPMO75409 117 aa17.13■□□□□ 0.33
TRIM54-202ENST00000380075 FABP4P15090 132 aa17.13■□□□□ 0.33
TRIM54-202ENST00000380075 MMDQ15546 238 aa17.13■□□□□ 0.33
TRIM54-202ENST00000380075 RPEL1Q2QD12 228 aa17.13■□□□□ 0.33
TRIM54-202ENST00000380075 PDZD11Q5EBL8 140 aa17.13■□□□□ 0.33
TRIM54-202ENST00000380075 LDLRAD2Q5SZI1 272 aa17.13■□□□□ 0.33
TRIM54-202ENST00000380075 HIST1H2BLQ99880 126 aa17.13■□□□□ 0.33
TRIM54-202ENST00000380075 V9GYV3 84 aa17.13■□□□□ 0.33
TRIM54-202ENST00000380075 NDUFA3O95167 84 aa17.13■□□□□ 0.33
TRIM54-202ENST00000380075 MOSP00540 346 aa17.13■□□□□ 0.33
TRIM54-202ENST00000380075 PYYP10082 97 aa17.13■□□□□ 0.33
TRIM54-202ENST00000380075 CNN1P51911 297 aaKnown RBP17.13■□□□□ 0.33
TRIM54-202ENST00000380075 CCDC144NLQ6NUI1 221 aa17.13■□□□□ 0.33
TRIM54-202ENST00000380075 PACRGQ96M98 296 aaPredicted RBP17.13■□□□□ 0.33
TRIM54-202ENST00000380075 ORM2P19652 201 aa17.12■□□□□ 0.33
TRIM54-202ENST00000380075 OR1B1Q8NGR6 318 aa17.12■□□□□ 0.33
TRIM54-202ENST00000380075 CYSRT1A8MQ03 144 aa17.11■□□□□ 0.33
TRIM54-202ENST00000380075 NDUFS7O75251 213 aa17.11■□□□□ 0.33
TRIM54-202ENST00000380075 CNIH1O95406 144 aa17.11■□□□□ 0.33
TRIM54-202ENST00000380075 LGALS4P56470 323 aa17.11■□□□□ 0.33
TRIM54-202ENST00000380075 ZNF329Q86UD4 541 aa17.11■□□□□ 0.33
TRIM54-202ENST00000380075 I3L2K1 104 aa17.11■□□□□ 0.33
TRIM54-202ENST00000380075 FCN1O00602 326 aa17.11■□□□□ 0.33
TRIM54-202ENST00000380075 TRBV9A0A0B4J1U6 114 aa17.1■□□□□ 0.33
TRIM54-202ENST00000380075 SLC17A3O00476 420 aa17.1■□□□□ 0.33
TRIM54-202ENST00000380075 IGLV2-8P01709 118 aa17.1■□□□□ 0.33
TRIM54-202ENST00000380075 OR5I1Q13606 314 aa17.1■□□□□ 0.33
TRIM54-202ENST00000380075 PEX7O00628 323 aa17.09■□□□□ 0.33
TRIM54-202ENST00000380075 IGLC1P0CG04 106 aa17.09■□□□□ 0.33
TRIM54-202ENST00000380075 APELAP0DMC3 54 aa17.09■□□□□ 0.33
TRIM54-202ENST00000380075 MYCNOSP40205 109 aa17.09■□□□□ 0.33
TRIM54-202ENST00000380075 DEFB113Q30KQ7 82 aa17.09■□□□□ 0.33
TRIM54-202ENST00000380075 COX19Q49B96 90 aa17.09■□□□□ 0.33
TRIM54-202ENST00000380075 MINOS1Q5TGZ0 78 aa17.09■□□□□ 0.33
TRIM54-202ENST00000380075 RUSC1-AS1Q66K80 236 aa17.09■□□□□ 0.33
TRIM54-202ENST00000380075 TMEM190Q8WZ59 177 aa17.09■□□□□ 0.33
TRIM54-202ENST00000380075 WNT10AQ9GZT5 417 aa17.09■□□□□ 0.33
TRIM54-202ENST00000380075 HILPDAQ9Y5L2 63 aa17.09■□□□□ 0.33
TRIM54-202ENST00000380075 DMRT1Q9Y5R6 373 aa17.09■□□□□ 0.33
TRIM54-202ENST00000380075 MINOS1-NBL1R4GNA1 71 aa17.09■□□□□ 0.33
TRIM54-202ENST00000380075 ANKRD17O75179 2603 aaKnown RBP17.09■□□□□ 0.33
TRIM54-202ENST00000380075 AKAP9Q99996 3911 aa17.08■□□□□ 0.33
TRIM54-202ENST00000380075 KLRD1Q13241 179 aa17.08■□□□□ 0.33
TRIM54-202ENST00000380075 C19orf35Q6ZS72 473 aa17.08■□□□□ 0.33
TRIM54-202ENST00000380075 SMIM12Q96EX1 92 aa17.08■□□□□ 0.33
TRIM54-202ENST00000380075 NAV3Q8IVL0 2385 aa17.08■□□□□ 0.32
TRIM54-202ENST00000380075 AMBPP02760 352 aa17.08■□□□□ 0.32
TRIM54-202ENST00000380075 MBD6Q96DN6 1003 aa17.08■□□□□ 0.32
TRIM54-202ENST00000380075 BEX4Q9NWD9 120 aaPredicted RBP17.08■□□□□ 0.32
TRIM54-202ENST00000380075 HIGD1AQ9Y241 93 aa17.08■□□□□ 0.32
TRIM54-202ENST00000380075 IBA57Q5T440 356 aaKnown RBP17.07■□□□□ 0.32
TRIM54-202ENST00000380075 IGHV4-39P01824 125 aa17.06■□□□□ 0.32
TRIM54-202ENST00000380075 NBEAP1P0C6P0 100 aa17.06■□□□□ 0.32
TRIM54-202ENST00000380075 PAX1P15863 534 aa17.06■□□□□ 0.32
TRIM54-202ENST00000380075 HIST1H1BP16401 226 aaKnown RBP17.06■□□□□ 0.32
TRIM54-202ENST00000380075 ATP5J2P56134 94 aa17.06■□□□□ 0.32
TRIM54-202ENST00000380075 FXYD3Q14802 87 aa17.06■□□□□ 0.32
TRIM54-202ENST00000380075 C5orf64Q2M2E5 130 aa17.06■□□□□ 0.32
TRIM54-202ENST00000380075 FAM231DQ6ZW35 169 aa17.06■□□□□ 0.32
TRIM54-202ENST00000380075 VMO1Q7Z5L0 202 aa17.06■□□□□ 0.32
TRIM54-202ENST00000380075 LHFPL4Q7Z7J7 247 aa17.06■□□□□ 0.32
TRIM54-202ENST00000380075 TMEM18Q96B42 140 aa17.06■□□□□ 0.32
TRIM54-202ENST00000380075 RASL11BQ9BPW5 248 aa17.06■□□□□ 0.32
TRIM54-202ENST00000380075 MGST1P10620 155 aaKnown RBP17.06■□□□□ 0.32
TRIM54-202ENST00000380075 GP9P14770 177 aa17.06■□□□□ 0.32
TRIM54-202ENST00000380075 EFNA4P52798 201 aa17.06■□□□□ 0.32
TRIM54-202ENST00000380075 CX3CL1P78423 397 aa17.06■□□□□ 0.32
TRIM54-202ENST00000380075 EPDR1Q9UM22 224 aa17.06■□□□□ 0.32
TRIM54-202ENST00000380075 IGHV3-21A0A0B4J1V1 117 aa17.05■□□□□ 0.32
TRIM54-202ENST00000380075 MT-ND6P03923 174 aa17.05■□□□□ 0.32
TRIM54-202ENST00000380075 TMEM183BQ1AE95 376 aa17.05■□□□□ 0.32
TRIM54-202ENST00000380075 WDR73Q6P4I2 378 aa17.05■□□□□ 0.32
TRIM54-202ENST00000380075 GNB1LQ9BYB4 327 aa17.05■□□□□ 0.32
TRIM54-202ENST00000380075 RNASE7Q9H1E1 156 aaKnown RBP17.05■□□□□ 0.32
TRIM54-202ENST00000380075 TMEM14CQ9P0S9 112 aa17.05■□□□□ 0.32
TRIM54-202ENST00000380075 PSG1P11464 419 aa17.04■□□□□ 0.32
TRIM54-202ENST00000380075 HES1Q14469 280 aa17.04■□□□□ 0.32
TRIM54-202ENST00000380075 BAGE2Q86Y30 109 aa17.04■□□□□ 0.32
TRIM54-202ENST00000380075 OR5R1Q8NH85 324 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms