RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 REG1BP48304 166 aa17.02■□□□□ 0.32
UPF3A-202ENST00000375299 TNFAIP6P98066 277 aaPredicted RBP17.02■□□□□ 0.32
UPF3A-202ENST00000375299 FLYWCH2Q96CP2 140 aaKnown RBP17.02■□□□□ 0.32
UPF3A-202ENST00000375299 PERPQ96FX8 193 aa17.02■□□□□ 0.32
UPF3A-202ENST00000375299 CD24P25063 80 aa17.02■□□□□ 0.31
UPF3A-202ENST00000375299 C10orf55Q5SWW7 151 aa17.02■□□□□ 0.31
UPF3A-202ENST00000375299 OR5AN1Q8NGI8 311 aa17.02■□□□□ 0.31
UPF3A-202ENST00000375299 OR4A5Q8NH83 315 aa17.02■□□□□ 0.31
UPF3A-202ENST00000375299 ZNF492Q9P255 531 aa17.02■□□□□ 0.31
UPF3A-202ENST00000375299 LINC00312Q9Y6C7 94 aa17.02■□□□□ 0.31
UPF3A-202ENST00000375299 P01737 135 aa17.01■□□□□ 0.31
UPF3A-202ENST00000375299 PGLYRP4Q96LB8 373 aa17.01■□□□□ 0.31
UPF3A-202ENST00000375299 TMEM191AQ9H0A3 160 aa17.01■□□□□ 0.31
UPF3A-202ENST00000375299 DYSFO75923 2080 aa17.01■□□□□ 0.31
UPF3A-202ENST00000375299 C19orf71A6NCJ1 209 aa17.01■□□□□ 0.31
UPF3A-202ENST00000375299 SLC25A34Q6PIV7 304 aa17.01■□□□□ 0.31
UPF3A-202ENST00000375299 IGFL2Q6UWQ7 119 aa17.01■□□□□ 0.31
UPF3A-202ENST00000375299 VSTM2AQ8TAG5 236 aa17.01■□□□□ 0.31
UPF3A-202ENST00000375299 SSUH2Q9Y2M2 353 aa17.01■□□□□ 0.31
UPF3A-202ENST00000375299 WASHC3Q9Y3C0 194 aa17.01■□□□□ 0.31
UPF3A-202ENST00000375299 TAX1BP3O14907 124 aa17■□□□□ 0.31
UPF3A-202ENST00000375299 IGHV1-46P01743 117 aa17■□□□□ 0.31
UPF3A-202ENST00000375299 RHOGP84095 191 aa17■□□□□ 0.31
UPF3A-202ENST00000375299 BVES-AS1Q5T3Y7 98 aa17■□□□□ 0.31
UPF3A-202ENST00000375299 FMC1Q96HJ9 113 aa17■□□□□ 0.31
UPF3A-202ENST00000375299 ORM2P19652 201 aa17■□□□□ 0.31
UPF3A-202ENST00000375299 TIMM23BQ5SRD1 257 aa17■□□□□ 0.31
UPF3A-202ENST00000375299 ZCCHC24Q8N2G6 241 aaKnown RBP17■□□□□ 0.31
UPF3A-202ENST00000375299 GFRA4Q9GZZ7 299 aa17■□□□□ 0.31
UPF3A-202ENST00000375299 TRAV17A0A0B4J275 112 aa16.99■□□□□ 0.31
UPF3A-202ENST00000375299 NUDT3O95989 172 aa16.99■□□□□ 0.31
UPF3A-202ENST00000375299 LTAP01374 205 aa16.99■□□□□ 0.31
UPF3A-202ENST00000375299 OR1B1Q8NGR6 318 aa16.99■□□□□ 0.31
UPF3A-202ENST00000375299 CADP27708 2225 aa16.99■□□□□ 0.31
UPF3A-202ENST00000375299 HSBP1L1C9JCN9 74 aa16.99■□□□□ 0.31
UPF3A-202ENST00000375299 NBEAP1P0C6P0 100 aa16.99■□□□□ 0.31
UPF3A-202ENST00000375299 WT1P19544 449 aaPredicted RBP16.99■□□□□ 0.31
UPF3A-202ENST00000375299 RBPMS2Q6ZRY4 209 aaKnown RBP16.99■□□□□ 0.31
UPF3A-202ENST00000375299 ARL6IP6Q8N6S5 226 aa16.99■□□□□ 0.31
UPF3A-202ENST00000375299 C5orf17Q8NAS9 161 aa16.99■□□□□ 0.31
UPF3A-202ENST00000375299 OR4C13Q8NGP0 309 aa16.99■□□□□ 0.31
UPF3A-202ENST00000375299 SPENQ96T58 3664 aaKnown RBP16.98■□□□□ 0.31
UPF3A-202ENST00000375299 LIPFP07098 398 aa16.98■□□□□ 0.31
UPF3A-202ENST00000375299 ERASQ7Z444 233 aa16.98■□□□□ 0.31
UPF3A-202ENST00000375299 CFAP47Q6ZTR5 3102 aa16.98■□□□□ 0.31
UPF3A-202ENST00000375299 OR5AL1P0C617 328 aa16.97■□□□□ 0.31
UPF3A-202ENST00000375299 ZNF137PP52743 207 aa16.97■□□□□ 0.31
UPF3A-202ENST00000375299 COTL1Q14019 142 aa16.97■□□□□ 0.31
UPF3A-202ENST00000375299 TEX36Q5VZQ5 186 aa16.97■□□□□ 0.31
UPF3A-202ENST00000375299 SEM1Q6ZVN7 128 aa16.97■□□□□ 0.31
UPF3A-202ENST00000375299 DEFB125Q8N687 156 aa16.97■□□□□ 0.31
UPF3A-202ENST00000375299 NDFIP1Q9BT67 221 aa16.97■□□□□ 0.31
UPF3A-202ENST00000375299 SCRT2Q9NQ03 307 aa16.97■□□□□ 0.31
UPF3A-202ENST00000375299 LOC102724200A0A096LPH7 203 aaPredicted RBP16.97■□□□□ 0.31
UPF3A-202ENST00000375299 C22orf46C9J442 243 aa16.97■□□□□ 0.31
UPF3A-202ENST00000375299 PET117Q6UWS5 81 aa16.97■□□□□ 0.31
UPF3A-202ENST00000375299 DAZAP1Q96EP5 407 aaKnown RBP16.97■□□□□ 0.31
UPF3A-202ENST00000375299 MAP1LC3CQ9BXW4 147 aa16.97■□□□□ 0.31
UPF3A-202ENST00000375299 CHEK1O14757 476 aa16.96■□□□□ 0.31
UPF3A-202ENST00000375299 RPS20P60866 119 aaKnown RBP16.96■□□□□ 0.31
UPF3A-202ENST00000375299 LHFPL4Q7Z7J7 247 aa16.96■□□□□ 0.31
UPF3A-202ENST00000375299 IGLV2-23P01705 113 aa16.96■□□□□ 0.31
UPF3A-202ENST00000375299 TCRAP04437 139 aa16.96■□□□□ 0.31
UPF3A-202ENST00000375299 C12orf54Q6X4T0 127 aa16.96■□□□□ 0.31
UPF3A-202ENST00000375299 NAV3Q8IVL0 2385 aa16.96■□□□□ 0.31
UPF3A-202ENST00000375299 A0A1W2PPI3 338 aa16.95■□□□□ 0.3
UPF3A-202ENST00000375299 MBD3L4A6NDZ8 208 aaPredicted RBP16.95■□□□□ 0.3
UPF3A-202ENST00000375299 MBD3L3A6NE82 208 aaPredicted RBP16.95■□□□□ 0.3
UPF3A-202ENST00000375299 MBD3L5A6NJ08 208 aaPredicted RBP16.95■□□□□ 0.3
UPF3A-202ENST00000375299 CCL3L1P16619 93 aa16.95■□□□□ 0.3
UPF3A-202ENST00000375299 C3orf36Q3SXR2 165 aa16.95■□□□□ 0.3
UPF3A-202ENST00000375299 PIP4P1Q86T03 277 aa16.95■□□□□ 0.3
UPF3A-202ENST00000375299 MBD3L2Q8NHZ7 208 aaPredicted RBP16.95■□□□□ 0.3
UPF3A-202ENST00000375299 MUC21A0A0G2JKD1 596 aa16.95■□□□□ 0.3
UPF3A-202ENST00000375299 MUC21A0A140T8X8 626 aa16.95■□□□□ 0.3
UPF3A-202ENST00000375299 FAM231BA6NCW3 169 aa16.95■□□□□ 0.3
UPF3A-202ENST00000375299 HLA-DRB1P01911 266 aa16.95■□□□□ 0.3
UPF3A-202ENST00000375299 GP9P14770 177 aa16.95■□□□□ 0.3
UPF3A-202ENST00000375299 RNF151Q2KHN1 245 aa16.95■□□□□ 0.3
UPF3A-202ENST00000375299 MUC21Q5SSG8 566 aa16.95■□□□□ 0.3
UPF3A-202ENST00000375299 RUSC1-AS1Q66K80 236 aa16.95■□□□□ 0.3
UPF3A-202ENST00000375299 ETFRF1Q6IPR1 90 aa16.95■□□□□ 0.3
UPF3A-202ENST00000375299 ZNF474Q6S9Z5 364 aaPredicted RBP16.95■□□□□ 0.3
UPF3A-202ENST00000375299 Q9H3A6 140 aa16.95■□□□□ 0.3
UPF3A-202ENST00000375299 GSX1Q9H4S2 264 aaPredicted RBP16.95■□□□□ 0.3
UPF3A-202ENST00000375299 ASPMQ8IZT6 3477 aa16.94■□□□□ 0.3
UPF3A-202ENST00000375299 MEF2CQ06413 473 aaPredicted RBP16.94■□□□□ 0.3
UPF3A-202ENST00000375299 OR10X1Q8NGY0 326 aa16.94■□□□□ 0.3
UPF3A-202ENST00000375299 TRGV9Q99603 122 aa16.94■□□□□ 0.3
UPF3A-202ENST00000375299 OR2T8A6NH00 312 aa16.94■□□□□ 0.3
UPF3A-202ENST00000375299 NPIPB6E9PJ23 425 aa16.94■□□□□ 0.3
UPF3A-202ENST00000375299 CRYGCP07315 174 aa16.94■□□□□ 0.3
UPF3A-202ENST00000375299 DIAPH2-AS1Q14236 149 aa16.94■□□□□ 0.3
UPF3A-202ENST00000375299 MS4A6AQ9H2W1 248 aa16.94■□□□□ 0.3
UPF3A-202ENST00000375299 ARFGEF3Q5TH69 2177 aa16.93■□□□□ 0.3
UPF3A-202ENST00000375299 PPBPP02775 128 aa16.93■□□□□ 0.3
UPF3A-202ENST00000375299 FAM71F2Q6NXP2 309 aa16.93■□□□□ 0.3
UPF3A-202ENST00000375299 HSPB8Q9UJY1 196 aa16.93■□□□□ 0.3
UPF3A-202ENST00000375299 ZNF835Q9Y2P0 537 aa16.93■□□□□ 0.3
UPF3A-202ENST00000375299 ZFHX4Q86UP3 3567 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 239.2 ms