RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 KCNIP2Q9NS61 270 aa11.47□□□□□ -0.57
HMGA1-203ENST00000374116 SLC35D1Q9NTN3 355 aa11.47□□□□□ -0.57
HMGA1-203ENST00000374116 CHTOPQ9Y3Y2 248 aaKnown RBP11.47□□□□□ -0.57
HMGA1-203ENST00000374116 OR51B2Q9Y5P1 312 aa11.47□□□□□ -0.57
HMGA1-203ENST00000374116 CD5LO43866 347 aa11.46□□□□□ -0.57
HMGA1-203ENST00000374116 PDE6DO43924 150 aa11.46□□□□□ -0.57
HMGA1-203ENST00000374116 NPY1RP25929 384 aa11.46□□□□□ -0.57
HMGA1-203ENST00000374116 DLX6P56179 175 aa11.46□□□□□ -0.57
HMGA1-203ENST00000374116 ARF6P62330 175 aa11.46□□□□□ -0.57
HMGA1-203ENST00000374116 ZNF738Q8NE65 137 aa11.46□□□□□ -0.57
HMGA1-203ENST00000374116 NPVFQ9HCQ7 196 aa11.46□□□□□ -0.57
HMGA1-203ENST00000374116 PPIAL4CA0A0B4J2A2 164 aa11.46□□□□□ -0.58
HMGA1-203ENST00000374116 A0A1W2PPV4 95 aa11.46□□□□□ -0.58
HMGA1-203ENST00000374116 UPK2O00526 184 aa11.46□□□□□ -0.58
HMGA1-203ENST00000374116 SERF1AO75920 110 aa11.46□□□□□ -0.58
HMGA1-203ENST00000374116 PPIAL4GP0DN37 164 aa11.46□□□□□ -0.58
HMGA1-203ENST00000374116 CCL3L1P16619 93 aa11.46□□□□□ -0.58
HMGA1-203ENST00000374116 MMDQ15546 238 aa11.46□□□□□ -0.58
HMGA1-203ENST00000374116 ZNF596Q8TC21 504 aa11.46□□□□□ -0.58
HMGA1-203ENST00000374116 VN1R17PQ8TDU5 208 aa11.46□□□□□ -0.58
HMGA1-203ENST00000374116 ZNF586Q9NXT0 402 aa11.46□□□□□ -0.58
HMGA1-203ENST00000374116 ONECUT1Q9UBC0 465 aa11.46□□□□□ -0.58
HMGA1-203ENST00000374116 CDC42EP3Q9UKI2 254 aa11.46□□□□□ -0.58
HMGA1-203ENST00000374116 MTORP42345 2549 aa11.45□□□□□ -0.58
HMGA1-203ENST00000374116 TRBV9A0A0B4J1U6 114 aa11.45□□□□□ -0.58
HMGA1-203ENST00000374116 FNDC10F2Z333 226 aa11.45□□□□□ -0.58
HMGA1-203ENST00000374116 CRISP2P16562 243 aa11.45□□□□□ -0.58
HMGA1-203ENST00000374116 ATP5IP56385 69 aaPredicted RBP11.45□□□□□ -0.58
HMGA1-203ENST00000374116 C8orf31Q8N9H6 132 aa11.45□□□□□ -0.58
HMGA1-203ENST00000374116 OR5B3Q8NH48 314 aa11.45□□□□□ -0.58
HMGA1-203ENST00000374116 OSR1Q8TAX0 266 aaPredicted RBP11.45□□□□□ -0.58
HMGA1-203ENST00000374116 MGST2Q99735 147 aa11.45□□□□□ -0.58
HMGA1-203ENST00000374116 TXNDC17Q9BRA2 123 aa11.45□□□□□ -0.58
HMGA1-203ENST00000374116 GGTLC1Q9BX51 225 aa11.45□□□□□ -0.58
HMGA1-203ENST00000374116 C7orf69Q9H7B7 122 aa11.45□□□□□ -0.58
HMGA1-203ENST00000374116 BET1LQ9NYM9 111 aa11.45□□□□□ -0.58
HMGA1-203ENST00000374116 LSM4Q9Y4Z0 139 aaKnown RBP11.45□□□□□ -0.58
HMGA1-203ENST00000374116 INSIG2Q9Y5U4 225 aa11.45□□□□□ -0.58
HMGA1-203ENST00000374116 IGHV3OR16-10A0A075B7F0 116 aa11.44□□□□□ -0.58
HMGA1-203ENST00000374116 J3QR06 171 aa11.44□□□□□ -0.58
HMGA1-203ENST00000374116 HYPMO75409 117 aa11.44□□□□□ -0.58
HMGA1-203ENST00000374116 APOA2P02652 100 aa11.44□□□□□ -0.58
HMGA1-203ENST00000374116 NPPCP23582 126 aa11.44□□□□□ -0.58
HMGA1-203ENST00000374116 HNRNPA3P51991 378 aaKnown RBP11.44□□□□□ -0.58
HMGA1-203ENST00000374116 SUMO1P63165 101 aaKnown RBP11.44□□□□□ -0.58
HMGA1-203ENST00000374116 PRCDQ00LT1 54 aa11.44□□□□□ -0.58
HMGA1-203ENST00000374116 FAM71F2Q6NXP2 309 aa11.44□□□□□ -0.58
HMGA1-203ENST00000374116 KLHDC1Q8N7A1 406 aa11.44□□□□□ -0.58
HMGA1-203ENST00000374116 HIVEP2P31629 2446 aa11.44□□□□□ -0.58
HMGA1-203ENST00000374116 TRAV30A0A087WSZ9 112 aa11.44□□□□□ -0.58
HMGA1-203ENST00000374116 INAFM1C9JVW0 142 aa11.44□□□□□ -0.58
HMGA1-203ENST00000374116 ENSAO43768 121 aaKnown RBP11.44□□□□□ -0.58
HMGA1-203ENST00000374116 PAGE4O60829 102 aa11.44□□□□□ -0.58
HMGA1-203ENST00000374116 CA2P00918 260 aa11.44□□□□□ -0.58
HMGA1-203ENST00000374116 IGKV1-16P04430 117 aa11.44□□□□□ -0.58
HMGA1-203ENST00000374116 RAB31Q13636 194 aa11.44□□□□□ -0.58
HMGA1-203ENST00000374116 SPATA45Q537H7 98 aa11.44□□□□□ -0.58
HMGA1-203ENST00000374116 TEPPQ6URK8 271 aa11.44□□□□□ -0.58
HMGA1-203ENST00000374116 PNKDQ8N490 385 aa11.44□□□□□ -0.58
HMGA1-203ENST00000374116 LINC00311Q8N616 119 aa11.44□□□□□ -0.58
HMGA1-203ENST00000374116 PLEKHA3Q9HB20 300 aa11.44□□□□□ -0.58
HMGA1-203ENST00000374116 MRPL27Q9P0M9 148 aaKnown RBP11.44□□□□□ -0.58
HMGA1-203ENST00000374116 ZNRD1Q9P1U0 126 aa11.44□□□□□ -0.58
HMGA1-203ENST00000374116 FBXL7Q9UJT9 491 aa11.44□□□□□ -0.58
HMGA1-203ENST00000374116 SRRM4A7MD48 611 aaKnown RBP11.43□□□□□ -0.58
HMGA1-203ENST00000374116 LY6G5BQ8NDX9 201 aa11.43□□□□□ -0.58
HMGA1-203ENST00000374116 SGMS2Q8NHU3 365 aa11.43□□□□□ -0.58
HMGA1-203ENST00000374116 GATAD1Q8WUU5 269 aa11.43□□□□□ -0.58
HMGA1-203ENST00000374116 SFRP2Q96HF1 295 aa11.43□□□□□ -0.58
HMGA1-203ENST00000374116 DIRC3C9JPN6 131 aa11.42□□□□□ -0.58
HMGA1-203ENST00000374116 GPX1P07203 203 aa11.42□□□□□ -0.58
HMGA1-203ENST00000374116 RIPPLY3P57055 190 aa11.42□□□□□ -0.58
HMGA1-203ENST00000374116 RHOGP84095 191 aa11.42□□□□□ -0.58
HMGA1-203ENST00000374116 GCSAMLQ5JQS6 135 aa11.42□□□□□ -0.58
HMGA1-203ENST00000374116 OR5AN1Q8NGI8 311 aa11.42□□□□□ -0.58
HMGA1-203ENST00000374116 OR1L6Q8NGR2 347 aa11.42□□□□□ -0.58
HMGA1-203ENST00000374116 HINT2Q9BX68 163 aa11.42□□□□□ -0.58
HMGA1-203ENST00000374116 MRPL20Q9BYC9 149 aaKnown RBP11.42□□□□□ -0.58
HMGA1-203ENST00000374116 FN1P02751 2386 aaKnown RBP11.42□□□□□ -0.58
HMGA1-203ENST00000374116 IGHV2-26A0A0B4J1V2 119 aa11.42□□□□□ -0.58
HMGA1-203ENST00000374116 TEX50A0A1B0GTY4 177 aa11.42□□□□□ -0.58
HMGA1-203ENST00000374116 MDFIC2A0A1B0GVS7 189 aa11.42□□□□□ -0.58
HMGA1-203ENST00000374116 GRIFINA4D1Z8 144 aa11.42□□□□□ -0.58
HMGA1-203ENST00000374116 C11orf94C9JXX5 98 aa11.42□□□□□ -0.58
HMGA1-203ENST00000374116 H0YJW9 148 aa11.42□□□□□ -0.58
HMGA1-203ENST00000374116 ZNF253O75346 499 aa11.42□□□□□ -0.58
HMGA1-203ENST00000374116 LIPFP07098 398 aa11.42□□□□□ -0.58
HMGA1-203ENST00000374116 SAA1P0DJI8 122 aaPredicted RBP11.42□□□□□ -0.58
HMGA1-203ENST00000374116 ZNF137PP52743 207 aa11.42□□□□□ -0.58
HMGA1-203ENST00000374116 PAX8Q06710 450 aa11.42□□□□□ -0.58
HMGA1-203ENST00000374116 FBLN7Q53RD9 439 aa11.42□□□□□ -0.58
HMGA1-203ENST00000374116 TMEM177Q53S58 311 aa11.42□□□□□ -0.58
HMGA1-203ENST00000374116 FAM120AOSQ5T036 256 aa11.42□□□□□ -0.58
HMGA1-203ENST00000374116 MIC13Q5XKP0 118 aa11.42□□□□□ -0.58
HMGA1-203ENST00000374116 Q6ZN92 141 aa11.42□□□□□ -0.58
HMGA1-203ENST00000374116 SIGLECL1Q8N7X8 197 aa11.42□□□□□ -0.58
HMGA1-203ENST00000374116 SVIPQ8NHG7 77 aa11.42□□□□□ -0.58
HMGA1-203ENST00000374116 ST6GALNAC6Q969X2 333 aa11.42□□□□□ -0.58
HMGA1-203ENST00000374116 SAMD10Q9BYL1 202 aa11.42□□□□□ -0.58
HMGA1-203ENST00000374116 A0A1W2PRD5 423 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms