RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 LINC00271P0C7V0 271 aa6.14□□□□□ -1.43
SYNE1-208ENST00000367256 SLC25A48Q6ZT89 311 aaKnown RBP6.14□□□□□ -1.43
SYNE1-208ENST00000367256 C1orf162Q8NEQ5 155 aaPredicted RBP6.14□□□□□ -1.43
SYNE1-208ENST00000367256 FAM168AQ92567 244 aa6.14□□□□□ -1.43
SYNE1-208ENST00000367256 STPG1Q5TH74 334 aa6.13□□□□□ -1.43
SYNE1-208ENST00000367256 TCF20Q9UGU0 1960 aaKnown RBP6.13□□□□□ -1.43
SYNE1-208ENST00000367256 TRAV5A0A0B4J249 113 aa6.13□□□□□ -1.43
SYNE1-208ENST00000367256 TOMM40O96008 361 aa6.13□□□□□ -1.43
SYNE1-208ENST00000367256 NPC2P61916 151 aa6.13□□□□□ -1.43
SYNE1-208ENST00000367256 AGMATQ9BSE5 352 aa6.13□□□□□ -1.43
SYNE1-208ENST00000367256 LAMTOR3Q9UHA4 124 aa6.13□□□□□ -1.43
SYNE1-208ENST00000367256 HOXD3P31249 432 aaPredicted RBP6.13□□□□□ -1.43
SYNE1-208ENST00000367256 TMEM144Q7Z5S9 345 aa6.13□□□□□ -1.43
SYNE1-208ENST00000367256 FBXL15Q9H469 300 aa6.13□□□□□ -1.43
SYNE1-208ENST00000367256 SLC50A1Q9BRV3 221 aa6.13□□□□□ -1.43
SYNE1-208ENST00000367256 LY6G6FQ5SQ64 297 aa6.13□□□□□ -1.43
SYNE1-208ENST00000367256 RAMP3O60896 148 aa6.13□□□□□ -1.43
SYNE1-208ENST00000367256 CDCP2Q5VXM1 449 aa6.13□□□□□ -1.43
SYNE1-208ENST00000367256 JPT2Q9H910 190 aa6.13□□□□□ -1.43
SYNE1-208ENST00000367256 COLCA2A8K830 154 aa6.13□□□□□ -1.43
SYNE1-208ENST00000367256 C12orf77C9JDV5 145 aa6.13□□□□□ -1.43
SYNE1-208ENST00000367256 NBR2O15453 112 aa6.13□□□□□ -1.43
SYNE1-208ENST00000367256 TNFRSF6BO95407 300 aa6.13□□□□□ -1.43
SYNE1-208ENST00000367256 CCL1P22362 96 aa6.13□□□□□ -1.43
SYNE1-208ENST00000367256 FAM166AQ6J272 317 aa6.13□□□□□ -1.43
SYNE1-208ENST00000367256 HS3ST3B1Q9Y662 390 aa6.13□□□□□ -1.43
SYNE1-208ENST00000367256 PRRC2AP48634 2157 aaKnown RBP6.13□□□□□ -1.43
SYNE1-208ENST00000367256 NRXN2Q9P2S2 1712 aa6.13□□□□□ -1.43
SYNE1-208ENST00000367256 A0A1W2PQF6 199 aa6.13□□□□□ -1.43
SYNE1-208ENST00000367256 TBX6O95947 436 aaPredicted RBP6.13□□□□□ -1.43
SYNE1-208ENST00000367256 ZNF415Q09FC8 603 aa6.13□□□□□ -1.43
SYNE1-208ENST00000367256 GAGE1Q13065 139 aa6.13□□□□□ -1.43
SYNE1-208ENST00000367256 GAGE2BQ13066 116 aa6.13□□□□□ -1.43
SYNE1-208ENST00000367256 ZNF106Q9H2Y7 1883 aaKnown RBP6.13□□□□□ -1.43
SYNE1-208ENST00000367256 F2Z2F3 143 aa6.12□□□□□ -1.43
SYNE1-208ENST00000367256 LINC01560Q8TB33 94 aa6.12□□□□□ -1.43
SYNE1-208ENST00000367256 RNF125Q96EQ8 232 aa6.12□□□□□ -1.43
SYNE1-208ENST00000367256 EDA2RQ9HAV5 297 aa6.12□□□□□ -1.43
SYNE1-208ENST00000367256 TRGV4A0A0C4DH28 118 aa6.12□□□□□ -1.43
SYNE1-208ENST00000367256 PRR19A6NJB7 356 aa6.12□□□□□ -1.43
SYNE1-208ENST00000367256 A6NNC1 897 aa6.12□□□□□ -1.43
SYNE1-208ENST00000367256 DTX1Q86Y01 620 aa6.12□□□□□ -1.43
SYNE1-208ENST00000367256 ZIC4Q8N9L1 334 aa6.12□□□□□ -1.43
SYNE1-208ENST00000367256 RNF126Q9BV68 326 aa6.12□□□□□ -1.43
SYNE1-208ENST00000367256 CFHR5Q9BXR6 569 aa6.12□□□□□ -1.43
SYNE1-208ENST00000367256 PVRIGQ6DKI7 326 aa6.12□□□□□ -1.43
SYNE1-208ENST00000367256 UBE2DNLQ8IWF7 75 aa6.12□□□□□ -1.43
SYNE1-208ENST00000367256 LINC00312Q9Y6C7 94 aa6.12□□□□□ -1.43
SYNE1-208ENST00000367256 CEP192Q8TEP8 1941 aa6.12□□□□□ -1.43
SYNE1-208ENST00000367256 NAPSAO96009 420 aa6.12□□□□□ -1.43
SYNE1-208ENST00000367256 LOXL4Q96JB6 756 aa6.12□□□□□ -1.43
SYNE1-208ENST00000367256 LEPROTO15243 131 aa6.12□□□□□ -1.43
SYNE1-208ENST00000367256 CEACAM1P13688 526 aa6.12□□□□□ -1.43
SYNE1-208ENST00000367256 LINC00158P58513 81 aa6.12□□□□□ -1.43
SYNE1-208ENST00000367256 GATD1Q8NB37 220 aa6.12□□□□□ -1.43
SYNE1-208ENST00000367256 OR13A1Q8NGR1 328 aa6.12□□□□□ -1.43
SYNE1-208ENST00000367256 C1QTNF5Q9BXJ0 243 aa6.12□□□□□ -1.43
SYNE1-208ENST00000367256 DENND4CQ5VZ89 1909 aa6.12□□□□□ -1.43
SYNE1-208ENST00000367256 IGHV2OR16-5A0A0B4J2B6 119 aa6.12□□□□□ -1.43
SYNE1-208ENST00000367256 C1QCP02747 245 aa6.12□□□□□ -1.43
SYNE1-208ENST00000367256 C1QTNF9P0C862 333 aa6.12□□□□□ -1.43
SYNE1-208ENST00000367256 APOBEC3AP31941 199 aaPredicted RBP6.12□□□□□ -1.43
SYNE1-208ENST00000367256 TSKUQ8WUA8 353 aa6.12□□□□□ -1.43
SYNE1-208ENST00000367256 IGHV3-11P01762 117 aa6.12□□□□□ -1.43
SYNE1-208ENST00000367256 DPM3Q9P2X0 92 aa6.12□□□□□ -1.43
SYNE1-208ENST00000367256 ASCL4Q6XD76 172 aa6.12□□□□□ -1.43
SYNE1-208ENST00000367256 LINC00114Q6XXX2 140 aa6.12□□□□□ -1.43
SYNE1-208ENST00000367256 CHCHD5Q9BSY4 110 aa6.12□□□□□ -1.43
SYNE1-208ENST00000367256 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.12□□□□□ -1.43
SYNE1-208ENST00000367256 A0A1B0GWJ7 208 aa6.12□□□□□ -1.43
SYNE1-208ENST00000367256 VWC2LB2RUY7 222 aa6.12□□□□□ -1.43
SYNE1-208ENST00000367256 AMBPP02760 352 aa6.12□□□□□ -1.43
SYNE1-208ENST00000367256 PCOLCEQ15113 449 aa6.12□□□□□ -1.43
SYNE1-208ENST00000367256 SIGLEC15Q6ZMC9 328 aa6.12□□□□□ -1.43
SYNE1-208ENST00000367256 C15orf61A6NNL5 157 aa6.11□□□□□ -1.43
SYNE1-208ENST00000367256 EFEMP2O95967 443 aa6.11□□□□□ -1.43
SYNE1-208ENST00000367256 CRYBA2P53672 197 aa6.11□□□□□ -1.43
SYNE1-208ENST00000367256 FAM90A2PQ658T7 463 aa6.11□□□□□ -1.43
SYNE1-208ENST00000367256 DLEU1O43261 78 aa6.11□□□□□ -1.43
SYNE1-208ENST00000367256 ZXDCQ2QGD7 858 aaPredicted RBP6.11□□□□□ -1.43
SYNE1-208ENST00000367256 TEX38Q6PEX7 206 aa6.11□□□□□ -1.43
SYNE1-208ENST00000367256 COLCA1Q6ZS62 124 aa6.11□□□□□ -1.43
SYNE1-208ENST00000367256 DLX4Q92988 240 aaPredicted RBP6.11□□□□□ -1.43
SYNE1-208ENST00000367256 MGAMO43451 1857 aa6.11□□□□□ -1.43
SYNE1-208ENST00000367256 SHISA3A0PJX4 238 aa6.11□□□□□ -1.43
SYNE1-208ENST00000367256 ESDP10768 282 aa6.11□□□□□ -1.43
SYNE1-208ENST00000367256 ADARB2-AS1A8MUL3 147 aa6.11□□□□□ -1.43
SYNE1-208ENST00000367256 C4orf51C9J302 202 aa6.11□□□□□ -1.43
SYNE1-208ENST00000367256 RHOGP84095 191 aa6.11□□□□□ -1.43
SYNE1-208ENST00000367256 WFDC6Q9BQY6 131 aa6.11□□□□□ -1.43
SYNE1-208ENST00000367256 ERG28Q9UKR5 140 aa6.11□□□□□ -1.43
SYNE1-208ENST00000367256 TCRBV4S1A1TA0A5B7 111 aa6.11□□□□□ -1.43
SYNE1-208ENST00000367256 ITGB1BP1O14713 200 aa6.11□□□□□ -1.43
SYNE1-208ENST00000367256 TIMP3P35625 211 aa6.11□□□□□ -1.43
SYNE1-208ENST00000367256 CECR9P0C854 216 aa6.11□□□□□ -1.43
SYNE1-208ENST00000367256 SSBP2P81877 361 aaPredicted RBP6.11□□□□□ -1.43
SYNE1-208ENST00000367256 MRPL27Q9P0M9 148 aaKnown RBP6.11□□□□□ -1.43
SYNE1-208ENST00000367256 ACTL10Q5JWF8 245 aa6.1□□□□□ -1.43
SYNE1-208ENST00000367256 SPRED2Q7Z698 418 aa6.1□□□□□ -1.43
SYNE1-208ENST00000367256 GAGE2AQ6NT46 116 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms