RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 TSSC4Q9Y5U2 329 aaPredicted RBP3.08□□□□□ -1.92
LIG4-201ENST00000356922 CSMD3Q7Z407 3707 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 IGKV3-7A0A075B6H7 116 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 IGHV3-49A0A0A0MS15 119 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP3.07□□□□□ -1.92
LIG4-201ENST00000356922 E5RGE8 158 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 CORTO00230 105 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 SNAPINO95295 136 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 FABP1P07148 127 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 PRB4P10163 310 aaPredicted RBP3.07□□□□□ -1.92
LIG4-201ENST00000356922 CD33P20138 364 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 HOXD3P31249 432 aaPredicted RBP3.07□□□□□ -1.92
LIG4-201ENST00000356922 TAS2R30P59541 319 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 RUNX1Q01196 453 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 OR2F1Q13607 317 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 FHL3Q13643 280 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 FAM106AQ4KMX7 169 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 TM4SF20Q53R12 229 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 OR4F17Q8NGA8 305 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 OR4F4Q96R69 305 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 CYTL1Q9NRR1 136 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 LSM4Q9Y4Z0 139 aaKnown RBP3.07□□□□□ -1.92
LIG4-201ENST00000356922 CCL24O00175 119 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 LGALS1P09382 135 aaKnown RBP3.07□□□□□ -1.92
LIG4-201ENST00000356922 SLC25A4P12235 298 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 C4BPBP20851 252 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 ARL3P36405 182 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 P2RY1P47900 373 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 MEOX2P50222 304 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 SULT1A1P50225 295 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 SYNJ2BPP57105 145 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 SLC38A11Q08AI6 406 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 COTL1Q14019 142 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 MORN5Q5VZ52 161 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 SLC16A13Q7RTY0 426 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 TCTE3Q8IZS6 198 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 DYNLRB2Q8TF09 96 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 MGST2Q99735 147 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 KRTAP3-3Q9BYR6 98 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 KRTAP3-2Q9BYR7 98 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 GAR1Q9NY12 217 aaKnown RBP3.07□□□□□ -1.92
LIG4-201ENST00000356922 PEF1Q9UBV8 284 aaKnown RBP3.07□□□□□ -1.92
LIG4-201ENST00000356922 HSPB11Q9Y547 144 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 DNAH9Q9NYC9 4486 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 IGHV3-66A0A0C4DH42 116 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 LINC00587B1AMM8 73 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 NDUFS6O75380 124 aaKnown RBP3.07□□□□□ -1.92
LIG4-201ENST00000356922 CLN5O75503 358 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 SNRPCP09234 159 aaKnown RBP3.07□□□□□ -1.92
LIG4-201ENST00000356922 OR5G3P0C626 314 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 PSG1P11464 419 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 KLF5Q13887 457 aaPredicted RBP3.07□□□□□ -1.92
LIG4-201ENST00000356922 ANKRD39Q53RE8 183 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 SHISA2Q6UWI4 295 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 PATE2Q6UY27 113 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 OR1S2Q8NGQ3 325 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 OR1N2Q8NGR9 330 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 OR4X1Q8NH49 305 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 RNASEH2CQ8TDP1 164 aaKnown RBP3.07□□□□□ -1.92
LIG4-201ENST00000356922 C4orf3Q8WVX3 66 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 USMG5Q96IX5 58 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 SH3BGRL3Q9H299 93 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 FBXL17Q9UF56 701 aa3.07□□□□□ -1.92
LIG4-201ENST00000356922 FAM223BA6NKX1 122 aa3.06□□□□□ -1.92
LIG4-201ENST00000356922 H3BUA1 57 aa3.06□□□□□ -1.92
LIG4-201ENST00000356922 TGOLN2O43493 480 aa3.06□□□□□ -1.92
LIG4-201ENST00000356922 LINC00869P0C866 280 aa3.06□□□□□ -1.92
LIG4-201ENST00000356922 USF2Q15853 346 aaPredicted RBP3.06□□□□□ -1.92
LIG4-201ENST00000356922 LCE2DQ5TA82 110 aaPredicted RBP3.06□□□□□ -1.92
LIG4-201ENST00000356922 RPL7L1Q6DKI1 246 aaKnown RBP3.06□□□□□ -1.92
LIG4-201ENST00000356922 TOMM20LQ6UXN7 152 aa3.06□□□□□ -1.92
LIG4-201ENST00000356922 COMMD7Q86VX2 200 aa3.06□□□□□ -1.92
LIG4-201ENST00000356922 FAM223AQ8IWN6 122 aa3.06□□□□□ -1.92
LIG4-201ENST00000356922 VN1R17PQ8TDU5 208 aa3.06□□□□□ -1.92
LIG4-201ENST00000356922 Q8WTZ3 238 aa3.06□□□□□ -1.92
LIG4-201ENST00000356922 C17orf77Q96MU5 243 aa3.06□□□□□ -1.92
LIG4-201ENST00000356922 AQP10Q96PS8 301 aa3.06□□□□□ -1.92
LIG4-201ENST00000356922 UHRF2Q96PU4 802 aa3.06□□□□□ -1.92
LIG4-201ENST00000356922 RSG1Q9BU20 258 aa3.06□□□□□ -1.92
LIG4-201ENST00000356922 VSIRQ9H7M9 311 aa3.06□□□□□ -1.92
LIG4-201ENST00000356922 ZFAND3Q9H8U3 227 aa3.06□□□□□ -1.92
LIG4-201ENST00000356922 PUS1Q9Y606 427 aaKnown RBP eCLIP3.06□□□□□ -1.92
LIG4-201ENST00000356922 BORCS7-ASMTA0A0B4J1R7 106 aa3.06□□□□□ -1.92
LIG4-201ENST00000356922 KANTRA0A1W2PQU2 76 aa3.06□□□□□ -1.92
LIG4-201ENST00000356922 IZUMO1RA6ND01 250 aa3.06□□□□□ -1.92
LIG4-201ENST00000356922 ORM2P19652 201 aa3.06□□□□□ -1.92
LIG4-201ENST00000356922 ZP3P21754 424 aa3.06□□□□□ -1.92
LIG4-201ENST00000356922 OR10J1P30954 320 aa3.06□□□□□ -1.92
LIG4-201ENST00000356922 VWC2Q2TAL6 325 aa3.06□□□□□ -1.92
LIG4-201ENST00000356922 LEMD1Q68G75 181 aa3.06□□□□□ -1.92
LIG4-201ENST00000356922 Q6ZRG5 221 aa3.06□□□□□ -1.92
LIG4-201ENST00000356922 NDUFA11Q86Y39 141 aa3.06□□□□□ -1.92
LIG4-201ENST00000356922 SVIPQ8NHG7 77 aa3.06□□□□□ -1.92
LIG4-201ENST00000356922 TMEM37Q8WXS4 190 aa3.06□□□□□ -1.92
LIG4-201ENST00000356922 ELOVL1Q9BW60 279 aa3.06□□□□□ -1.92
LIG4-201ENST00000356922 MFFQ9GZY8 342 aa3.06□□□□□ -1.92
LIG4-201ENST00000356922 TRBV7-1A0A0A6YYK4 115 aa3.06□□□□□ -1.92
LIG4-201ENST00000356922 UBE2L5PA0A1B0GUS4 154 aa3.06□□□□□ -1.92
LIG4-201ENST00000356922 PRSS47A8MTI9 375 aa3.06□□□□□ -1.92
LIG4-201ENST00000356922 AGPAT2O15120 278 aa3.06□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms