RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 OR2K2Q8NGT1 345 aa7.24□□□□□ -1.25
RTN3-202ENST00000339997 SCRT1Q9BWW7 348 aa7.24□□□□□ -1.25
RTN3-202ENST00000339997 MYLKQ15746 1914 aa7.24□□□□□ -1.25
RTN3-202ENST00000339997 A0A1W2PR77 199 aa7.24□□□□□ -1.25
RTN3-202ENST00000339997 RBMY1BA6NDE4 496 aaKnown RBP7.24□□□□□ -1.25
RTN3-202ENST00000339997 RBMY1EA6NEQ0 496 aaKnown RBP7.24□□□□□ -1.25
RTN3-202ENST00000339997 PSPNO60542 156 aa7.24□□□□□ -1.25
RTN3-202ENST00000339997 RBMY1DP0C7P1 496 aaKnown RBP7.24□□□□□ -1.25
RTN3-202ENST00000339997 RBMY1A1P0DJD3 496 aaKnown RBP7.24□□□□□ -1.25
RTN3-202ENST00000339997 RBMY1CP0DJD4 496 aa7.24□□□□□ -1.25
RTN3-202ENST00000339997 LINC01551Q86U37 167 aa7.24□□□□□ -1.25
RTN3-202ENST00000339997 EXOC3-AS1Q8N2X6 119 aa7.24□□□□□ -1.25
RTN3-202ENST00000339997 COQ2Q96H96 371 aa7.24□□□□□ -1.25
RTN3-202ENST00000339997 CFHR5Q9BXR6 569 aa7.24□□□□□ -1.25
RTN3-202ENST00000339997 NPPCP23582 126 aa7.23□□□□□ -1.25
RTN3-202ENST00000339997 MEF2CQ06413 473 aaPredicted RBP7.23□□□□□ -1.25
RTN3-202ENST00000339997 ASCL5Q7RTU5 278 aa7.23□□□□□ -1.25
RTN3-202ENST00000339997 HS3ST6Q96QI5 342 aa7.23□□□□□ -1.25
RTN3-202ENST00000339997 SETD2Q9BYW2 2564 aaPredicted RBP7.23□□□□□ -1.25
RTN3-202ENST00000339997 IGKV1D-33P01593 117 aa7.23□□□□□ -1.25
RTN3-202ENST00000339997 IGKV1-33P01594 117 aa7.23□□□□□ -1.25
RTN3-202ENST00000339997 KLF17Q5JT82 389 aaPredicted RBP7.23□□□□□ -1.25
RTN3-202ENST00000339997 SAXO1Q8IYX7 474 aa7.23□□□□□ -1.25
RTN3-202ENST00000339997 SP7Q8TDD2 431 aaPredicted RBP7.23□□□□□ -1.25
RTN3-202ENST00000339997 IZUMO1RA6ND01 250 aa7.23□□□□□ -1.25
RTN3-202ENST00000339997 HTN3P15516 51 aa7.23□□□□□ -1.25
RTN3-202ENST00000339997 Q6ZVH6 145 aa7.23□□□□□ -1.25
RTN3-202ENST00000339997 FAM89BQ8N5H3 189 aa7.23□□□□□ -1.25
RTN3-202ENST00000339997 LRTM2Q8N967 370 aa7.23□□□□□ -1.25
RTN3-202ENST00000339997 PLXNB2O15031 1838 aa7.23□□□□□ -1.25
RTN3-202ENST00000339997 TMEM50AO95807 157 aa7.23□□□□□ -1.25
RTN3-202ENST00000339997 C3orf79P0CE67 100 aa7.23□□□□□ -1.25
RTN3-202ENST00000339997 FAM106CPP0CH98 169 aa7.23□□□□□ -1.25
RTN3-202ENST00000339997 PSG1P11464 419 aa7.23□□□□□ -1.25
RTN3-202ENST00000339997 COX6B1P14854 86 aa7.23□□□□□ -1.25
RTN3-202ENST00000339997 GTSCR1Q86UQ5 136 aa7.23□□□□□ -1.25
RTN3-202ENST00000339997 ORMDL3Q8N138 153 aa7.23□□□□□ -1.25
RTN3-202ENST00000339997 CIARTQ8N365 385 aaPredicted RBP7.23□□□□□ -1.25
RTN3-202ENST00000339997 LOXL4Q96JB6 756 aa7.23□□□□□ -1.25
RTN3-202ENST00000339997 PRR14LQ5THK1 2151 aa7.23□□□□□ -1.25
RTN3-202ENST00000339997 TRBV24-1A0A075B6N3 115 aa7.22□□□□□ -1.25
RTN3-202ENST00000339997 FAM159AQ6UWV7 190 aa7.22□□□□□ -1.25
RTN3-202ENST00000339997 TREML4Q6UXN2 200 aa7.22□□□□□ -1.25
RTN3-202ENST00000339997 CLEC19AQ6UXS0 136 aa7.22□□□□□ -1.25
RTN3-202ENST00000339997 IGKV1-5P01602 117 aa7.22□□□□□ -1.25
RTN3-202ENST00000339997 NPSP0C0P6 89 aa7.22□□□□□ -1.25
RTN3-202ENST00000339997 TMEM249Q2WGJ8 235 aa7.22□□□□□ -1.25
RTN3-202ENST00000339997 CD300EQ496F6 205 aaPredicted RBP7.22□□□□□ -1.25
RTN3-202ENST00000339997 LHFPL1Q86WI0 220 aa7.22□□□□□ -1.25
RTN3-202ENST00000339997 C1QTNF5Q9BXJ0 243 aa7.22□□□□□ -1.25
RTN3-202ENST00000339997 TRAV21A0A0B4J279 112 aa7.22□□□□□ -1.25
RTN3-202ENST00000339997 IGHV1-2P23083 117 aa7.22□□□□□ -1.25
RTN3-202ENST00000339997 CDKN1AP38936 164 aa7.22□□□□□ -1.25
RTN3-202ENST00000339997 DIRC2Q96SL1 478 aa7.22□□□□□ -1.25
RTN3-202ENST00000339997 ZNF703Q9H7S9 590 aaPredicted RBP7.22□□□□□ -1.25
RTN3-202ENST00000339997 METRNQ9UJH8 293 aa7.22□□□□□ -1.25
RTN3-202ENST00000339997 PINLYPA6NC86 204 aa7.22□□□□□ -1.25
RTN3-202ENST00000339997 CKS1BP61024 79 aa7.22□□□□□ -1.25
RTN3-202ENST00000339997 ZNF585BQ52M93 769 aa7.22□□□□□ -1.25
RTN3-202ENST00000339997 Q6ZT83 130 aa7.22□□□□□ -1.25
RTN3-202ENST00000339997 FER1L6-AS1Q8NA97 138 aa7.22□□□□□ -1.25
RTN3-202ENST00000339997 DNASE2BQ8WZ79 361 aa7.22□□□□□ -1.25
RTN3-202ENST00000339997 VGLL1Q99990 258 aa7.22□□□□□ -1.25
RTN3-202ENST00000339997 AGMATQ9BSE5 352 aa7.22□□□□□ -1.25
RTN3-202ENST00000339997 CLEC7AQ9BXN2 247 aa7.22□□□□□ -1.25
RTN3-202ENST00000339997 PIEZO2Q9H5I5 2752 aa7.21□□□□□ -1.25
RTN3-202ENST00000339997 IGHV1-69-2A0A0G2JMI3 117 aa7.21□□□□□ -1.25
RTN3-202ENST00000339997 CEACAM4O75871 244 aa7.21□□□□□ -1.25
RTN3-202ENST00000339997 TNFSF13O75888 250 aa7.21□□□□□ -1.25
RTN3-202ENST00000339997 FTH1P19P0C7X4 201 aa7.21□□□□□ -1.25
RTN3-202ENST00000339997 CNTFRP26992 372 aa7.21□□□□□ -1.25
RTN3-202ENST00000339997 PDLIM4P50479 330 aa7.21□□□□□ -1.25
RTN3-202ENST00000339997 TMPRSS3P57727 454 aa7.21□□□□□ -1.25
RTN3-202ENST00000339997 FOXF2Q12947 444 aa7.21□□□□□ -1.25
RTN3-202ENST00000339997 TMEM144Q7Z5S9 345 aa7.21□□□□□ -1.25
RTN3-202ENST00000339997 FLVCR1-AS1Q8TAF5 88 aa7.21□□□□□ -1.25
RTN3-202ENST00000339997 MRPL32Q9BYC8 188 aaKnown RBP7.21□□□□□ -1.25
RTN3-202ENST00000339997 FBXL7Q9UJT9 491 aa7.21□□□□□ -1.25
RTN3-202ENST00000339997 MTCL1Q9Y4B5 1905 aaKnown RBP7.21□□□□□ -1.26
RTN3-202ENST00000339997 SCN5AQ14524 2016 aa7.21□□□□□ -1.26
RTN3-202ENST00000339997 KBTBD11-OT1A0A1B0GTJ5 212 aa7.21□□□□□ -1.26
RTN3-202ENST00000339997 E9PLN8 166 aa7.21□□□□□ -1.26
RTN3-202ENST00000339997 IFNL4K9M1U5 179 aa7.21□□□□□ -1.26
RTN3-202ENST00000339997 CRPP02741 224 aa7.21□□□□□ -1.26
RTN3-202ENST00000339997 PRTN3P24158 256 aa7.21□□□□□ -1.26
RTN3-202ENST00000339997 MST1LQ2TV78 715 aa7.21□□□□□ -1.26
RTN3-202ENST00000339997 PILRBQ9UKJ0 227 aa7.21□□□□□ -1.26
RTN3-202ENST00000339997 ZNF257Q9Y2Q1 563 aa7.21□□□□□ -1.26
RTN3-202ENST00000339997 DSCAML1Q8TD84 2053 aa7.21□□□□□ -1.26
RTN3-202ENST00000339997 H7C1H1 209 aa7.21□□□□□ -1.26
RTN3-202ENST00000339997 TDGF1P13385 188 aa7.21□□□□□ -1.26
RTN3-202ENST00000339997 CFHR1Q03591 330 aa7.21□□□□□ -1.26
RTN3-202ENST00000339997 GUSBP1Q15486 140 aa7.21□□□□□ -1.26
RTN3-202ENST00000339997 TMEM186Q96B77 213 aa7.21□□□□□ -1.26
RTN3-202ENST00000339997 ZNRD1Q9P1U0 126 aa7.21□□□□□ -1.26
RTN3-202ENST00000339997 CHD3Q12873 2000 aaKnown RBP7.21□□□□□ -1.26
RTN3-202ENST00000339997 SMKR1H3BMG3 65 aa7.21□□□□□ -1.26
RTN3-202ENST00000339997 C1orf194Q5T5A4 169 aa7.21□□□□□ -1.26
RTN3-202ENST00000339997 DNM1P46Q6ZS02 220 aa7.21□□□□□ -1.26
RTN3-202ENST00000339997 C5orf30Q96GV9 206 aa7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms