RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 CRIP2P52943 208 aaPredicted RBP3.23□□□□□ -1.89
MCF2-201ENST00000338585 CEBPGP53567 150 aa3.23□□□□□ -1.89
MCF2-201ENST00000338585 UBE2G2P60604 165 aa3.23□□□□□ -1.89
MCF2-201ENST00000338585 RHOBP62745 196 aa3.23□□□□□ -1.89
MCF2-201ENST00000338585 KIAA0141Q14154 515 aaPredicted RBP3.23□□□□□ -1.89
MCF2-201ENST00000338585 PEA15Q15121 130 aa3.23□□□□□ -1.89
MCF2-201ENST00000338585 GUCA2BQ16661 112 aa3.23□□□□□ -1.89
MCF2-201ENST00000338585 Q56UQ5 140 aa3.23□□□□□ -1.89
MCF2-201ENST00000338585 ZNF506Q5JVG8 444 aa3.23□□□□□ -1.89
MCF2-201ENST00000338585 ATRAIDQ6UW56 229 aa3.23□□□□□ -1.89
MCF2-201ENST00000338585 C10orf99Q6UWK7 81 aa3.23□□□□□ -1.89
MCF2-201ENST00000338585 LCNL1Q6ZST4 164 aa3.23□□□□□ -1.89
MCF2-201ENST00000338585 OR1B1Q8NGR6 318 aa3.23□□□□□ -1.89
MCF2-201ENST00000338585 ZNF503Q96F45 646 aa3.23□□□□□ -1.89
MCF2-201ENST00000338585 CHRDL1Q9BU40 450 aa3.23□□□□□ -1.89
MCF2-201ENST00000338585 PBDC1Q9BVG4 233 aa3.23□□□□□ -1.89
MCF2-201ENST00000338585 VPREB3Q9UKI3 123 aa3.23□□□□□ -1.89
MCF2-201ENST00000338585 FUT9Q9Y231 359 aa3.23□□□□□ -1.89
MCF2-201ENST00000338585 PAGE4O60829 102 aa3.22□□□□□ -1.89
MCF2-201ENST00000338585 HSPB1P04792 205 aaKnown RBP3.22□□□□□ -1.89
MCF2-201ENST00000338585 SRP19P09132 144 aaKnown RBP3.22□□□□□ -1.89
MCF2-201ENST00000338585 OR10J4P0C629 311 aa3.22□□□□□ -1.89
MCF2-201ENST00000338585 GCHFRP30047 84 aa3.22□□□□□ -1.89
MCF2-201ENST00000338585 PPIFP30405 207 aaKnown RBP3.22□□□□□ -1.89
MCF2-201ENST00000338585 ADMP35318 185 aa3.22□□□□□ -1.89
MCF2-201ENST00000338585 SRP14P37108 136 aaKnown RBP3.22□□□□□ -1.89
MCF2-201ENST00000338585 MFAP4P55083 255 aa3.22□□□□□ -1.89
MCF2-201ENST00000338585 LYZP61626 148 aa3.22□□□□□ -1.89
MCF2-201ENST00000338585 SELENOTP62341 195 aa3.22□□□□□ -1.89
MCF2-201ENST00000338585 C10orf113Q5VZT2 155 aa3.22□□□□□ -1.89
MCF2-201ENST00000338585 LEMD1Q68G75 181 aa3.22□□□□□ -1.89
MCF2-201ENST00000338585 C16orf82Q7Z2V1 217 aa3.22□□□□□ -1.89
MCF2-201ENST00000338585 CYB561D1Q8N8Q1 229 aa3.22□□□□□ -1.89
MCF2-201ENST00000338585 OR5R1Q8NH85 324 aa3.22□□□□□ -1.89
MCF2-201ENST00000338585 ZNF414Q96IQ9 312 aa3.22□□□□□ -1.89
MCF2-201ENST00000338585 FAM167A-AS1Q96KT0 104 aa3.22□□□□□ -1.89
MCF2-201ENST00000338585 CCDC140Q96MF4 163 aa3.22□□□□□ -1.89
MCF2-201ENST00000338585 SLC25A2Q9BXI2 301 aa3.22□□□□□ -1.89
MCF2-201ENST00000338585 KLK15Q9H2R5 256 aa3.22□□□□□ -1.89
MCF2-201ENST00000338585 PRDM13Q9H4Q3 707 aa3.22□□□□□ -1.89
MCF2-201ENST00000338585 DNAJC4Q9NNZ3 241 aa3.22□□□□□ -1.89
MCF2-201ENST00000338585 THYN1Q9P016 225 aa3.22□□□□□ -1.89
MCF2-201ENST00000338585 IGHV3OR16-8A0A075B7F1 116 aa3.22□□□□□ -1.89
MCF2-201ENST00000338585 OR7C2O60412 319 aa3.22□□□□□ -1.89
MCF2-201ENST00000338585 CXorf1O96002 111 aa3.22□□□□□ -1.89
MCF2-201ENST00000338585 TRGV3P03979 118 aa3.22□□□□□ -1.89
MCF2-201ENST00000338585 CTSGP08311 255 aa3.22□□□□□ -1.89
MCF2-201ENST00000338585 RD3LP0DJH9 198 aa3.22□□□□□ -1.89
MCF2-201ENST00000338585 PYYP10082 97 aa3.22□□□□□ -1.89
MCF2-201ENST00000338585 GPR183P32249 361 aa3.22□□□□□ -1.89
MCF2-201ENST00000338585 NPBWR1P48145 328 aa3.22□□□□□ -1.89
MCF2-201ENST00000338585 ATP5G3P48201 142 aa3.22□□□□□ -1.89
MCF2-201ENST00000338585 CD81P60033 236 aa3.22□□□□□ -1.89
MCF2-201ENST00000338585 KLK9Q2XQG4 91 aa3.22□□□□□ -1.89
MCF2-201ENST00000338585 KHDC3LQ587J8 217 aa3.22□□□□□ -1.89
MCF2-201ENST00000338585 LINC00305Q7Z4B0 112 aa3.22□□□□□ -1.89
MCF2-201ENST00000338585 ZNF329Q86UD4 541 aa3.22□□□□□ -1.89
MCF2-201ENST00000338585 NECAP1Q8NC96 275 aa3.22□□□□□ -1.89
MCF2-201ENST00000338585 OR51G1Q8NGK1 321 aa3.22□□□□□ -1.89
MCF2-201ENST00000338585 ZNF502Q8TBZ5 544 aa3.22□□□□□ -1.89
MCF2-201ENST00000338585 TMEM68Q96MH6 324 aa3.22□□□□□ -1.89
MCF2-201ENST00000338585 SLC35B3Q9H1N7 401 aa3.22□□□□□ -1.89
MCF2-201ENST00000338585 VAX2Q9UIW0 290 aa3.22□□□□□ -1.89
MCF2-201ENST00000338585 KLK9Q9UKQ9 250 aa3.22□□□□□ -1.89
MCF2-201ENST00000338585 YTHDF2Q9Y5A9 579 aaKnown RBP3.22□□□□□ -1.89
MCF2-201ENST00000338585 MTORP42345 2549 aa3.22□□□□□ -1.89
MCF2-201ENST00000338585 AP4M1O00189 453 aa3.21□□□□□ -1.9
MCF2-201ENST00000338585 HYPMO75409 117 aa3.21□□□□□ -1.9
MCF2-201ENST00000338585 IFNA1P01562 189 aa3.21□□□□□ -1.9
MCF2-201ENST00000338585 IL4P05112 153 aa3.21□□□□□ -1.9
MCF2-201ENST00000338585 CLEC3BP05452 202 aa3.21□□□□□ -1.9
MCF2-201ENST00000338585 C8orf88P0DMB2 117 aa3.21□□□□□ -1.9
MCF2-201ENST00000338585 PF4V1P10720 104 aa3.21□□□□□ -1.9
MCF2-201ENST00000338585 HIST1H1BP16401 226 aaKnown RBP3.21□□□□□ -1.9
MCF2-201ENST00000338585 TPPP2P59282 170 aa3.21□□□□□ -1.9
MCF2-201ENST00000338585 MEF2BQ02080 365 aaPredicted RBP3.21□□□□□ -1.9
MCF2-201ENST00000338585 USF2Q15853 346 aaPredicted RBP3.21□□□□□ -1.9
MCF2-201ENST00000338585 C10orf91Q5T1B1 145 aa3.21□□□□□ -1.9
MCF2-201ENST00000338585 CLEC19AQ6UXS0 136 aa3.21□□□□□ -1.9
MCF2-201ENST00000338585 Q71RC1 249 aaPredicted RBP3.21□□□□□ -1.9
MCF2-201ENST00000338585 OR5AU1Q8NGC0 362 aa3.21□□□□□ -1.9
MCF2-201ENST00000338585 VN1R17PQ8TDU5 208 aa3.21□□□□□ -1.9
MCF2-201ENST00000338585 PFDN5Q99471 154 aa3.21□□□□□ -1.9
MCF2-201ENST00000338585 ZNF702PQ9H963 129 aa3.21□□□□□ -1.9
MCF2-201ENST00000338585 TECRQ9NZ01 308 aaKnown RBP3.21□□□□□ -1.9
MCF2-201ENST00000338585 CARHSP1Q9Y2V2 147 aaKnown RBP3.21□□□□□ -1.9
MCF2-201ENST00000338585 OTOGQ6ZRI0 2925 aa3.21□□□□□ -1.9
MCF2-201ENST00000338585 WI2-2373I1.2A0A1W2PRP0 233 aa3.21□□□□□ -1.9
MCF2-201ENST00000338585 C11orf94C9JXX5 98 aa3.21□□□□□ -1.9
MCF2-201ENST00000338585 PPP5D1E7EU14 171 aa3.21□□□□□ -1.9
MCF2-201ENST00000338585 H3BTX0 84 aa3.21□□□□□ -1.9
MCF2-201ENST00000338585 TOMM40O96008 361 aa3.21□□□□□ -1.9
MCF2-201ENST00000338585 TRBV12-3P01733 135 aa3.21□□□□□ -1.9
MCF2-201ENST00000338585 IGHV3-11P01762 117 aa3.21□□□□□ -1.9
MCF2-201ENST00000338585 NPPCP23582 126 aa3.21□□□□□ -1.9
MCF2-201ENST00000338585 PSMB3P49720 205 aa3.21□□□□□ -1.9
MCF2-201ENST00000338585 PLP1P60201 277 aa3.21□□□□□ -1.9
MCF2-201ENST00000338585 YPEL3P61236 119 aaPredicted RBP3.21□□□□□ -1.9
MCF2-201ENST00000338585 CFHR3Q02985 330 aa3.21□□□□□ -1.9
MCF2-201ENST00000338585 ATP5G2Q06055 141 aa3.21□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms