RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 OR51G1Q8NGK1 321 aa11.96□□□□□ -0.49
CCDC28A-201ENST00000332797 ST8SIA2Q92186 375 aa11.96□□□□□ -0.49
CCDC28A-201ENST00000332797 RNF2Q99496 336 aa11.96□□□□□ -0.49
CCDC28A-201ENST00000332797 TRGV9Q99603 122 aa11.96□□□□□ -0.49
CCDC28A-201ENST00000332797 OR5AC2Q9NZP5 309 aa11.96□□□□□ -0.49
CCDC28A-201ENST00000332797 PRKDCP78527 4128 aaKnown RBP11.96□□□□□ -0.49
CCDC28A-201ENST00000332797 SORL1Q92673 2214 aa11.96□□□□□ -0.5
CCDC28A-201ENST00000332797 TRAV25A0A0B4J276 109 aa11.95□□□□□ -0.5
CCDC28A-201ENST00000332797 IGSF23A1L1A6 192 aa11.95□□□□□ -0.5
CCDC28A-201ENST00000332797 USF2Q15853 346 aaPredicted RBP11.95□□□□□ -0.5
CCDC28A-201ENST00000332797 TMEM144Q7Z5S9 345 aa11.95□□□□□ -0.5
CCDC28A-201ENST00000332797 PPP1R1CQ8WVI7 109 aa11.95□□□□□ -0.5
CCDC28A-201ENST00000332797 NARS2Q96I59 477 aaKnown RBP11.95□□□□□ -0.5
CCDC28A-201ENST00000332797 PBDC1Q9BVG4 233 aa11.95□□□□□ -0.5
CCDC28A-201ENST00000332797 LSM4Q9Y4Z0 139 aaKnown RBP11.95□□□□□ -0.5
CCDC28A-201ENST00000332797 E5RGE8 158 aa11.95□□□□□ -0.5
CCDC28A-201ENST00000332797 HNRNPCP07910 306 aaKnown RBP eCLIP11.95□□□□□ -0.5
CCDC28A-201ENST00000332797 CXCL3P19876 107 aa11.95□□□□□ -0.5
CCDC28A-201ENST00000332797 CRYBB3P26998 211 aa11.95□□□□□ -0.5
CCDC28A-201ENST00000332797 SLC38A11Q08AI6 406 aa11.95□□□□□ -0.5
CCDC28A-201ENST00000332797 FCN2Q15485 313 aa11.95□□□□□ -0.5
CCDC28A-201ENST00000332797 STX12Q86Y82 276 aa11.95□□□□□ -0.5
CCDC28A-201ENST00000332797 TMEM217Q8N7C4 229 aa11.95□□□□□ -0.5
CCDC28A-201ENST00000332797 RNF125Q96EQ8 232 aa11.95□□□□□ -0.5
CCDC28A-201ENST00000332797 TMEM231Q9H6L2 316 aa11.95□□□□□ -0.5
CCDC28A-201ENST00000332797 VSIRQ9H7M9 311 aa11.95□□□□□ -0.5
CCDC28A-201ENST00000332797 A0A1W2PS18 150 aa11.94□□□□□ -0.5
CCDC28A-201ENST00000332797 FNDC10F2Z333 226 aa11.94□□□□□ -0.5
CCDC28A-201ENST00000332797 H0YIZ8 118 aa11.94□□□□□ -0.5
CCDC28A-201ENST00000332797 SULT1A1P50225 295 aa11.94□□□□□ -0.5
CCDC28A-201ENST00000332797 CD81P60033 236 aa11.94□□□□□ -0.5
CCDC28A-201ENST00000332797 LYZP61626 148 aa11.94□□□□□ -0.5
CCDC28A-201ENST00000332797 TMEM252Q8N6L7 170 aa11.94□□□□□ -0.5
CCDC28A-201ENST00000332797 OR11H7Q8NGC8 314 aa11.94□□□□□ -0.5
CCDC28A-201ENST00000332797 GGACTQ9BVM4 153 aa11.94□□□□□ -0.5
CCDC28A-201ENST00000332797 NPVFQ9HCQ7 196 aa11.94□□□□□ -0.5
CCDC28A-201ENST00000332797 RABAC1Q9UI14 185 aa11.94□□□□□ -0.5
CCDC28A-201ENST00000332797 SMAD5-AS1Q9Y6J3 95 aa11.94□□□□□ -0.5
CCDC28A-201ENST00000332797 IGKV3-7A0A075B6H7 116 aa11.93□□□□□ -0.5
CCDC28A-201ENST00000332797 TSPAN4O14817 238 aa11.93□□□□□ -0.5
CCDC28A-201ENST00000332797 MPC2O95563 127 aa11.93□□□□□ -0.5
CCDC28A-201ENST00000332797 PET100P0DJ07 73 aa11.93□□□□□ -0.5
CCDC28A-201ENST00000332797 TCF24Q7RTU0 167 aa11.93□□□□□ -0.5
CCDC28A-201ENST00000332797 Q8N1Y9 231 aa11.93□□□□□ -0.5
CCDC28A-201ENST00000332797 LILRB2Q8N423 598 aa11.93□□□□□ -0.5
CCDC28A-201ENST00000332797 SPAG8Q99932 426 aaPredicted RBP11.93□□□□□ -0.5
CCDC28A-201ENST00000332797 NEURL2Q9BR09 285 aa11.93□□□□□ -0.5
CCDC28A-201ENST00000332797 DFFBO76075 338 aa11.92□□□□□ -0.5
CCDC28A-201ENST00000332797 CD7P09564 240 aa11.92□□□□□ -0.5
CCDC28A-201ENST00000332797 GATA2P23769 480 aaPredicted RBP11.92□□□□□ -0.5
CCDC28A-201ENST00000332797 P2RY1P47900 373 aa11.92□□□□□ -0.5
CCDC28A-201ENST00000332797 HBG1P69891 147 aa11.92□□□□□ -0.5
CCDC28A-201ENST00000332797 HBG2P69892 147 aa11.92□□□□□ -0.5
CCDC28A-201ENST00000332797 CYP2G1PQ6ZSU1 146 aa11.92□□□□□ -0.5
CCDC28A-201ENST00000332797 BPIFCQ8NFQ6 507 aa11.92□□□□□ -0.5
CCDC28A-201ENST00000332797 GRAMD2BQ96HH9 432 aa11.92□□□□□ -0.5
CCDC28A-201ENST00000332797 EIF2B2P49770 351 aaKnown RBP11.91□□□□□ -0.5
CCDC28A-201ENST00000332797 RPL11P62913 178 aaKnown RBP11.91□□□□□ -0.5
CCDC28A-201ENST00000332797 EWSR1Q01844 656 aaKnown RBP eCLIP11.91□□□□□ -0.5
CCDC28A-201ENST00000332797 TEPPQ6URK8 271 aa11.91□□□□□ -0.5
CCDC28A-201ENST00000332797 TMEM182Q6ZP80 229 aaPredicted RBP11.91□□□□□ -0.5
CCDC28A-201ENST00000332797 SLC25A31Q9H0C2 315 aa11.91□□□□□ -0.5
CCDC28A-201ENST00000332797 U3KQE9 123 aa11.91□□□□□ -0.5
CCDC28A-201ENST00000332797 CFDP00746 253 aaPredicted RBP11.9□□□□□ -0.5
CCDC28A-201ENST00000332797 CD5P06127 495 aa11.9□□□□□ -0.5
CCDC28A-201ENST00000332797 S100A11P31949 105 aa11.9□□□□□ -0.5
CCDC28A-201ENST00000332797 TFPI2P48307 235 aa11.9□□□□□ -0.5
CCDC28A-201ENST00000332797 FAM90A2PQ658T7 463 aa11.9□□□□□ -0.5
CCDC28A-201ENST00000332797 GBGT1Q8N5D6 347 aa11.9□□□□□ -0.5
CCDC28A-201ENST00000332797 RNF126Q9BV68 326 aa11.9□□□□□ -0.5
CCDC28A-201ENST00000332797 TMEM147Q9BVK8 224 aa11.9□□□□□ -0.5
CCDC28A-201ENST00000332797 UQCC1Q9NVA1 299 aa11.9□□□□□ -0.5
CCDC28A-201ENST00000332797 MBD2Q9UBB5 411 aa11.9□□□□□ -0.5
CCDC28A-201ENST00000332797 UBE2L5PA0A1B0GUS4 154 aa11.89□□□□□ -0.51
CCDC28A-201ENST00000332797 OR4C46A6NHA9 309 aa11.89□□□□□ -0.51
CCDC28A-201ENST00000332797 IGHV4-30-4P0DP06 118 aa11.89□□□□□ -0.51
CCDC28A-201ENST00000332797 NUP62P37198 522 aaPredicted RBP11.89□□□□□ -0.51
CCDC28A-201ENST00000332797 NHLH2Q02577 135 aa11.89□□□□□ -0.51
CCDC28A-201ENST00000332797 PPP1R14BQ96C90 147 aa11.89□□□□□ -0.51
CCDC28A-201ENST00000332797 WFDC10AQ9H1F0 79 aa11.89□□□□□ -0.51
CCDC28A-201ENST00000332797 PFDN2Q9UHV9 154 aa11.89□□□□□ -0.51
CCDC28A-201ENST00000332797 ORM2P19652 201 aa11.89□□□□□ -0.51
CCDC28A-201ENST00000332797 SELENOTP62341 195 aa11.89□□□□□ -0.51
CCDC28A-201ENST00000332797 PAFAH1B2P68402 229 aa11.89□□□□□ -0.51
CCDC28A-201ENST00000332797 ATP6V1FQ16864 119 aa11.89□□□□□ -0.51
CCDC28A-201ENST00000332797 C16orf54Q6UWD8 224 aa11.89□□□□□ -0.51
CCDC28A-201ENST00000332797 WFDC3Q8IUB2 231 aa11.89□□□□□ -0.51
CCDC28A-201ENST00000332797 DEFB125Q8N687 156 aa11.89□□□□□ -0.51
CCDC28A-201ENST00000332797 OR1B1Q8NGR6 318 aa11.89□□□□□ -0.51
CCDC28A-201ENST00000332797 GLMPQ8WWB7 406 aa11.89□□□□□ -0.51
CCDC28A-201ENST00000332797 DOK5Q9P104 306 aa11.89□□□□□ -0.51
CCDC28A-201ENST00000332797 A0A1B0GVG6 124 aa11.88□□□□□ -0.51
CCDC28A-201ENST00000332797 OR11H12B2RN74 326 aa11.88□□□□□ -0.51
CCDC28A-201ENST00000332797 DNASE2O00115 360 aaPredicted RBP11.88□□□□□ -0.51
CCDC28A-201ENST00000332797 AGPAT2O15120 278 aa11.88□□□□□ -0.51
CCDC28A-201ENST00000332797 BUB3O43684 328 aa11.88□□□□□ -0.51
CCDC28A-201ENST00000332797 GIPP09681 153 aaPredicted RBP11.88□□□□□ -0.51
CCDC28A-201ENST00000332797 FRMD6-AS1P0C7T7 363 aa11.88□□□□□ -0.51
CCDC28A-201ENST00000332797 LINC00869P0C866 280 aa11.88□□□□□ -0.51
CCDC28A-201ENST00000332797 BAXQ07812 192 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms