RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 TRAV9-1A0A075B6T8 112 aa11.81□□□□□ -0.52
CLCNKA-201ENST00000331433 H3BTX0 84 aa11.81□□□□□ -0.52
CLCNKA-201ENST00000331433 CA1P00915 261 aaPredicted RBP11.81□□□□□ -0.52
CLCNKA-201ENST00000331433 C9orf152Q5JTZ5 239 aa11.81□□□□□ -0.52
CLCNKA-201ENST00000331433 RNF5Q99942 180 aa11.81□□□□□ -0.52
CLCNKA-201ENST00000331433 MRPL18Q9H0U6 180 aaKnown RBP11.81□□□□□ -0.52
CLCNKA-201ENST00000331433 SERTAD4Q9NUC0 356 aa11.81□□□□□ -0.52
CLCNKA-201ENST00000331433 TRAV20A0A0B4J274 112 aa11.81□□□□□ -0.52
CLCNKA-201ENST00000331433 I3L2K1 104 aa11.81□□□□□ -0.52
CLCNKA-201ENST00000331433 ISLRO14498 428 aa11.81□□□□□ -0.52
CLCNKA-201ENST00000331433 NUPR1O60356 82 aa11.81□□□□□ -0.52
CLCNKA-201ENST00000331433 SGK494Q96LW2 274 aa11.81□□□□□ -0.52
CLCNKA-201ENST00000331433 NBR2O15453 112 aa11.8□□□□□ -0.52
CLCNKA-201ENST00000331433 IGLC1P0CG04 106 aa11.8□□□□□ -0.52
CLCNKA-201ENST00000331433 GZMBP10144 247 aa11.8□□□□□ -0.52
CLCNKA-201ENST00000331433 PSG1P11464 419 aa11.8□□□□□ -0.52
CLCNKA-201ENST00000331433 TAS2R60P59551 318 aa11.8□□□□□ -0.52
CLCNKA-201ENST00000331433 HES1Q14469 280 aa11.8□□□□□ -0.52
CLCNKA-201ENST00000331433 GBGT1Q8N5D6 347 aa11.8□□□□□ -0.52
CLCNKA-201ENST00000331433 SPTAN1Q13813 2472 aaKnown RBP11.8□□□□□ -0.52
CLCNKA-201ENST00000331433 ODF3BA8MYP8 253 aa11.8□□□□□ -0.52
CLCNKA-201ENST00000331433 SNURFLB1AK76 121 aa11.8□□□□□ -0.52
CLCNKA-201ENST00000331433 M0R1W7 72 aa11.8□□□□□ -0.52
CLCNKA-201ENST00000331433 PRTN3P24158 256 aa11.8□□□□□ -0.52
CLCNKA-201ENST00000331433 MYCNOSP40205 109 aa11.8□□□□□ -0.52
CLCNKA-201ENST00000331433 LYZP61626 148 aa11.8□□□□□ -0.52
CLCNKA-201ENST00000331433 PAX2Q02962 417 aa11.8□□□□□ -0.52
CLCNKA-201ENST00000331433 JOSD1Q15040 202 aaPredicted RBP11.8□□□□□ -0.52
CLCNKA-201ENST00000331433 SSX2Q16385 188 aa11.8□□□□□ -0.52
CLCNKA-201ENST00000331433 DTX2Q86UW9 622 aa11.8□□□□□ -0.52
CLCNKA-201ENST00000331433 RPH3ALQ9UNE2 315 aa11.8□□□□□ -0.52
CLCNKA-201ENST00000331433 BAGE2Q86Y30 109 aa11.79□□□□□ -0.52
CLCNKA-201ENST00000331433 STXBP6Q8NFX7 210 aa11.79□□□□□ -0.52
CLCNKA-201ENST00000331433 FAM168AQ92567 244 aa11.79□□□□□ -0.52
CLCNKA-201ENST00000331433 TMEM18Q96B42 140 aa11.79□□□□□ -0.52
CLCNKA-201ENST00000331433 PGPA6NDG6 321 aa11.79□□□□□ -0.52
CLCNKA-201ENST00000331433 ZNF705GA8MUZ8 300 aaPredicted RBP11.79□□□□□ -0.52
CLCNKA-201ENST00000331433 SLC25A5P05141 298 aaKnown RBP11.79□□□□□ -0.52
CLCNKA-201ENST00000331433 NBEAP1P0C6P0 100 aa11.79□□□□□ -0.52
CLCNKA-201ENST00000331433 GP9P14770 177 aa11.79□□□□□ -0.52
CLCNKA-201ENST00000331433 ZFP36P26651 326 aaKnown RBP11.79□□□□□ -0.52
CLCNKA-201ENST00000331433 CEACAM3P40198 252 aa11.79□□□□□ -0.52
CLCNKA-201ENST00000331433 CX3CL1P78423 397 aa11.79□□□□□ -0.52
CLCNKA-201ENST00000331433 KLF17Q5JT82 389 aaPredicted RBP11.79□□□□□ -0.52
CLCNKA-201ENST00000331433 GPR6P46095 362 aaPredicted RBP11.78□□□□□ -0.52
CLCNKA-201ENST00000331433 VMO1Q7Z5L0 202 aa11.78□□□□□ -0.52
CLCNKA-201ENST00000331433 DYNAPQ8N1N2 210 aa11.78□□□□□ -0.52
CLCNKA-201ENST00000331433 ACACBO00763 2458 aa11.78□□□□□ -0.52
CLCNKA-201ENST00000331433 K7EIM0 57 aa11.78□□□□□ -0.52
CLCNKA-201ENST00000331433 PLP1P60201 277 aa11.78□□□□□ -0.52
CLCNKA-201ENST00000331433 PRR27Q6MZM9 219 aa11.78□□□□□ -0.52
CLCNKA-201ENST00000331433 RASL11BQ9BPW5 248 aa11.78□□□□□ -0.52
CLCNKA-201ENST00000331433 PRO1933Q9H354 126 aa11.78□□□□□ -0.52
CLCNKA-201ENST00000331433 TP53TG3Q9ULZ0 132 aa11.78□□□□□ -0.52
CLCNKA-201ENST00000331433 EPDR1Q9UM22 224 aa11.78□□□□□ -0.52
CLCNKA-201ENST00000331433 HIGD1AQ9Y241 93 aa11.78□□□□□ -0.52
CLCNKA-201ENST00000331433 IGKV1-17P01599 117 aa11.77□□□□□ -0.53
CLCNKA-201ENST00000331433 UQCRFS1P47985 274 aa11.77□□□□□ -0.53
CLCNKA-201ENST00000331433 DNLZQ5SXM8 178 aa11.77□□□□□ -0.53
CLCNKA-201ENST00000331433 MRPL54Q6P161 138 aaKnown RBP11.77□□□□□ -0.53
CLCNKA-201ENST00000331433 OR5R1Q8NH85 324 aa11.77□□□□□ -0.53
CLCNKA-201ENST00000331433 UBTD1Q9HAC8 227 aa11.77□□□□□ -0.53
CLCNKA-201ENST00000331433 S4R3C0 116 aa11.77□□□□□ -0.53
CLCNKA-201ENST00000331433 PKD1L2Q7Z442 2459 aa11.77□□□□□ -0.53
CLCNKA-201ENST00000331433 SMIM27A0A1W2PRY6 76 aa11.77□□□□□ -0.53
CLCNKA-201ENST00000331433 NDUFA3O95167 84 aa11.77□□□□□ -0.53
CLCNKA-201ENST00000331433 NPBQ8NG41 125 aa11.77□□□□□ -0.53
CLCNKA-201ENST00000331433 NAT8BQ9UHF3 227 aa11.77□□□□□ -0.53
CLCNKA-201ENST00000331433 CRISP2P16562 243 aa11.76□□□□□ -0.53
CLCNKA-201ENST00000331433 UBE2G1P62253 170 aa11.76□□□□□ -0.53
CLCNKA-201ENST00000331433 ZNF600Q6ZNG1 722 aa11.76□□□□□ -0.53
CLCNKA-201ENST00000331433 GNB1LQ9BYB4 327 aa11.76□□□□□ -0.53
CLCNKA-201ENST00000331433 CACNA1BQ00975 2339 aa11.76□□□□□ -0.53
CLCNKA-201ENST00000331433 LINC00310P59036 64 aa11.76□□□□□ -0.53
CLCNKA-201ENST00000331433 RAB4BP61018 213 aa11.76□□□□□ -0.53
CLCNKA-201ENST00000331433 TMEM183BQ1AE95 376 aa11.76□□□□□ -0.53
CLCNKA-201ENST00000331433 C5orf64Q2M2E5 130 aa11.76□□□□□ -0.53
CLCNKA-201ENST00000331433 SRSF8Q9BRL6 282 aaKnown RBP11.76□□□□□ -0.53
CLCNKA-201ENST00000331433 SLC25A39Q9BZJ4 359 aaPredicted RBP11.76□□□□□ -0.53
CLCNKA-201ENST00000331433 F2Z2F3 143 aa11.75□□□□□ -0.53
CLCNKA-201ENST00000331433 KIAA1644Q3SXP7 199 aa11.75□□□□□ -0.53
CLCNKA-201ENST00000331433 NUDT10Q8NFP7 164 aa11.75□□□□□ -0.53
CLCNKA-201ENST00000331433 NUDT11Q96G61 164 aa11.75□□□□□ -0.53
CLCNKA-201ENST00000331433 Q9H3A6 140 aa11.75□□□□□ -0.53
CLCNKA-201ENST00000331433 COL12A1Q99715 3063 aa11.75□□□□□ -0.53
CLCNKA-201ENST00000331433 NCBP2LA6PVI3 153 aaKnown RBP11.75□□□□□ -0.53
CLCNKA-201ENST00000331433 HOXB4P17483 251 aaPredicted RBP11.75□□□□□ -0.53
CLCNKA-201ENST00000331433 NDPQ00604 133 aa11.75□□□□□ -0.53
CLCNKA-201ENST00000331433 TMEM136Q6ZRR5 245 aa11.75□□□□□ -0.53
CLCNKA-201ENST00000331433 CMTM2Q8TAZ6 248 aa11.75□□□□□ -0.53
CLCNKA-201ENST00000331433 RBM14Q96PK6 669 aaKnown RBP11.75□□□□□ -0.53
CLCNKA-201ENST00000331433 PRORYQ9H606 182 aa11.75□□□□□ -0.53
CLCNKA-201ENST00000331433 VPS13CQ709C8 3753 aa11.74□□□□□ -0.53
CLCNKA-201ENST00000331433 TRBV9A0A0B4J1U6 114 aa11.74□□□□□ -0.53
CLCNKA-201ENST00000331433 GATCO43716 136 aaKnown RBP11.74□□□□□ -0.53
CLCNKA-201ENST00000331433 SERF1AO75920 110 aa11.74□□□□□ -0.53
CLCNKA-201ENST00000331433 C7orf69Q9H7B7 122 aa11.74□□□□□ -0.53
CLCNKA-201ENST00000331433 C19orf84I3L1E1 186 aa11.74□□□□□ -0.53
CLCNKA-201ENST00000331433 TOX4O94842 621 aa11.74□□□□□ -0.53
CLCNKA-201ENST00000331433 FAM209BQ5JX69 171 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms