RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 ZNF414Q96IQ9 312 aa8.4□□□□□ -1.06
CHD3-201ENST00000330494 PRSS22Q9GZN4 317 aa8.4□□□□□ -1.06
CHD3-201ENST00000330494 NPFFR1Q9GZQ6 430 aa8.4□□□□□ -1.06
CHD3-201ENST00000330494 CRIM1Q9NZV1 1036 aa8.4□□□□□ -1.06
CHD3-201ENST00000330494 NDUFA3O95167 84 aa8.4□□□□□ -1.06
CHD3-201ENST00000330494 C1QTNF9P0C862 333 aa8.4□□□□□ -1.06
CHD3-201ENST00000330494 APOMO95445 188 aa8.4□□□□□ -1.06
CHD3-201ENST00000330494 FMC1Q96HJ9 113 aa8.4□□□□□ -1.06
CHD3-201ENST00000330494 RPP21Q9H633 154 aaKnown RBP8.4□□□□□ -1.06
CHD3-201ENST00000330494 NDPQ00604 133 aa8.4□□□□□ -1.07
CHD3-201ENST00000330494 RNF125Q96EQ8 232 aa8.4□□□□□ -1.07
CHD3-201ENST00000330494 ASCL2Q99929 193 aa8.4□□□□□ -1.07
CHD3-201ENST00000330494 TOMM7Q9P0U1 55 aa8.4□□□□□ -1.07
CHD3-201ENST00000330494 USF3Q68DE3 2245 aa8.4□□□□□ -1.07
CHD3-201ENST00000330494 GZMBP10144 247 aa8.39□□□□□ -1.07
CHD3-201ENST00000330494 FAM89BQ8N5H3 189 aa8.39□□□□□ -1.07
CHD3-201ENST00000330494 DNAL4O96015 105 aa8.39□□□□□ -1.07
CHD3-201ENST00000330494 CCL20P78556 96 aa8.39□□□□□ -1.07
CHD3-201ENST00000330494 ZNF474Q6S9Z5 364 aaPredicted RBP8.39□□□□□ -1.07
CHD3-201ENST00000330494 FER1L6-AS1Q8NA97 138 aa8.39□□□□□ -1.07
CHD3-201ENST00000330494 DLEU1O43261 78 aa8.39□□□□□ -1.07
CHD3-201ENST00000330494 ZNF329Q86UD4 541 aa8.39□□□□□ -1.07
CHD3-201ENST00000330494 TTC9CQ8N5M4 171 aa8.39□□□□□ -1.07
CHD3-201ENST00000330494 IGKV2-40A0A087WW87 121 aaPredicted RBP8.39□□□□□ -1.07
CHD3-201ENST00000330494 IGKV2D-40P01614 121 aaPredicted RBP8.39□□□□□ -1.07
CHD3-201ENST00000330494 IGHV1-8P0DP01 117 aa8.39□□□□□ -1.07
CHD3-201ENST00000330494 SPATA31B1PQ5VZV4 182 aa8.39□□□□□ -1.07
CHD3-201ENST00000330494 LINC00614P0C842 121 aa8.38□□□□□ -1.07
CHD3-201ENST00000330494 TMEM144Q7Z5S9 345 aa8.38□□□□□ -1.07
CHD3-201ENST00000330494 CACNG8Q8WXS5 425 aa8.38□□□□□ -1.07
CHD3-201ENST00000330494 C5orf30Q96GV9 206 aa8.38□□□□□ -1.07
CHD3-201ENST00000330494 SDF2L1Q9HCN8 221 aa8.38□□□□□ -1.07
CHD3-201ENST00000330494 WNT2P09544 360 aa8.38□□□□□ -1.07
CHD3-201ENST00000330494 SRSF4Q08170 494 aaKnown RBP8.38□□□□□ -1.07
CHD3-201ENST00000330494 A0A1B0GUT8 65 aa8.38□□□□□ -1.07
CHD3-201ENST00000330494 HGFACQ04756 655 aa8.38□□□□□ -1.07
CHD3-201ENST00000330494 C1QL4Q86Z23 238 aa8.38□□□□□ -1.07
CHD3-201ENST00000330494 MRAP2Q96G30 205 aa8.38□□□□□ -1.07
CHD3-201ENST00000330494 PEMTQ9UBM1 199 aa8.38□□□□□ -1.07
CHD3-201ENST00000330494 IGFL4Q6B9Z1 124 aa8.38□□□□□ -1.07
CHD3-201ENST00000330494 KMT2EQ8IZD2 1858 aa8.38□□□□□ -1.07
CHD3-201ENST00000330494 SRRM5B3KS81 715 aa8.38□□□□□ -1.07
CHD3-201ENST00000330494 SERF1AO75920 110 aa8.38□□□□□ -1.07
CHD3-201ENST00000330494 EFNB3Q15768 340 aa8.38□□□□□ -1.07
CHD3-201ENST00000330494 TMEM167AQ8TBQ9 72 aa8.38□□□□□ -1.07
CHD3-201ENST00000330494 VCX2Q9H322 139 aa8.38□□□□□ -1.07
CHD3-201ENST00000330494 IGHV1-3A0A0C4DH29 117 aa8.38□□□□□ -1.07
CHD3-201ENST00000330494 IGHV4-39P01824 125 aa8.38□□□□□ -1.07
CHD3-201ENST00000330494 RPL23P62829 140 aaKnown RBP8.38□□□□□ -1.07
CHD3-201ENST00000330494 EXOC3-AS1Q8N2X6 119 aa8.38□□□□□ -1.07
CHD3-201ENST00000330494 SCGB3A1Q96QR1 104 aa8.38□□□□□ -1.07
CHD3-201ENST00000330494 IGHV3-73A0A0B4J1V6 119 aa8.37□□□□□ -1.07
CHD3-201ENST00000330494 OR11H12B2RN74 326 aa8.37□□□□□ -1.07
CHD3-201ENST00000330494 H3BUX3 64 aa8.37□□□□□ -1.07
CHD3-201ENST00000330494 TPTE2P1Q5T6R2 138 aa8.37□□□□□ -1.07
CHD3-201ENST00000330494 OR11H1Q8NG94 326 aa8.37□□□□□ -1.07
CHD3-201ENST00000330494 OR11H2Q8NH07 326 aa8.37□□□□□ -1.07
CHD3-201ENST00000330494 HS3ST6Q96QI5 342 aa8.37□□□□□ -1.07
CHD3-201ENST00000330494 GTSF1LQ9H1H1 148 aa8.37□□□□□ -1.07
CHD3-201ENST00000330494 TMEM250H0YL14 139 aa8.37□□□□□ -1.07
CHD3-201ENST00000330494 BPESC1Q9GZL8 116 aa8.37□□□□□ -1.07
CHD3-201ENST00000330494 C11orf68Q9H3H3 251 aaKnown RBP8.37□□□□□ -1.07
CHD3-201ENST00000330494 ADMP35318 185 aa8.37□□□□□ -1.07
CHD3-201ENST00000330494 ATP5IP56385 69 aaPredicted RBP8.37□□□□□ -1.07
CHD3-201ENST00000330494 PAX8Q06710 450 aa8.37□□□□□ -1.07
CHD3-201ENST00000330494 C15orf32Q32M92 178 aa8.37□□□□□ -1.07
CHD3-201ENST00000330494 C20orf204Q6ZNR8 217 aa8.37□□□□□ -1.07
CHD3-201ENST00000330494 SCRT1Q9BWW7 348 aa8.37□□□□□ -1.07
CHD3-201ENST00000330494 NHP2Q9NX24 153 aaKnown RBP8.37□□□□□ -1.07
CHD3-201ENST00000330494 CA7P43166 264 aa8.37□□□□□ -1.07
CHD3-201ENST00000330494 ARTNQ5T4W7 220 aa8.37□□□□□ -1.07
CHD3-201ENST00000330494 Q71RC1 249 aaPredicted RBP8.37□□□□□ -1.07
CHD3-201ENST00000330494 TMEM101Q96IK0 257 aa8.37□□□□□ -1.07
CHD3-201ENST00000330494 GAFA1Q96PS6 74 aa8.37□□□□□ -1.07
CHD3-201ENST00000330494 E7EQL1 145 aa8.37□□□□□ -1.07
CHD3-201ENST00000330494 PRCDQ00LT1 54 aa8.37□□□□□ -1.07
CHD3-201ENST00000330494 C8orf46Q8TAG6 207 aa8.37□□□□□ -1.07
CHD3-201ENST00000330494 ZNF257Q9Y2Q1 563 aa8.37□□□□□ -1.07
CHD3-201ENST00000330494 EFNA4P52798 201 aa8.37□□□□□ -1.07
CHD3-201ENST00000330494 CIRBPQ14011 172 aaKnown RBP8.37□□□□□ -1.07
CHD3-201ENST00000330494 PSMG4Q5JS54 123 aa8.37□□□□□ -1.07
CHD3-201ENST00000330494 RUSC1-AS1Q66K80 236 aa8.37□□□□□ -1.07
CHD3-201ENST00000330494 NRN1Q9NPD7 142 aa8.37□□□□□ -1.07
CHD3-201ENST00000330494 NBASA2RRP1 2371 aa8.37□□□□□ -1.07
CHD3-201ENST00000330494 ZNF815PA8K554 130 aa8.36□□□□□ -1.07
CHD3-201ENST00000330494 PMS2P5A8MQ11 134 aa8.36□□□□□ -1.07
CHD3-201ENST00000330494 HIST1H2BKO60814 126 aa8.36□□□□□ -1.07
CHD3-201ENST00000330494 TMEM50AO95807 157 aa8.36□□□□□ -1.07
CHD3-201ENST00000330494 HIST1H2BJP06899 126 aa8.36□□□□□ -1.07
CHD3-201ENST00000330494 HIST1H2BOP23527 126 aa8.36□□□□□ -1.07
CHD3-201ENST00000330494 HIST1H2BBP33778 126 aa8.36□□□□□ -1.07
CHD3-201ENST00000330494 HIST1H2BDP58876 126 aa8.36□□□□□ -1.07
CHD3-201ENST00000330494 HIST1H2BCP62807 126 aa8.36□□□□□ -1.07
CHD3-201ENST00000330494 HIST2H2BEQ16778 126 aa8.36□□□□□ -1.07
CHD3-201ENST00000330494 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.36□□□□□ -1.07
CHD3-201ENST00000330494 HIST1H2BHQ93079 126 aa8.36□□□□□ -1.07
CHD3-201ENST00000330494 HIST1H2BNQ99877 126 aa8.36□□□□□ -1.07
CHD3-201ENST00000330494 HIST1H2BMQ99879 126 aa8.36□□□□□ -1.07
CHD3-201ENST00000330494 OTORQ9NRC9 128 aa8.36□□□□□ -1.07
CHD3-201ENST00000330494 NPIPB5A8MRT5 1133 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms