RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 THAP8Q8NA92 274 aa12.9□□□□□ -0.34
USHBP1-202ENST00000324554 NRN1Q9NPD7 142 aa12.9□□□□□ -0.34
USHBP1-202ENST00000324554 NGBQ9NPG2 151 aa12.9□□□□□ -0.34
USHBP1-202ENST00000324554 AMMECR1Q9Y4X0 333 aaPredicted RBP12.9□□□□□ -0.34
USHBP1-202ENST00000324554 SIAH2O43255 324 aa12.9□□□□□ -0.34
USHBP1-202ENST00000324554 G0S2P27469 103 aa12.9□□□□□ -0.34
USHBP1-202ENST00000324554 UQCRFS1P47985 274 aa12.9□□□□□ -0.34
USHBP1-202ENST00000324554 AMTP48728 403 aa12.9□□□□□ -0.34
USHBP1-202ENST00000324554 RPL19P84098 196 aaKnown RBP12.9□□□□□ -0.34
USHBP1-202ENST00000324554 OR1L4Q8NGR5 311 aa12.9□□□□□ -0.34
USHBP1-202ENST00000324554 KCNS1Q96KK3 526 aa12.9□□□□□ -0.34
USHBP1-202ENST00000324554 IGHV3-72A0A0B4J1Y9 119 aa12.89□□□□□ -0.35
USHBP1-202ENST00000324554 IGHV1-69-2A0A0G2JMI3 117 aa12.89□□□□□ -0.35
USHBP1-202ENST00000324554 FSTL3O95633 263 aa12.89□□□□□ -0.35
USHBP1-202ENST00000324554 PMCHP20382 165 aa12.89□□□□□ -0.35
USHBP1-202ENST00000324554 SLAQ13239 276 aa12.89□□□□□ -0.35
USHBP1-202ENST00000324554 ZNF124Q15973 351 aa12.89□□□□□ -0.35
USHBP1-202ENST00000324554 RUSC1-AS1Q66K80 236 aa12.89□□□□□ -0.35
USHBP1-202ENST00000324554 ZNF329Q86UD4 541 aa12.89□□□□□ -0.35
USHBP1-202ENST00000324554 PAXXQ9BUH6 204 aa12.89□□□□□ -0.35
USHBP1-202ENST00000324554 TMEM133Q9H2Q1 129 aa12.89□□□□□ -0.35
USHBP1-202ENST00000324554 IZUMO1RA6ND01 250 aa12.89□□□□□ -0.35
USHBP1-202ENST00000324554 HLA-DQA1P01909 254 aa12.89□□□□□ -0.35
USHBP1-202ENST00000324554 BPIFB3P59826 476 aa12.89□□□□□ -0.35
USHBP1-202ENST00000324554 ZNF586Q9NXT0 402 aa12.89□□□□□ -0.35
USHBP1-202ENST00000324554 ENSAO43768 121 aaKnown RBP12.88□□□□□ -0.35
USHBP1-202ENST00000324554 LGALS7P47929 136 aa12.88□□□□□ -0.35
USHBP1-202ENST00000324554 COX19Q49B96 90 aa12.88□□□□□ -0.35
USHBP1-202ENST00000324554 HRNRQ86YZ3 2850 aaPredicted RBP12.88□□□□□ -0.35
USHBP1-202ENST00000324554 IGLC7A0M8Q6 106 aa12.88□□□□□ -0.35
USHBP1-202ENST00000324554 DIRC3C9JPN6 131 aa12.88□□□□□ -0.35
USHBP1-202ENST00000324554 FXYD5Q96DB9 178 aa12.88□□□□□ -0.35
USHBP1-202ENST00000324554 MBD6Q96DN6 1003 aa12.88□□□□□ -0.35
USHBP1-202ENST00000324554 PEX7O00628 323 aa12.87□□□□□ -0.35
USHBP1-202ENST00000324554 APCSP02743 223 aa12.87□□□□□ -0.35
USHBP1-202ENST00000324554 APOBEC3AP31941 199 aaPredicted RBP12.87□□□□□ -0.35
USHBP1-202ENST00000324554 DLX1P56177 255 aa12.87□□□□□ -0.35
USHBP1-202ENST00000324554 LHFPL4Q7Z7J7 247 aa12.87□□□□□ -0.35
USHBP1-202ENST00000324554 FAM19A2Q8N3H0 131 aa12.87□□□□□ -0.35
USHBP1-202ENST00000324554 CFAP46Q8IYW2 2715 aa12.87□□□□□ -0.35
USHBP1-202ENST00000324554 C22orf46C9J442 243 aa12.87□□□□□ -0.35
USHBP1-202ENST00000324554 ZNF324O75467 553 aaPredicted RBP12.87□□□□□ -0.35
USHBP1-202ENST00000324554 CD3EP07766 207 aa12.87□□□□□ -0.35
USHBP1-202ENST00000324554 GNG5P63218 68 aa12.87□□□□□ -0.35
USHBP1-202ENST00000324554 GDF5OSQ5U4N7 250 aa12.87□□□□□ -0.35
USHBP1-202ENST00000324554 HCP5Q6MZN7 132 aa12.87□□□□□ -0.35
USHBP1-202ENST00000324554 LINC00305Q7Z4B0 112 aa12.87□□□□□ -0.35
USHBP1-202ENST00000324554 NIT1Q86X76 327 aa12.87□□□□□ -0.35
USHBP1-202ENST00000324554 CACNA1BQ00975 2339 aa12.87□□□□□ -0.35
USHBP1-202ENST00000324554 A6NNC1 897 aa12.86□□□□□ -0.35
USHBP1-202ENST00000324554 MOSP00540 346 aa12.86□□□□□ -0.35
USHBP1-202ENST00000324554 MFAP2P55001 183 aa12.86□□□□□ -0.35
USHBP1-202ENST00000324554 ZNF841Q6ZN19 808 aa12.86□□□□□ -0.35
USHBP1-202ENST00000324554 NUDT10Q8NFP7 164 aa12.86□□□□□ -0.35
USHBP1-202ENST00000324554 TSKUQ8WUA8 353 aa12.86□□□□□ -0.35
USHBP1-202ENST00000324554 NUDT11Q96G61 164 aa12.86□□□□□ -0.35
USHBP1-202ENST00000324554 IGSF10Q6WRI0 2623 aa12.86□□□□□ -0.35
USHBP1-202ENST00000324554 IGHV2-26A0A0B4J1V2 119 aa12.86□□□□□ -0.35
USHBP1-202ENST00000324554 B9A039 149 aa12.86□□□□□ -0.35
USHBP1-202ENST00000324554 CRYGCP07315 174 aa12.86□□□□□ -0.35
USHBP1-202ENST00000324554 CNTFRP26992 372 aa12.86□□□□□ -0.35
USHBP1-202ENST00000324554 PRB3Q04118 309 aaPredicted RBP12.86□□□□□ -0.35
USHBP1-202ENST00000324554 PVRIGQ6DKI7 326 aa12.86□□□□□ -0.35
USHBP1-202ENST00000324554 PRR27Q6MZM9 219 aa12.86□□□□□ -0.35
USHBP1-202ENST00000324554 C19orf35Q6ZS72 473 aa12.86□□□□□ -0.35
USHBP1-202ENST00000324554 TEX45Q8NA69 505 aa12.86□□□□□ -0.35
USHBP1-202ENST00000324554 ZNF331Q9NQX6 463 aaPredicted RBP12.86□□□□□ -0.35
USHBP1-202ENST00000324554 M0QZK8 103 aa12.85□□□□□ -0.35
USHBP1-202ENST00000324554 IGLV1-47P01700 117 aa12.85□□□□□ -0.35
USHBP1-202ENST00000324554 FAM231DQ6ZW35 169 aa12.85□□□□□ -0.35
USHBP1-202ENST00000324554 NUP35Q8NFH5 326 aa12.85□□□□□ -0.35
USHBP1-202ENST00000324554 C18orf32Q8TCD1 76 aa12.85□□□□□ -0.35
USHBP1-202ENST00000324554 TNFRSF14Q92956 283 aa12.85□□□□□ -0.35
USHBP1-202ENST00000324554 SGK494Q96LW2 274 aa12.85□□□□□ -0.35
USHBP1-202ENST00000324554 TMEM68Q96MH6 324 aa12.85□□□□□ -0.35
USHBP1-202ENST00000324554 TNFRSF19Q9NS68 423 aa12.85□□□□□ -0.35
USHBP1-202ENST00000324554 TACC2O95359 2948 aa12.85□□□□□ -0.35
USHBP1-202ENST00000324554 LYNX1G3V0Z9 82 aa12.84□□□□□ -0.35
USHBP1-202ENST00000324554 CRYGBP07316 175 aa12.84□□□□□ -0.35
USHBP1-202ENST00000324554 C3orf79P0CE67 100 aa12.84□□□□□ -0.35
USHBP1-202ENST00000324554 LYNX1P0DP58 116 aa12.84□□□□□ -0.35
USHBP1-202ENST00000324554 ZNF25P17030 456 aaPredicted RBP12.84□□□□□ -0.35
USHBP1-202ENST00000324554 MYCNOSP40205 109 aa12.84□□□□□ -0.35
USHBP1-202ENST00000324554 CTRLP40313 264 aa12.84□□□□□ -0.35
USHBP1-202ENST00000324554 TNXAQ16473 311 aa12.84□□□□□ -0.35
USHBP1-202ENST00000324554 ETFRF1Q6IPR1 90 aa12.84□□□□□ -0.35
USHBP1-202ENST00000324554 C7orf69Q9H7B7 122 aa12.84□□□□□ -0.35
USHBP1-202ENST00000324554 CORTO00230 105 aa12.84□□□□□ -0.35
USHBP1-202ENST00000324554 RPLP1P05386 114 aaKnown RBP12.84□□□□□ -0.35
USHBP1-202ENST00000324554 APELAP0DMC3 54 aa12.84□□□□□ -0.35
USHBP1-202ENST00000324554 GNLYP22749 145 aa12.84□□□□□ -0.35
USHBP1-202ENST00000324554 RPL27AP46776 148 aaKnown RBP12.84□□□□□ -0.35
USHBP1-202ENST00000324554 MRPL52Q86TS9 123 aaKnown RBP12.84□□□□□ -0.35
USHBP1-202ENST00000324554 OR4B1Q8NGF8 309 aa12.84□□□□□ -0.35
USHBP1-202ENST00000324554 WIPF2Q8TF74 440 aaPredicted RBP12.84□□□□□ -0.35
USHBP1-202ENST00000324554 VWC2LB2RUY7 222 aa12.83□□□□□ -0.35
USHBP1-202ENST00000324554 ORM2P19652 201 aa12.83□□□□□ -0.35
USHBP1-202ENST00000324554 OR1B1Q8NGR6 318 aa12.83□□□□□ -0.35
USHBP1-202ENST00000324554 SFTPCP11686 197 aa12.83□□□□□ -0.36
USHBP1-202ENST00000324554 NTF3P20783 257 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms