RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 PROK2Q9HC23 129 aa11.06□□□□□ -0.64
RFFL-201ENST00000315249 FREM1Q5H8C1 2179 aa11.06□□□□□ -0.64
RFFL-201ENST00000315249 H0YJW9 148 aa11.06□□□□□ -0.64
RFFL-201ENST00000315249 PRTN3P24158 256 aa11.06□□□□□ -0.64
RFFL-201ENST00000315249 TMEM42Q69YG0 159 aa11.06□□□□□ -0.64
RFFL-201ENST00000315249 C1orf122Q6ZSJ8 110 aa11.06□□□□□ -0.64
RFFL-201ENST00000315249 KCNS1Q96KK3 526 aa11.06□□□□□ -0.64
RFFL-201ENST00000315249 IGHV1-69DA0A0B4J2H0 117 aa11.06□□□□□ -0.64
RFFL-201ENST00000315249 IGHV1-69P01742 117 aa11.06□□□□□ -0.64
RFFL-201ENST00000315249 ATP5G3P48201 142 aa11.06□□□□□ -0.64
RFFL-201ENST00000315249 RNF166Q96A37 237 aaPredicted RBP11.06□□□□□ -0.64
RFFL-201ENST00000315249 C18orf12Q96KH6 178 aa11.06□□□□□ -0.64
RFFL-201ENST00000315249 MRAP2Q96G30 205 aa11.06□□□□□ -0.64
RFFL-201ENST00000315249 PEF1Q9UBV8 284 aaKnown RBP11.06□□□□□ -0.64
RFFL-201ENST00000315249 FABP5P3A8MUU1 101 aa11.05□□□□□ -0.64
RFFL-201ENST00000315249 HSPB9Q9BQS6 159 aa11.05□□□□□ -0.64
RFFL-201ENST00000315249 TRAV21A0A0B4J279 112 aa11.05□□□□□ -0.64
RFFL-201ENST00000315249 FCN3O75636 299 aa11.05□□□□□ -0.64
RFFL-201ENST00000315249 PAPPA-AS1Q5QFB9 102 aa11.05□□□□□ -0.64
RFFL-201ENST00000315249 OR10AG1Q8NH19 301 aa11.05□□□□□ -0.64
RFFL-201ENST00000315249 OTORQ9NRC9 128 aa11.05□□□□□ -0.64
RFFL-201ENST00000315249 TNCP24821 2201 aa11.05□□□□□ -0.64
RFFL-201ENST00000315249 J3QRE1 110 aa11.05□□□□□ -0.64
RFFL-201ENST00000315249 FOXA3P55318 350 aaPredicted RBP11.05□□□□□ -0.64
RFFL-201ENST00000315249 HBBP68871 147 aa11.05□□□□□ -0.64
RFFL-201ENST00000315249 DTX2Q86UW9 622 aa11.05□□□□□ -0.64
RFFL-201ENST00000315249 SLC17A3O00476 420 aa11.05□□□□□ -0.64
RFFL-201ENST00000315249 PSCAO43653 123 aa11.05□□□□□ -0.64
RFFL-201ENST00000315249 OR1P1Q8NH06 330 aa11.05□□□□□ -0.64
RFFL-201ENST00000315249 GCSAMLQ5JQS6 135 aa11.04□□□□□ -0.64
RFFL-201ENST00000315249 USMG5Q96IX5 58 aa11.04□□□□□ -0.64
RFFL-201ENST00000315249 TMEM160Q9NX00 188 aa11.04□□□□□ -0.64
RFFL-201ENST00000315249 FAM215AQ9Y5M1 114 aa11.04□□□□□ -0.64
RFFL-201ENST00000315249 IGHV3-73A0A0B4J1V6 119 aa11.04□□□□□ -0.64
RFFL-201ENST00000315249 TRGC2P03986 189 aa11.04□□□□□ -0.64
RFFL-201ENST00000315249 FAM89BQ8N5H3 189 aa11.04□□□□□ -0.64
RFFL-201ENST00000315249 SIGLEC9Q9Y336 463 aa11.04□□□□□ -0.64
RFFL-201ENST00000315249 BIVMQ86UB2 503 aa11.04□□□□□ -0.64
RFFL-201ENST00000315249 LRTM2Q8N967 370 aa11.04□□□□□ -0.64
RFFL-201ENST00000315249 TMEM70Q9BUB7 260 aa11.04□□□□□ -0.64
RFFL-201ENST00000315249 GPR61Q9BZJ8 451 aa11.04□□□□□ -0.64
RFFL-201ENST00000315249 IGHV3-53P01767 116 aa11.04□□□□□ -0.64
RFFL-201ENST00000315249 NR2C2APQ86WQ0 139 aa11.04□□□□□ -0.64
RFFL-201ENST00000315249 ALKBH7Q9BT30 221 aaPredicted RBP11.04□□□□□ -0.64
RFFL-201ENST00000315249 PMS2P5A8MQ11 134 aa11.04□□□□□ -0.64
RFFL-201ENST00000315249 M0R143 59 aa11.04□□□□□ -0.64
RFFL-201ENST00000315249 PLA2G5P39877 138 aa11.04□□□□□ -0.64
RFFL-201ENST00000315249 TRAV3A0A0B4J244 114 aa11.04□□□□□ -0.64
RFFL-201ENST00000315249 UBE2E1P51965 193 aa11.04□□□□□ -0.64
RFFL-201ENST00000315249 ASCL2Q99929 193 aa11.04□□□□□ -0.64
RFFL-201ENST00000315249 IGHV2-70DA0A0C4DH43 119 aa11.03□□□□□ -0.64
RFFL-201ENST00000315249 ASCL4Q6XD76 172 aa11.03□□□□□ -0.64
RFFL-201ENST00000315249 SONP18583 2426 aaKnown RBP11.03□□□□□ -0.64
RFFL-201ENST00000315249 NDUFS7O75251 213 aa11.03□□□□□ -0.64
RFFL-201ENST00000315249 PSG1P11464 419 aa11.03□□□□□ -0.64
RFFL-201ENST00000315249 Q6P435 159 aa11.03□□□□□ -0.64
RFFL-201ENST00000315249 CFAP161Q6P656 301 aa11.03□□□□□ -0.64
RFFL-201ENST00000315249 SPSB3Q6PJ21 355 aa11.03□□□□□ -0.64
RFFL-201ENST00000315249 A0A1B0GUT8 65 aa11.03□□□□□ -0.64
RFFL-201ENST00000315249 MRAPQ8TCY5 172 aa11.03□□□□□ -0.64
RFFL-201ENST00000315249 ACACBO00763 2458 aa11.03□□□□□ -0.64
RFFL-201ENST00000315249 COQ2Q96H96 371 aa11.03□□□□□ -0.64
RFFL-201ENST00000315249 HOXA3O43365 443 aaPredicted RBP11.03□□□□□ -0.64
RFFL-201ENST00000315249 HINT1P49773 126 aaPredicted RBP11.03□□□□□ -0.64
RFFL-201ENST00000315249 IGKV2-40A0A087WW87 121 aaPredicted RBP11.03□□□□□ -0.64
RFFL-201ENST00000315249 IGKV2D-40P01614 121 aaPredicted RBP11.03□□□□□ -0.64
RFFL-201ENST00000315249 OR10J3Q5JRS4 329 aa11.03□□□□□ -0.64
RFFL-201ENST00000315249 PLXNB3Q9ULL4 1909 aa11.02□□□□□ -0.64
RFFL-201ENST00000315249 TGIF2-C20orf24A0A0A6YYL0 155 aa11.02□□□□□ -0.64
RFFL-201ENST00000315249 RNF144BQ7Z419 303 aa11.02□□□□□ -0.64
RFFL-201ENST00000315249 NRGNQ92686 78 aa11.02□□□□□ -0.64
RFFL-201ENST00000315249 CHCHD5Q9BSY4 110 aa11.02□□□□□ -0.64
RFFL-201ENST00000315249 TRGV1A0A0A0MS02 117 aa11.02□□□□□ -0.64
RFFL-201ENST00000315249 TRAV12-3A0A0B4J271 114 aa11.02□□□□□ -0.64
RFFL-201ENST00000315249 HIST1H4GQ99525 98 aa11.02□□□□□ -0.64
RFFL-201ENST00000315249 DEFB113Q30KQ7 82 aa11.02□□□□□ -0.65
RFFL-201ENST00000315249 PRELID3AQ96N28 172 aa11.02□□□□□ -0.65
RFFL-201ENST00000315249 SCRT1Q9BWW7 348 aa11.02□□□□□ -0.65
RFFL-201ENST00000315249 ZNF383Q8NA42 475 aa11.02□□□□□ -0.65
RFFL-201ENST00000315249 TMEM136Q6ZRR5 245 aa11.02□□□□□ -0.65
RFFL-201ENST00000315249 CIARTQ8N365 385 aaPredicted RBP11.02□□□□□ -0.65
RFFL-201ENST00000315249 EML6Q6ZMW3 1958 aa11.02□□□□□ -0.65
RFFL-201ENST00000315249 LOC107984156A0A0G2JMH3 177 aa11.01□□□□□ -0.65
RFFL-201ENST00000315249 DNLZQ5SXM8 178 aa11.01□□□□□ -0.65
RFFL-201ENST00000315249 ARL17AQ8IVW1 177 aa11.01□□□□□ -0.65
RFFL-201ENST00000315249 TMEM183AQ8IXX5 376 aa11.01□□□□□ -0.65
RFFL-201ENST00000315249 RCHY1Q96PM5 261 aa11.01□□□□□ -0.65
RFFL-201ENST00000315249 ZNF581Q9P0T4 197 aa11.01□□□□□ -0.65
RFFL-201ENST00000315249 NPIPB5A8MRT5 1133 aa11.01□□□□□ -0.65
RFFL-201ENST00000315249 RPP21Q9H633 154 aaKnown RBP11.01□□□□□ -0.65
RFFL-201ENST00000315249 TRGV11A0A075B6L2 103 aa11.01□□□□□ -0.65
RFFL-201ENST00000315249 TRAV5A0A0B4J249 113 aa11.01□□□□□ -0.65
RFFL-201ENST00000315249 CBLN1P23435 193 aa11.01□□□□□ -0.65
RFFL-201ENST00000315249 SCGB3A1Q96QR1 104 aa11.01□□□□□ -0.65
RFFL-201ENST00000315249 F11RQ9Y624 299 aaKnown RBP11.01□□□□□ -0.65
RFFL-201ENST00000315249 OVOL1O14753 267 aa11.01□□□□□ -0.65
RFFL-201ENST00000315249 SOD3P08294 240 aa11.01□□□□□ -0.65
RFFL-201ENST00000315249 PRADC1Q9BSG0 188 aa11.01□□□□□ -0.65
RFFL-201ENST00000315249 FAM223BA6NKX1 122 aa11.01□□□□□ -0.65
RFFL-201ENST00000315249 FAM223AQ8IWN6 122 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 84 ms