RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 RAX2Q96IS3 184 aa14.01□□□□□ -0.17
HMGA1-201ENST00000311487 SCRT1Q9BWW7 348 aa14.01□□□□□ -0.17
HMGA1-201ENST00000311487 PARD6GQ9BYG4 376 aaPredicted RBP14.01□□□□□ -0.17
HMGA1-201ENST00000311487 CARHSP1Q9Y2V2 147 aaKnown RBP14.01□□□□□ -0.17
HMGA1-201ENST00000311487 C9JQL5 133 aa14□□□□□ -0.17
HMGA1-201ENST00000311487 PRSS46E5RG02 174 aa14□□□□□ -0.17
HMGA1-201ENST00000311487 F8W036 122 aa14□□□□□ -0.17
HMGA1-201ENST00000311487 LGALS1P09382 135 aaKnown RBP14□□□□□ -0.17
HMGA1-201ENST00000311487 CD69Q07108 199 aa14□□□□□ -0.17
HMGA1-201ENST00000311487 GAMTQ14353 236 aa14□□□□□ -0.17
HMGA1-201ENST00000311487 AKR1C8PQ5T2L2 129 aa14□□□□□ -0.17
HMGA1-201ENST00000311487 ZNF343Q6P1L6 599 aa14□□□□□ -0.17
HMGA1-201ENST00000311487 SLC16A13Q7RTY0 426 aa14□□□□□ -0.17
HMGA1-201ENST00000311487 LINC00518Q8N0U6 118 aa14□□□□□ -0.17
HMGA1-201ENST00000311487 RNASEH2CQ8TDP1 164 aaKnown RBP14□□□□□ -0.17
HMGA1-201ENST00000311487 RSG1Q9BU20 258 aa14□□□□□ -0.17
HMGA1-201ENST00000311487 CHRDL1Q9BU40 450 aa14□□□□□ -0.17
HMGA1-201ENST00000311487 WDR61Q9GZS3 305 aaKnown RBP14□□□□□ -0.17
HMGA1-201ENST00000311487 ANK2Q01484 3957 aa14□□□□□ -0.17
HMGA1-201ENST00000311487 BRI3O95415 125 aa14□□□□□ -0.17
HMGA1-201ENST00000311487 SLURP1P55000 103 aa14□□□□□ -0.17
HMGA1-201ENST00000311487 NDUFA11Q86Y39 141 aa14□□□□□ -0.17
HMGA1-201ENST00000311487 OR10P1Q8NGE3 313 aa14□□□□□ -0.17
HMGA1-201ENST00000311487 SPATA3Q8NHX4 192 aa14□□□□□ -0.17
HMGA1-201ENST00000311487 SEC11CQ9BY50 192 aa14□□□□□ -0.17
HMGA1-201ENST00000311487 CORTO00230 105 aa13.99□□□□□ -0.17
HMGA1-201ENST00000311487 OR2C1O95371 312 aa13.99□□□□□ -0.17
HMGA1-201ENST00000311487 BTN1A1Q13410 526 aa13.99□□□□□ -0.17
HMGA1-201ENST00000311487 GUCA2BQ16661 112 aa13.99□□□□□ -0.17
HMGA1-201ENST00000311487 KLK9Q2XQG4 91 aa13.99□□□□□ -0.17
HMGA1-201ENST00000311487 SPSB3Q6PJ21 355 aa13.99□□□□□ -0.17
HMGA1-201ENST00000311487 PSMG3Q9BT73 122 aaPredicted RBP13.99□□□□□ -0.17
HMGA1-201ENST00000311487 PEF1Q9UBV8 284 aaKnown RBP13.99□□□□□ -0.17
HMGA1-201ENST00000311487 KLK9Q9UKQ9 250 aa13.99□□□□□ -0.17
HMGA1-201ENST00000311487 UBE2L5PA0A1B0GUS4 154 aa13.98□□□□□ -0.17
HMGA1-201ENST00000311487 SFTA3P0C7M3 94 aa13.98□□□□□ -0.17
HMGA1-201ENST00000311487 ARL3P36405 182 aa13.98□□□□□ -0.17
HMGA1-201ENST00000311487 MFAP4P55083 255 aa13.98□□□□□ -0.17
HMGA1-201ENST00000311487 GUK1Q16774 197 aa13.98□□□□□ -0.17
HMGA1-201ENST00000311487 SHISA2Q6UWI4 295 aa13.98□□□□□ -0.17
HMGA1-201ENST00000311487 DPPA3Q6W0C5 159 aa13.98□□□□□ -0.17
HMGA1-201ENST00000311487 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.98□□□□□ -0.17
HMGA1-201ENST00000311487 OR1N2Q8NGR9 330 aa13.98□□□□□ -0.17
HMGA1-201ENST00000311487 VN1R17PQ8TDU5 208 aa13.98□□□□□ -0.17
HMGA1-201ENST00000311487 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.98□□□□□ -0.17
HMGA1-201ENST00000311487 TRBV7-1A0A0A6YYK4 115 aa13.98□□□□□ -0.17
HMGA1-201ENST00000311487 A0A1B0GV50 99 aa13.98□□□□□ -0.17
HMGA1-201ENST00000311487 BMPR1BO00238 502 aa13.98□□□□□ -0.17
HMGA1-201ENST00000311487 GNG7O60262 68 aa13.98□□□□□ -0.17
HMGA1-201ENST00000311487 ATP6V1FQ16864 119 aa13.98□□□□□ -0.17
HMGA1-201ENST00000311487 TMEM147Q9BVK8 224 aa13.98□□□□□ -0.17
HMGA1-201ENST00000311487 CCL24O00175 119 aa13.97□□□□□ -0.17
HMGA1-201ENST00000311487 H2AFB1P0C5Y9 115 aa13.97□□□□□ -0.17
HMGA1-201ENST00000311487 ADMP35318 185 aa13.97□□□□□ -0.17
HMGA1-201ENST00000311487 SVBPQ8N300 66 aa13.97□□□□□ -0.17
HMGA1-201ENST00000311487 NKX6-2Q9C056 277 aaPredicted RBP13.97□□□□□ -0.17
HMGA1-201ENST00000311487 SELENOKQ9Y6D0 94 aa13.97□□□□□ -0.17
HMGA1-201ENST00000311487 PKD1L1Q8TDX9 2849 aa13.97□□□□□ -0.17
HMGA1-201ENST00000311487 IGKV1OR2-108A0A075B7D4 117 aa13.96□□□□□ -0.17
HMGA1-201ENST00000311487 LY86O95711 162 aa13.96□□□□□ -0.17
HMGA1-201ENST00000311487 CTSGP08311 255 aa13.96□□□□□ -0.17
HMGA1-201ENST00000311487 CCL20P78556 96 aa13.96□□□□□ -0.17
HMGA1-201ENST00000311487 TIGITQ495A1 244 aa13.96□□□□□ -0.17
HMGA1-201ENST00000311487 SLC35E1Q96K37 410 aa13.96□□□□□ -0.17
HMGA1-201ENST00000311487 ZNF90Q03938 601 aa13.96□□□□□ -0.18
HMGA1-201ENST00000311487 PEA15Q15121 130 aa13.96□□□□□ -0.18
HMGA1-201ENST00000311487 VWC2Q2TAL6 325 aa13.96□□□□□ -0.18
HMGA1-201ENST00000311487 DPF1Q92782 380 aa13.96□□□□□ -0.18
HMGA1-201ENST00000311487 VSIRQ9H7M9 311 aa13.96□□□□□ -0.18
HMGA1-201ENST00000311487 TGOLN2O43493 480 aa13.95□□□□□ -0.18
HMGA1-201ENST00000311487 HSPB1P04792 205 aaKnown RBP13.95□□□□□ -0.18
HMGA1-201ENST00000311487 HOXD3P31249 432 aaPredicted RBP13.95□□□□□ -0.18
HMGA1-201ENST00000311487 ATP5IP56385 69 aaPredicted RBP13.95□□□□□ -0.18
HMGA1-201ENST00000311487 SERF2P84101 59 aa13.95□□□□□ -0.18
HMGA1-201ENST00000311487 ETFRF1Q6IPR1 90 aa13.95□□□□□ -0.18
HMGA1-201ENST00000311487 OR4X1Q8NH49 305 aa13.95□□□□□ -0.18
HMGA1-201ENST00000311487 EIF5A2Q9GZV4 153 aaKnown RBP13.95□□□□□ -0.18
HMGA1-201ENST00000311487 RPRMQ9NS64 109 aa13.95□□□□□ -0.18
HMGA1-201ENST00000311487 TIMM9Q9Y5J7 89 aa13.95□□□□□ -0.18
HMGA1-201ENST00000311487 ZFP92A6NM28 416 aa13.94□□□□□ -0.18
HMGA1-201ENST00000311487 LINC01619G3V211 115 aa13.94□□□□□ -0.18
HMGA1-201ENST00000311487 CLN5O75503 358 aa13.94□□□□□ -0.18
HMGA1-201ENST00000311487 GATA2P23769 480 aaPredicted RBP13.94□□□□□ -0.18
HMGA1-201ENST00000311487 OR10J1P30954 320 aa13.94□□□□□ -0.18
HMGA1-201ENST00000311487 GPX4P36969 197 aaPredicted RBP13.94□□□□□ -0.18
HMGA1-201ENST00000311487 PBDC1Q9BVG4 233 aa13.94□□□□□ -0.18
HMGA1-201ENST00000311487 ZNF320A2RRD8 509 aa13.94□□□□□ -0.18
HMGA1-201ENST00000311487 PCP4L1A6NKN8 68 aa13.94□□□□□ -0.18
HMGA1-201ENST00000311487 DNASE2O00115 360 aaPredicted RBP13.94□□□□□ -0.18
HMGA1-201ENST00000311487 ZNF207O43670 478 aaKnown RBP13.94□□□□□ -0.18
HMGA1-201ENST00000311487 YIF1AO95070 293 aa13.94□□□□□ -0.18
HMGA1-201ENST00000311487 SCAF4O95104 1147 aaKnown RBP13.94□□□□□ -0.18
HMGA1-201ENST00000311487 PF4P02776 101 aa13.94□□□□□ -0.18
HMGA1-201ENST00000311487 EDN2P20800 178 aa13.94□□□□□ -0.18
HMGA1-201ENST00000311487 NPBWR1P48145 328 aa13.94□□□□□ -0.18
HMGA1-201ENST00000311487 PPT1P50897 306 aa13.94□□□□□ -0.18
HMGA1-201ENST00000311487 SYNJ2BPP57105 145 aa13.94□□□□□ -0.18
HMGA1-201ENST00000311487 RPEL1Q2QD12 228 aa13.94□□□□□ -0.18
HMGA1-201ENST00000311487 TMEM116Q8NCL8 245 aa13.94□□□□□ -0.18
HMGA1-201ENST00000311487 DLX4Q92988 240 aaPredicted RBP13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms