RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 IGKV1D-37A0A075B6S9 117 aa12□□□□□ -0.49
LSM1-201ENST00000311351 A0A0J9YWU9 116 aa12□□□□□ -0.49
LSM1-201ENST00000311351 MPTX1A8MV57 137 aa12□□□□□ -0.49
LSM1-201ENST00000311351 K7EQG2 157 aa12□□□□□ -0.49
LSM1-201ENST00000311351 WRBO00258 174 aa12□□□□□ -0.49
LSM1-201ENST00000311351 RD3LP0DJH9 198 aa12□□□□□ -0.49
LSM1-201ENST00000311351 EWSR1Q01844 656 aaKnown RBP eCLIP12□□□□□ -0.49
LSM1-201ENST00000311351 DHRS2Q13268 280 aa12□□□□□ -0.49
LSM1-201ENST00000311351 GAMTQ14353 236 aa12□□□□□ -0.49
LSM1-201ENST00000311351 LYG2Q86SG7 212 aa12□□□□□ -0.49
LSM1-201ENST00000311351 OR51G1Q8NGK1 321 aa12□□□□□ -0.49
LSM1-201ENST00000311351 RNF183Q96D59 192 aa12□□□□□ -0.49
LSM1-201ENST00000311351 GRAMD2BQ96HH9 432 aa12□□□□□ -0.49
LSM1-201ENST00000311351 ZFP92A6NM28 416 aa11.99□□□□□ -0.49
LSM1-201ENST00000311351 H3BP45 60 aa11.99□□□□□ -0.49
LSM1-201ENST00000311351 LYRM1O43325 122 aa11.99□□□□□ -0.49
LSM1-201ENST00000311351 SYNGR2O43760 224 aa11.99□□□□□ -0.49
LSM1-201ENST00000311351 MED6O75586 246 aa11.99□□□□□ -0.49
LSM1-201ENST00000311351 OR4E1P0C645 316 aa11.99□□□□□ -0.49
LSM1-201ENST00000311351 ZNF688P0C7X2 276 aa11.99□□□□□ -0.49
LSM1-201ENST00000311351 GPX4P36969 197 aaPredicted RBP11.99□□□□□ -0.49
LSM1-201ENST00000311351 ATP5IP56385 69 aaPredicted RBP11.99□□□□□ -0.49
LSM1-201ENST00000311351 RAB11AP62491 216 aa11.99□□□□□ -0.49
LSM1-201ENST00000311351 ZNF90Q03938 601 aa11.99□□□□□ -0.49
LSM1-201ENST00000311351 ZNF846Q147U1 533 aa11.99□□□□□ -0.49
LSM1-201ENST00000311351 C16orf54Q6UWD8 224 aa11.99□□□□□ -0.49
LSM1-201ENST00000311351 DCANP1Q8TF63 244 aa11.99□□□□□ -0.49
LSM1-201ENST00000311351 PBDC1Q9BVG4 233 aa11.99□□□□□ -0.49
LSM1-201ENST00000311351 C4orf46Q504U0 113 aa11.98□□□□□ -0.49
LSM1-201ENST00000311351 RNF125Q96EQ8 232 aa11.98□□□□□ -0.49
LSM1-201ENST00000311351 CIB3Q96Q77 187 aaPredicted RBP11.98□□□□□ -0.49
LSM1-201ENST00000311351 CSTL1Q9H114 145 aa11.98□□□□□ -0.49
LSM1-201ENST00000311351 IGKV1OR2-108A0A075B7D4 117 aa11.97□□□□□ -0.49
LSM1-201ENST00000311351 LCE6AA0A183 80 aa11.97□□□□□ -0.49
LSM1-201ENST00000311351 HELTA6NFD8 242 aa11.97□□□□□ -0.49
LSM1-201ENST00000311351 PRSS46E5RG02 174 aa11.97□□□□□ -0.49
LSM1-201ENST00000311351 PLA2G10O15496 165 aa11.97□□□□□ -0.49
LSM1-201ENST00000311351 MZT2BQ6NZ67 158 aa11.97□□□□□ -0.49
LSM1-201ENST00000311351 COQ8AQ8NI60 647 aa11.97□□□□□ -0.49
LSM1-201ENST00000311351 IL17DQ8TAD2 202 aa11.97□□□□□ -0.49
LSM1-201ENST00000311351 PLECQ15149 4684 aaKnown RBP11.97□□□□□ -0.49
LSM1-201ENST00000311351 ALMS1Q8TCU4 4167 aa11.97□□□□□ -0.49
LSM1-201ENST00000311351 KNCNA6PVL3 124 aa11.96□□□□□ -0.49
LSM1-201ENST00000311351 BUB3O43684 328 aa11.96□□□□□ -0.49
LSM1-201ENST00000311351 CA1P00915 261 aaPredicted RBP11.96□□□□□ -0.49
LSM1-201ENST00000311351 LYZP61626 148 aa11.96□□□□□ -0.49
LSM1-201ENST00000311351 POLR2GP62487 172 aaKnown RBP eCLIP11.96□□□□□ -0.49
LSM1-201ENST00000311351 OR2F1Q13607 317 aa11.96□□□□□ -0.49
LSM1-201ENST00000311351 PMS2P11Q13670 270 aa11.96□□□□□ -0.49
LSM1-201ENST00000311351 SPANXN5Q5MJ07 72 aa11.96□□□□□ -0.49
LSM1-201ENST00000311351 OR4D5Q8NGN0 318 aa11.96□□□□□ -0.49
LSM1-201ENST00000311351 C20orf85Q9H1P6 137 aa11.96□□□□□ -0.49
LSM1-201ENST00000311351 EIF2B2P49770 351 aaKnown RBP11.95□□□□□ -0.5
LSM1-201ENST00000311351 SIGLEC15Q6ZMC9 328 aa11.95□□□□□ -0.5
LSM1-201ENST00000311351 ACOT7LQ6ZUV0 252 aa11.95□□□□□ -0.5
LSM1-201ENST00000311351 STHQ8IWL8 128 aa11.95□□□□□ -0.5
LSM1-201ENST00000311351 THAP8Q8NA92 274 aa11.95□□□□□ -0.5
LSM1-201ENST00000311351 DNAH1Q9P2D7 4330 aa11.95□□□□□ -0.5
LSM1-201ENST00000311351 HYDINQ4G0P3 5121 aa11.94□□□□□ -0.5
LSM1-201ENST00000311351 SSSCA1O60232 199 aa11.94□□□□□ -0.5
LSM1-201ENST00000311351 SCGB1D2O95969 90 aa11.94□□□□□ -0.5
LSM1-201ENST00000311351 IFNA21P01568 189 aa11.94□□□□□ -0.5
LSM1-201ENST00000311351 NKX2-1P43699 371 aaPredicted RBP11.94□□□□□ -0.5
LSM1-201ENST00000311351 RPP30P78346 268 aaKnown RBP11.94□□□□□ -0.5
LSM1-201ENST00000311351 ID3Q02535 119 aa11.94□□□□□ -0.5
LSM1-201ENST00000311351 PSMG4Q5JS54 123 aa11.94□□□□□ -0.5
LSM1-201ENST00000311351 OR8G2PQ6IF36 304 aa11.94□□□□□ -0.5
LSM1-201ENST00000311351 TRPT1Q86TN4 253 aaKnown RBP11.94□□□□□ -0.5
LSM1-201ENST00000311351 TRGV9Q99603 122 aa11.94□□□□□ -0.5
LSM1-201ENST00000311351 NRN1Q9NPD7 142 aa11.94□□□□□ -0.5
LSM1-201ENST00000311351 STRAPQ9Y3F4 350 aaKnown RBP11.94□□□□□ -0.5
LSM1-201ENST00000311351 FAM240BA0A1B0GVZ2 78 aa11.93□□□□□ -0.5
LSM1-201ENST00000311351 LCE2BO14633 110 aa11.93□□□□□ -0.5
LSM1-201ENST00000311351 UPK1BO75841 260 aa11.93□□□□□ -0.5
LSM1-201ENST00000311351 TCRBP04435 133 aa11.93□□□□□ -0.5
LSM1-201ENST00000311351 ASAH1Q13510 395 aa11.93□□□□□ -0.5
LSM1-201ENST00000311351 IAH1Q2TAA2 248 aaPredicted RBP11.93□□□□□ -0.5
LSM1-201ENST00000311351 ACTL10Q5JWF8 245 aa11.93□□□□□ -0.5
LSM1-201ENST00000311351 GSG1LQ6UXU4 331 aa11.93□□□□□ -0.5
LSM1-201ENST00000311351 MITD1Q8WV92 249 aa11.93□□□□□ -0.5
LSM1-201ENST00000311351 TRAV6A0A075B6T7 132 aa11.92□□□□□ -0.5
LSM1-201ENST00000311351 CXorf65A6NEN9 183 aa11.92□□□□□ -0.5
LSM1-201ENST00000311351 CCSO14618 274 aa11.92□□□□□ -0.5
LSM1-201ENST00000311351 CCNKO75909 580 aa11.92□□□□□ -0.5
LSM1-201ENST00000311351 FABP1P07148 127 aa11.92□□□□□ -0.5
LSM1-201ENST00000311351 C4BPBP20851 252 aa11.92□□□□□ -0.5
LSM1-201ENST00000311351 NUP62P37198 522 aaPredicted RBP11.92□□□□□ -0.5
LSM1-201ENST00000311351 AP2S1P53680 142 aaPredicted RBP11.92□□□□□ -0.5
LSM1-201ENST00000311351 AKR1C1Q04828 323 aa11.92□□□□□ -0.5
LSM1-201ENST00000311351 ZBTB8BQ8NAP8 495 aaPredicted RBP11.92□□□□□ -0.5
LSM1-201ENST00000311351 GATAD1Q8WUU5 269 aa11.92□□□□□ -0.5
LSM1-201ENST00000311351 RARRES2Q99969 163 aa11.92□□□□□ -0.5
LSM1-201ENST00000311351 NUDT15Q9NV35 164 aa11.92□□□□□ -0.5
LSM1-201ENST00000311351 PSENENQ9NZ42 101 aa11.92□□□□□ -0.5
LSM1-201ENST00000311351 GIG44P09565 113 aaPredicted RBP11.91□□□□□ -0.5
LSM1-201ENST00000311351 GATA2P23769 480 aaPredicted RBP11.91□□□□□ -0.5
LSM1-201ENST00000311351 TMEM182Q6ZP80 229 aaPredicted RBP11.91□□□□□ -0.5
LSM1-201ENST00000311351 OR11H2Q8NH07 326 aa11.91□□□□□ -0.5
LSM1-201ENST00000311351 ENKURQ8TC29 256 aa11.91□□□□□ -0.5
LSM1-201ENST00000311351 PPP1R14BQ96C90 147 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 254 ms