RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 TEX43Q6ZNM6 134 aa11.56□□□□□ -0.56
CSPG4-201ENST00000308508 GGTLC1Q9BX51 225 aa11.56□□□□□ -0.56
CSPG4-201ENST00000308508 WNK3Q9BYP7 1800 aa11.56□□□□□ -0.56
CSPG4-201ENST00000308508 SYS1-DBNDD2H3BUS1 97 aa11.56□□□□□ -0.56
CSPG4-201ENST00000308508 GTF3AQ92664 365 aaKnown RBP11.56□□□□□ -0.56
CSPG4-201ENST00000308508 AGMATQ9BSE5 352 aa11.56□□□□□ -0.56
CSPG4-201ENST00000308508 PATE3B3GLJ2 98 aa11.56□□□□□ -0.56
CSPG4-201ENST00000308508 PRCDQ00LT1 54 aa11.56□□□□□ -0.56
CSPG4-201ENST00000308508 MESP2Q0VG99 397 aa11.56□□□□□ -0.56
CSPG4-201ENST00000308508 IGLV3-21P80748 117 aaPredicted RBP11.56□□□□□ -0.56
CSPG4-201ENST00000308508 C1orf122Q6ZSJ8 110 aa11.56□□□□□ -0.56
CSPG4-201ENST00000308508 CHCHD5Q9BSY4 110 aa11.56□□□□□ -0.56
CSPG4-201ENST00000308508 TMEM8BA6NDV4 472 aa11.55□□□□□ -0.56
CSPG4-201ENST00000308508 IQCF6A8MYZ5 107 aa11.55□□□□□ -0.56
CSPG4-201ENST00000308508 EIF4EBP2Q13542 120 aaPredicted RBP11.55□□□□□ -0.56
CSPG4-201ENST00000308508 CDCP2Q5VXM1 449 aa11.55□□□□□ -0.56
CSPG4-201ENST00000308508 GLRX5Q86SX6 157 aa11.55□□□□□ -0.56
CSPG4-201ENST00000308508 C4orf51C9J302 202 aa11.55□□□□□ -0.56
CSPG4-201ENST00000308508 RASL10AQ92737 203 aa11.55□□□□□ -0.56
CSPG4-201ENST00000308508 FBLN5Q9UBX5 448 aa11.55□□□□□ -0.56
CSPG4-201ENST00000308508 PCOLCEQ15113 449 aa11.55□□□□□ -0.56
CSPG4-201ENST00000308508 SLC25A39Q9BZJ4 359 aaPredicted RBP11.55□□□□□ -0.56
CSPG4-201ENST00000308508 TRAV8-3A0A0A6YYJ7 113 aa11.55□□□□□ -0.56
CSPG4-201ENST00000308508 IL9P15248 144 aa11.55□□□□□ -0.56
CSPG4-201ENST00000308508 SIGLEC15Q6ZMC9 328 aa11.55□□□□□ -0.56
CSPG4-201ENST00000308508 CECR9P0C854 216 aa11.55□□□□□ -0.56
CSPG4-201ENST00000308508 MORN2Q502X0 79 aa11.55□□□□□ -0.56
CSPG4-201ENST00000308508 DPH3P1Q9H4G8 78 aa11.55□□□□□ -0.56
CSPG4-201ENST00000308508 PPIFP30405 207 aaKnown RBP11.54□□□□□ -0.56
CSPG4-201ENST00000308508 ID3Q02535 119 aa11.54□□□□□ -0.56
CSPG4-201ENST00000308508 NPIPB5A8MRT5 1133 aa11.54□□□□□ -0.56
CSPG4-201ENST00000308508 GREM1O60565 184 aa11.54□□□□□ -0.56
CSPG4-201ENST00000308508 PSG3Q16557 428 aa11.54□□□□□ -0.56
CSPG4-201ENST00000308508 ARFGEF3Q5TH69 2177 aa11.54□□□□□ -0.56
CSPG4-201ENST00000308508 WFDC1Q9HC57 220 aa11.54□□□□□ -0.56
CSPG4-201ENST00000308508 FAM166AQ6J272 317 aa11.54□□□□□ -0.56
CSPG4-201ENST00000308508 PRADC1Q9BSG0 188 aa11.54□□□□□ -0.56
CSPG4-201ENST00000308508 FAM216BQ8N7L0 139 aa11.54□□□□□ -0.56
CSPG4-201ENST00000308508 H3BMM0 161 aa11.53□□□□□ -0.56
CSPG4-201ENST00000308508 LINC01551Q86U37 167 aa11.53□□□□□ -0.56
CSPG4-201ENST00000308508 UBE2WQ96B02 151 aa11.53□□□□□ -0.56
CSPG4-201ENST00000308508 CASP8AP2Q9UKL3 1982 aa11.53□□□□□ -0.56
CSPG4-201ENST00000308508 DMRTC2Q8IXT2 367 aaPredicted RBP11.53□□□□□ -0.56
CSPG4-201ENST00000308508 C9JAW5 83 aa11.53□□□□□ -0.56
CSPG4-201ENST00000308508 INAFM2P0DMQ5 153 aa11.53□□□□□ -0.56
CSPG4-201ENST00000308508 LY96Q9Y6Y9 160 aa11.53□□□□□ -0.56
CSPG4-201ENST00000308508 RPL32P62910 135 aaKnown RBP11.53□□□□□ -0.56
CSPG4-201ENST00000308508 IGHV2OR16-5A0A0B4J2B6 119 aa11.53□□□□□ -0.56
CSPG4-201ENST00000308508 IGKV1D-13A0A0B4J2D9 117 aa11.53□□□□□ -0.56
CSPG4-201ENST00000308508 IGKV1-13P0DP09 117 aa11.53□□□□□ -0.56
CSPG4-201ENST00000308508 SRSF7Q16629 238 aaKnown RBP eCLIP11.53□□□□□ -0.56
CSPG4-201ENST00000308508 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.53□□□□□ -0.56
CSPG4-201ENST00000308508 H0YIZ8 118 aa11.53□□□□□ -0.56
CSPG4-201ENST00000308508 VCYO14598 125 aa11.53□□□□□ -0.56
CSPG4-201ENST00000308508 NYNRINQ9P2P1 1898 aaKnown RBP11.53□□□□□ -0.56
CSPG4-201ENST00000308508 MYMXA0A1B0GTQ4 84 aa11.52□□□□□ -0.56
CSPG4-201ENST00000308508 TRBV20-1A0A075B6N2 111 aa11.52□□□□□ -0.56
CSPG4-201ENST00000308508 PYY3Q5JQD4 70 aa11.52□□□□□ -0.57
CSPG4-201ENST00000308508 MRAPQ8TCY5 172 aa11.52□□□□□ -0.57
CSPG4-201ENST00000308508 SSC4DQ8WTU2 575 aa11.52□□□□□ -0.57
CSPG4-201ENST00000308508 BSPH1Q075Z2 132 aa11.52□□□□□ -0.57
CSPG4-201ENST00000308508 RBMY1FQ15415 496 aaKnown RBP11.52□□□□□ -0.57
CSPG4-201ENST00000308508 NUP35Q8NFH5 326 aa11.52□□□□□ -0.57
CSPG4-201ENST00000308508 SPANXCQ9NY87 97 aa11.52□□□□□ -0.57
CSPG4-201ENST00000308508 C3orf79P0CE67 100 aa11.52□□□□□ -0.57
CSPG4-201ENST00000308508 NDUFS6O75380 124 aaKnown RBP11.52□□□□□ -0.57
CSPG4-201ENST00000308508 CHAC1Q9BUX1 264 aa11.52□□□□□ -0.57
CSPG4-201ENST00000308508 WDR83OSQ9Y284 106 aa11.52□□□□□ -0.57
CSPG4-201ENST00000308508 ZDBF2Q9HCK1 2354 aa11.52□□□□□ -0.57
CSPG4-201ENST00000308508 CHCHD2Q9Y6H1 151 aaPredicted RBP11.51□□□□□ -0.57
CSPG4-201ENST00000308508 VDAC2P45880 294 aaPredicted RBP11.51□□□□□ -0.57
CSPG4-201ENST00000308508 PSG7Q13046 419 aa11.51□□□□□ -0.57
CSPG4-201ENST00000308508 HOXD3P31249 432 aaPredicted RBP11.51□□□□□ -0.57
CSPG4-201ENST00000308508 SLC25A28Q96A46 364 aa11.51□□□□□ -0.57
CSPG4-201ENST00000308508 NCR2O95944 276 aa11.51□□□□□ -0.57
CSPG4-201ENST00000308508 LOC285556D6RIA3 1793 aa11.51□□□□□ -0.57
CSPG4-201ENST00000308508 IGHV3-11P01762 117 aa11.51□□□□□ -0.57
CSPG4-201ENST00000308508 IFITM1P13164 125 aa11.51□□□□□ -0.57
CSPG4-201ENST00000308508 SELLP14151 372 aa11.51□□□□□ -0.57
CSPG4-201ENST00000308508 TMEM256Q8N2U0 113 aa11.51□□□□□ -0.57
CSPG4-201ENST00000308508 SLC25A45Q8N413 288 aa11.51□□□□□ -0.57
CSPG4-201ENST00000308508 DUTP33316 252 aaKnown RBP11.51□□□□□ -0.57
CSPG4-201ENST00000308508 TREML4Q6UXN2 200 aa11.51□□□□□ -0.57
CSPG4-201ENST00000308508 IMMP1LQ96LU5 166 aa11.51□□□□□ -0.57
CSPG4-201ENST00000308508 TMEM133Q9H2Q1 129 aa11.51□□□□□ -0.57
CSPG4-201ENST00000308508 TFF2Q03403 129 aa11.5□□□□□ -0.57
CSPG4-201ENST00000308508 PAX8Q06710 450 aa11.5□□□□□ -0.57
CSPG4-201ENST00000308508 FAM168AQ92567 244 aa11.5□□□□□ -0.57
CSPG4-201ENST00000308508 ANK1P16157 1881 aa11.5□□□□□ -0.57
CSPG4-201ENST00000308508 SMAD7O15105 426 aaKnown RBP11.5□□□□□ -0.57
CSPG4-201ENST00000308508 ZNF664Q8N3J9 261 aa11.5□□□□□ -0.57
CSPG4-201ENST00000308508 INS-IGF2F8WCM5 200 aa11.5□□□□□ -0.57
CSPG4-201ENST00000308508 INSP01308 110 aa11.5□□□□□ -0.57
CSPG4-201ENST00000308508 STPG1Q5TH74 334 aa11.5□□□□□ -0.57
CSPG4-201ENST00000308508 LCN12Q6JVE5 192 aa11.5□□□□□ -0.57
CSPG4-201ENST00000308508 COLCA1Q6ZS62 124 aa11.5□□□□□ -0.57
CSPG4-201ENST00000308508 TIMM21Q9BVV7 248 aa11.5□□□□□ -0.57
CSPG4-201ENST00000308508 ABCA7Q8IZY2 2146 aa11.5□□□□□ -0.57
CSPG4-201ENST00000308508 TRACP01848 142 aa11.5□□□□□ -0.57
CSPG4-201ENST00000308508 ZNF319Q9P2F9 582 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms