RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 PVRIGQ6DKI7 326 aa15.87■□□□□ 0.13
USP48-201ENST00000308271 COL4A6Q14031 1691 aa15.87■□□□□ 0.13
USP48-201ENST00000308271 ZNF114Q8NC26 417 aa15.87■□□□□ 0.13
USP48-201ENST00000308271 A0A087X0K7 114 aa15.87■□□□□ 0.13
USP48-201ENST00000308271 CDX4O14627 284 aaPredicted RBP15.87■□□□□ 0.13
USP48-201ENST00000308271 TCRAP04437 139 aa15.87■□□□□ 0.13
USP48-201ENST00000308271 LEPP41159 167 aa15.87■□□□□ 0.13
USP48-201ENST00000308271 CENPVQ7Z7K6 275 aaPredicted RBP15.87■□□□□ 0.13
USP48-201ENST00000308271 SIGMAR1Q99720 223 aa15.87■□□□□ 0.13
USP48-201ENST00000308271 LGALS3P17931 250 aaKnown RBP15.87■□□□□ 0.13
USP48-201ENST00000308271 H7C2G1 150 aa15.86■□□□□ 0.13
USP48-201ENST00000308271 Q8NFD4 153 aa15.86■□□□□ 0.13
USP48-201ENST00000308271 CYYR1Q96J86 154 aa15.86■□□□□ 0.13
USP48-201ENST00000308271 GAGE12BA1L429 117 aa15.86■□□□□ 0.13
USP48-201ENST00000308271 DLX6P56179 175 aa15.86■□□□□ 0.13
USP48-201ENST00000308271 CUL9Q8IWT3 2517 aa15.86■□□□□ 0.13
USP48-201ENST00000308271 A0A0G2JLM5 398 aa15.86■□□□□ 0.13
USP48-201ENST00000308271 MLNRO43193 412 aa15.86■□□□□ 0.13
USP48-201ENST00000308271 PSG1P11464 419 aa15.86■□□□□ 0.13
USP48-201ENST00000308271 ID1P41134 155 aa15.86■□□□□ 0.13
USP48-201ENST00000308271 ERVK11-1P61568 191 aa15.86■□□□□ 0.13
USP48-201ENST00000308271 C21orf62Q9NYP8 219 aa15.86■□□□□ 0.13
USP48-201ENST00000308271 ZNF256Q9Y2P7 627 aaPredicted RBP15.86■□□□□ 0.13
USP48-201ENST00000308271 ITGB1BP1O14713 200 aa15.85■□□□□ 0.13
USP48-201ENST00000308271 PDLIM4P50479 330 aa15.85■□□□□ 0.13
USP48-201ENST00000308271 SCRT1Q9BWW7 348 aa15.85■□□□□ 0.13
USP48-201ENST00000308271 V9GYV3 84 aa15.85■□□□□ 0.13
USP48-201ENST00000308271 COL4A3Q01955 1670 aa15.85■□□□□ 0.13
USP48-201ENST00000308271 IGHV1-18A0A0C4DH31 117 aa15.85■□□□□ 0.13
USP48-201ENST00000308271 TMEM249Q2WGJ8 235 aa15.85■□□□□ 0.13
USP48-201ENST00000308271 SAMD5Q5TGI4 173 aa15.85■□□□□ 0.13
USP48-201ENST00000308271 DPF1Q92782 380 aa15.85■□□□□ 0.13
USP48-201ENST00000308271 DPM2O94777 84 aa15.85■□□□□ 0.13
USP48-201ENST00000308271 RPL15P61313 204 aaKnown RBP15.85■□□□□ 0.13
USP48-201ENST00000308271 SPRR3Q9UBC9 169 aa15.85■□□□□ 0.13
USP48-201ENST00000308271 ROS1P08922 2347 aa15.85■□□□□ 0.13
USP48-201ENST00000308271 FABP5P3A8MUU1 101 aa15.85■□□□□ 0.13
USP48-201ENST00000308271 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP15.85■□□□□ 0.13
USP48-201ENST00000308271 LMO1P25800 156 aa15.85■□□□□ 0.13
USP48-201ENST00000308271 TTC32Q5I0X7 151 aa15.85■□□□□ 0.13
USP48-201ENST00000308271 RNF125Q96EQ8 232 aa15.85■□□□□ 0.13
USP48-201ENST00000308271 GUSBP1Q15486 140 aa15.84■□□□□ 0.13
USP48-201ENST00000308271 PPP1R27Q86WC6 154 aa15.84■□□□□ 0.13
USP48-201ENST00000308271 RPRMLQ8N4K4 120 aa15.84■□□□□ 0.13
USP48-201ENST00000308271 C11orf52Q96A22 123 aa15.84■□□□□ 0.13
USP48-201ENST00000308271 LINC01559Q495D7 138 aa15.84■□□□□ 0.13
USP48-201ENST00000308271 SCGB3A1Q96QR1 104 aa15.84■□□□□ 0.13
USP48-201ENST00000308271 C17orf100A8MU93 164 aa15.84■□□□□ 0.13
USP48-201ENST00000308271 PPP1R17O96001 155 aa15.84■□□□□ 0.13
USP48-201ENST00000308271 SELLP14151 372 aa15.84■□□□□ 0.13
USP48-201ENST00000308271 TPTE2P1Q5T6R2 138 aa15.84■□□□□ 0.13
USP48-201ENST00000308271 FAM53AQ6NSI3 398 aaPredicted RBP15.84■□□□□ 0.13
USP48-201ENST00000308271 DOCK7Q96N67 2140 aa15.84■□□□□ 0.13
USP48-201ENST00000308271 NPPCP23582 126 aa15.84■□□□□ 0.13
USP48-201ENST00000308271 KIR2DL4Q99706 377 aa15.84■□□□□ 0.13
USP48-201ENST00000308271 VCX2Q9H322 139 aa15.84■□□□□ 0.13
USP48-201ENST00000308271 DPM3Q9P2X0 92 aa15.84■□□□□ 0.13
USP48-201ENST00000308271 FER1L5A0AVI2 2057 aa15.83■□□□□ 0.13
USP48-201ENST00000308271 LOXL3P58215 753 aa15.83■□□□□ 0.13
USP48-201ENST00000308271 FAM27E3Q08E93 113 aa15.83■□□□□ 0.13
USP48-201ENST00000308271 Q0VFX4 171 aa15.83■□□□□ 0.13
USP48-201ENST00000308271 C10orf55Q5SWW7 151 aa15.83■□□□□ 0.13
USP48-201ENST00000308271 TMEM167AQ8TBQ9 72 aa15.83■□□□□ 0.13
USP48-201ENST00000308271 SPOCK3Q9BQ16 436 aa15.83■□□□□ 0.13
USP48-201ENST00000308271 C9orf172C9J069 976 aa15.83■□□□□ 0.12
USP48-201ENST00000308271 TRGV9Q99603 122 aa15.83■□□□□ 0.12
USP48-201ENST00000308271 IGHV3-35A0A0C4DH35 117 aa15.83■□□□□ 0.12
USP48-201ENST00000308271 UNQ6494/PRO21346Q6UXR6 183 aa15.83■□□□□ 0.12
USP48-201ENST00000308271 MYO7BQ6PIF6 2116 aa15.82■□□□□ 0.12
USP48-201ENST00000308271 RNASE2P10153 161 aaKnown RBP15.82■□□□□ 0.12
USP48-201ENST00000308271 VDAC2P45880 294 aaPredicted RBP15.82■□□□□ 0.12
USP48-201ENST00000308271 Q6ZSR3 168 aa15.82■□□□□ 0.12
USP48-201ENST00000308271 RAXQ9Y2V3 346 aa15.82■□□□□ 0.12
USP48-201ENST00000308271 SMPXQ9UHP9 88 aa15.82■□□□□ 0.12
USP48-201ENST00000308271 MYOD1P15172 320 aa15.82■□□□□ 0.12
USP48-201ENST00000308271 OCIAD2Q56VL3 154 aa15.82■□□□□ 0.12
USP48-201ENST00000308271 LINC00479Q96M42 142 aa15.82■□□□□ 0.12
USP48-201ENST00000308271 CST9LQ9H4G1 147 aa15.82■□□□□ 0.12
USP48-201ENST00000308271 DENND4AQ7Z401 1863 aa15.81■□□□□ 0.12
USP48-201ENST00000308271 ZNF479Q96JC4 524 aa15.81■□□□□ 0.12
USP48-201ENST00000308271 ZNF329Q86UD4 541 aa15.81■□□□□ 0.12
USP48-201ENST00000308271 ASCL2Q99929 193 aa15.81■□□□□ 0.12
USP48-201ENST00000308271 S4R3C0 116 aa15.81■□□□□ 0.12
USP48-201ENST00000308271 B9A039 149 aa15.81■□□□□ 0.12
USP48-201ENST00000308271 PRSS2P07478 247 aa15.81■□□□□ 0.12
USP48-201ENST00000308271 SYT8Q8NBV8 401 aa15.81■□□□□ 0.12
USP48-201ENST00000308271 TOMM40O96008 361 aa15.8■□□□□ 0.12
USP48-201ENST00000308271 IGKCP01834 107 aa15.8■□□□□ 0.12
USP48-201ENST00000308271 ZNF418Q8TF45 676 aaPredicted RBP15.8■□□□□ 0.12
USP48-201ENST00000308271 COL4A4P53420 1690 aaPredicted RBP15.8■□□□□ 0.12
USP48-201ENST00000308271 DMRTC2Q8IXT2 367 aaPredicted RBP15.8■□□□□ 0.12
USP48-201ENST00000308271 GFRA4Q9GZZ7 299 aa15.8■□□□□ 0.12
USP48-201ENST00000308271 ZNF106Q9H2Y7 1883 aaKnown RBP15.8■□□□□ 0.12
USP48-201ENST00000308271 TMEM133Q9H2Q1 129 aa15.8■□□□□ 0.12
USP48-201ENST00000308271 STPG4Q8N801 248 aa15.8■□□□□ 0.12
USP48-201ENST00000308271 PROK2Q9HC23 129 aa15.8■□□□□ 0.12
USP48-201ENST00000308271 FTH1P19P0C7X4 201 aa15.79■□□□□ 0.12
USP48-201ENST00000308271 FAM231DQ6ZW35 169 aa15.79■□□□□ 0.12
USP48-201ENST00000308271 NAA38Q9BRA0 125 aaKnown RBP15.79■□□□□ 0.12
USP48-201ENST00000308271 HEATR1Q9H583 2144 aaKnown RBP15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms