RNA–Protein interactions for RNA: ENST00000306726.6

PTPN9-201, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PTPN9, Length 3,862 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-201ENST00000306726 RNF7Q9UBF6 113 aa11.86□□□□□ -0.51
PTPN9-201ENST00000306726 VDAC2P45880 294 aaPredicted RBP11.86□□□□□ -0.51
PTPN9-201ENST00000306726 NUP35Q8NFH5 326 aa11.86□□□□□ -0.51
PTPN9-201ENST00000306726 DSCAMO60469 2012 aa11.86□□□□□ -0.51
PTPN9-201ENST00000306726 TMEM144Q7Z5S9 345 aa11.86□□□□□ -0.51
PTPN9-201ENST00000306726 NIT1Q86X76 327 aa11.86□□□□□ -0.51
PTPN9-201ENST00000306726 C22orf15Q8WYQ4 148 aa11.86□□□□□ -0.51
PTPN9-201ENST00000306726 TNFRSF19Q9NS68 423 aa11.86□□□□□ -0.51
PTPN9-201ENST00000306726 SLC25A10Q9UBX3 287 aaPredicted RBP11.86□□□□□ -0.51
PTPN9-201ENST00000306726 CCL25O15444 150 aa11.86□□□□□ -0.51
PTPN9-201ENST00000306726 HLA-DQA1P01909 254 aa11.86□□□□□ -0.51
PTPN9-201ENST00000306726 VWC2Q2TAL6 325 aa11.86□□□□□ -0.51
PTPN9-201ENST00000306726 TMEM136Q6ZRR5 245 aa11.86□□□□□ -0.51
PTPN9-201ENST00000306726 SRSF12Q8WXF0 261 aaKnown RBP11.86□□□□□ -0.51
PTPN9-201ENST00000306726 LRBAP50851 2863 aa11.85□□□□□ -0.51
PTPN9-201ENST00000306726 IGLL1P15814 213 aa11.85□□□□□ -0.51
PTPN9-201ENST00000306726 IGHV3-49A0A0A0MS15 119 aa11.85□□□□□ -0.51
PTPN9-201ENST00000306726 TYMSP04818 313 aa11.85□□□□□ -0.51
PTPN9-201ENST00000306726 COA6Q5JTJ3 125 aaKnown RBP11.85□□□□□ -0.51
PTPN9-201ENST00000306726 SLC25A33Q9BSK2 321 aa11.85□□□□□ -0.51
PTPN9-201ENST00000306726 PRNDQ9UKY0 176 aa11.85□□□□□ -0.51
PTPN9-201ENST00000306726 C15orf65H3BRN8 121 aa11.85□□□□□ -0.51
PTPN9-201ENST00000306726 LY6HO94772 140 aa11.85□□□□□ -0.51
PTPN9-201ENST00000306726 RIPPLY3P57055 190 aa11.85□□□□□ -0.51
PTPN9-201ENST00000306726 WDR31Q8NA23 367 aa11.85□□□□□ -0.51
PTPN9-201ENST00000306726 ALKBH7Q9BT30 221 aaPredicted RBP11.85□□□□□ -0.51
PTPN9-201ENST00000306726 JPT1Q9UK76 154 aa11.85□□□□□ -0.51
PTPN9-201ENST00000306726 CENPEQ02224 2701 aa11.85□□□□□ -0.51
PTPN9-201ENST00000306726 PTPRQQ9UMZ3 2332 aa11.84□□□□□ -0.51
PTPN9-201ENST00000306726 IGLC2P0DOY2 106 aa11.84□□□□□ -0.51
PTPN9-201ENST00000306726 IGLC3P0DOY3 106 aa11.84□□□□□ -0.51
PTPN9-201ENST00000306726 NMUP48645 174 aa11.84□□□□□ -0.51
PTPN9-201ENST00000306726 SRSF7Q16629 238 aaKnown RBP eCLIP11.84□□□□□ -0.51
PTPN9-201ENST00000306726 C18orf32Q8TCD1 76 aa11.84□□□□□ -0.51
PTPN9-201ENST00000306726 WNK1Q9H4A3 2382 aa11.84□□□□□ -0.51
PTPN9-201ENST00000306726 OR2T8A6NH00 312 aa11.84□□□□□ -0.51
PTPN9-201ENST00000306726 PEX7O00628 323 aa11.84□□□□□ -0.51
PTPN9-201ENST00000306726 CNTFRP26992 372 aa11.84□□□□□ -0.51
PTPN9-201ENST00000306726 PPIFP30405 207 aaKnown RBP11.84□□□□□ -0.51
PTPN9-201ENST00000306726 TSPOP30536 169 aa11.84□□□□□ -0.51
PTPN9-201ENST00000306726 CX3CL1P78423 397 aa11.84□□□□□ -0.51
PTPN9-201ENST00000306726 Q71RC1 249 aaPredicted RBP11.84□□□□□ -0.51
PTPN9-201ENST00000306726 TEX45Q8NA69 505 aa11.84□□□□□ -0.51
PTPN9-201ENST00000306726 CHRDL1Q9BU40 450 aa11.84□□□□□ -0.51
PTPN9-201ENST00000306726 SVEP1Q4LDE5 3571 aa11.84□□□□□ -0.51
PTPN9-201ENST00000306726 KIR2DL5BA0A0G2JN68 375 aa11.84□□□□□ -0.51
PTPN9-201ENST00000306726 KIR2DL5BA0A0G2JPC4 375 aa11.84□□□□□ -0.51
PTPN9-201ENST00000306726 K7EMI3 77 aa11.84□□□□□ -0.51
PTPN9-201ENST00000306726 BPIFB3P59826 476 aa11.84□□□□□ -0.51
PTPN9-201ENST00000306726 AMMECR1LQ6DCA0 310 aa11.84□□□□□ -0.51
PTPN9-201ENST00000306726 KIR2DL5AQ8N109 375 aa11.84□□□□□ -0.51
PTPN9-201ENST00000306726 OR1L8Q8NGR8 309 aa11.84□□□□□ -0.51
PTPN9-201ENST00000306726 MRPL36Q9P0J6 103 aaKnown RBP11.84□□□□□ -0.51
PTPN9-201ENST00000306726 USP9YO00507 2555 aaPredicted RBP11.83□□□□□ -0.52
PTPN9-201ENST00000306726 IGKV3-7A0A075B6H7 116 aa11.83□□□□□ -0.52
PTPN9-201ENST00000306726 KBTBD11-OT1A0A1B0GTJ5 212 aa11.83□□□□□ -0.52
PTPN9-201ENST00000306726 NRN1LQ496H8 165 aa11.83□□□□□ -0.52
PTPN9-201ENST00000306726 EBLN2Q6P2I7 272 aa11.83□□□□□ -0.52
PTPN9-201ENST00000306726 SPENQ96T58 3664 aaKnown RBP11.83□□□□□ -0.52
PTPN9-201ENST00000306726 PSG1P11464 419 aa11.83□□□□□ -0.52
PTPN9-201ENST00000306726 TNRC6AQ8NDV7 1962 aaKnown RBP11.82□□□□□ -0.52
PTPN9-201ENST00000306726 IGHV3-66A0A0C4DH42 116 aa11.82□□□□□ -0.52
PTPN9-201ENST00000306726 NBEAP1P0C6P0 100 aa11.82□□□□□ -0.52
PTPN9-201ENST00000306726 CT45A6P0DMU7 189 aa11.82□□□□□ -0.52
PTPN9-201ENST00000306726 CT45A5P0DMU8 189 aa11.82□□□□□ -0.52
PTPN9-201ENST00000306726 CT45A7P0DMV0 189 aa11.82□□□□□ -0.52
PTPN9-201ENST00000306726 AREGP15514 252 aa11.82□□□□□ -0.52
PTPN9-201ENST00000306726 BTF3P20290 206 aaKnown RBP11.82□□□□□ -0.52
PTPN9-201ENST00000306726 PDLIM4P50479 330 aa11.82□□□□□ -0.52
PTPN9-201ENST00000306726 FA2HQ7L5A8 372 aa11.82□□□□□ -0.52
PTPN9-201ENST00000306726 FNDC4Q9H6D8 234 aaPredicted RBP11.82□□□□□ -0.52
PTPN9-201ENST00000306726 FAM181BA6NEQ2 426 aa11.82□□□□□ -0.52
PTPN9-201ENST00000306726 NPIPB11E5RHQ5 1161 aa11.82□□□□□ -0.52
PTPN9-201ENST00000306726 M0R3E3 92 aa11.82□□□□□ -0.52
PTPN9-201ENST00000306726 PRRX1P54821 245 aa11.82□□□□□ -0.52
PTPN9-201ENST00000306726 YPEL3P61236 119 aaPredicted RBP11.82□□□□□ -0.52
PTPN9-201ENST00000306726 C22orf34Q6ZV56 151 aa11.82□□□□□ -0.52
PTPN9-201ENST00000306726 RITA1Q96K30 269 aa11.82□□□□□ -0.52
PTPN9-201ENST00000306726 FBXL15Q9H469 300 aa11.82□□□□□ -0.52
PTPN9-201ENST00000306726 ZFP30Q9Y2G7 519 aa11.82□□□□□ -0.52
PTPN9-201ENST00000306726 Q8N7P7 452 aa11.81□□□□□ -0.52
PTPN9-201ENST00000306726 RPUSD1Q9UJJ7 312 aaKnown RBP11.81□□□□□ -0.52
PTPN9-201ENST00000306726 NACAE9PAV3 2078 aa11.81□□□□□ -0.52
PTPN9-201ENST00000306726 SRRM5B3KS81 715 aa11.81□□□□□ -0.52
PTPN9-201ENST00000306726 RPL24P83731 157 aaKnown RBP11.81□□□□□ -0.52
PTPN9-201ENST00000306726 PRSS57Q6UWY2 283 aa11.81□□□□□ -0.52
PTPN9-201ENST00000306726 TMEM70Q9BUB7 260 aa11.81□□□□□ -0.52
PTPN9-201ENST00000306726 GNB1LQ9BYB4 327 aa11.81□□□□□ -0.52
PTPN9-201ENST00000306726 LYPD2Q6UXB3 125 aa11.81□□□□□ -0.52
PTPN9-201ENST00000306726 TEX43Q6ZNM6 134 aa11.81□□□□□ -0.52
PTPN9-201ENST00000306726 ZNF430Q9H8G1 570 aaPredicted RBP11.81□□□□□ -0.52
PTPN9-201ENST00000306726 NKX6-3A6NJ46 265 aa11.8□□□□□ -0.52
PTPN9-201ENST00000306726 UPK2O00526 184 aa11.8□□□□□ -0.52
PTPN9-201ENST00000306726 ACACBO00763 2458 aa11.8□□□□□ -0.52
PTPN9-201ENST00000306726 HIST1H1EP10412 219 aaKnown RBP11.8□□□□□ -0.52
PTPN9-201ENST00000306726 MZT1Q08AG7 82 aa11.8□□□□□ -0.52
PTPN9-201ENST00000306726 SFTA2Q6UW10 78 aa11.8□□□□□ -0.52
PTPN9-201ENST00000306726 SMKR1H3BMG3 65 aa11.8□□□□□ -0.52
PTPN9-201ENST00000306726 SUB1P53999 127 aaKnown RBP eCLIP11.8□□□□□ -0.52
PTPN9-201ENST00000306726 LOXL3P58215 753 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms