RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 PSMB3P49720 205 aa10.51□□□□□ -0.73
CCDC88B-201ENST00000301897 SAMD13Q5VXD3 122 aa10.51□□□□□ -0.73
CCDC88B-201ENST00000301897 MZT2AQ6P582 158 aa10.51□□□□□ -0.73
CCDC88B-201ENST00000301897 C15orf53Q8NAA6 179 aa10.51□□□□□ -0.73
CCDC88B-201ENST00000301897 OR51G1Q8NGK1 321 aa10.51□□□□□ -0.73
CCDC88B-201ENST00000301897 OR13C8Q8NGS7 320 aa10.51□□□□□ -0.73
CCDC88B-201ENST00000301897 C15orf40Q8WUR7 153 aa10.51□□□□□ -0.73
CCDC88B-201ENST00000301897 ACY3Q96HD9 319 aa10.51□□□□□ -0.73
CCDC88B-201ENST00000301897 MTFP1Q9UDX5 166 aa10.51□□□□□ -0.73
CCDC88B-201ENST00000301897 TMED3Q9Y3Q3 217 aa10.51□□□□□ -0.73
CCDC88B-201ENST00000301897 PSG1P11464 419 aa10.5□□□□□ -0.73
CCDC88B-201ENST00000301897 NCS1P62166 190 aa10.5□□□□□ -0.73
CCDC88B-201ENST00000301897 C1orf194Q5T5A4 169 aa10.5□□□□□ -0.73
CCDC88B-201ENST00000301897 OR52I2Q8NH67 350 aa10.5□□□□□ -0.73
CCDC88B-201ENST00000301897 COQ8AQ8NI60 647 aa10.5□□□□□ -0.73
CCDC88B-201ENST00000301897 RNF125Q96EQ8 232 aa10.5□□□□□ -0.73
CCDC88B-201ENST00000301897 LINC00052Q96N35 136 aa10.5□□□□□ -0.73
CCDC88B-201ENST00000301897 PLA2G2EQ9NZK7 142 aa10.5□□□□□ -0.73
CCDC88B-201ENST00000301897 CACNG5Q9UF02 275 aa10.5□□□□□ -0.73
CCDC88B-201ENST00000301897 C14orf166Q9Y224 244 aaKnown RBP10.5□□□□□ -0.73
CCDC88B-201ENST00000301897 TEX13DA0A0J9YY54 714 aaPredicted RBP10.49□□□□□ -0.73
CCDC88B-201ENST00000301897 LOC102723971A0A1B0GUV8 181 aa10.49□□□□□ -0.73
CCDC88B-201ENST00000301897 FAM25AB3EWG3 89 aa10.49□□□□□ -0.73
CCDC88B-201ENST00000301897 FAM25CB3EWG5 89 aa10.49□□□□□ -0.73
CCDC88B-201ENST00000301897 FAM25GB3EWG6 89 aa10.49□□□□□ -0.73
CCDC88B-201ENST00000301897 CDK2AP2O75956 126 aa10.49□□□□□ -0.73
CCDC88B-201ENST00000301897 IGKV3-20P01619 116 aa10.49□□□□□ -0.73
CCDC88B-201ENST00000301897 FABP1P07148 127 aa10.49□□□□□ -0.73
CCDC88B-201ENST00000301897 HTN3P15516 51 aa10.49□□□□□ -0.73
CCDC88B-201ENST00000301897 ALDH3B2P48448 385 aa10.49□□□□□ -0.73
CCDC88B-201ENST00000301897 RORCP51449 518 aa10.49□□□□□ -0.73
CCDC88B-201ENST00000301897 VBP1P61758 197 aa10.49□□□□□ -0.73
CCDC88B-201ENST00000301897 DAD1P61803 113 aa10.49□□□□□ -0.73
CCDC88B-201ENST00000301897 PSG9Q00887 426 aa10.49□□□□□ -0.73
CCDC88B-201ENST00000301897 RRN3P1Q2M238 152 aa10.49□□□□□ -0.73
CCDC88B-201ENST00000301897 SCGB2B2Q4G0G5 96 aa10.49□□□□□ -0.73
CCDC88B-201ENST00000301897 RNASE12Q5GAN4 147 aaKnown RBP10.49□□□□□ -0.73
CCDC88B-201ENST00000301897 EBLN2Q6P2I7 272 aa10.49□□□□□ -0.73
CCDC88B-201ENST00000301897 ZNF709Q8N972 641 aa10.49□□□□□ -0.73
CCDC88B-201ENST00000301897 OR4B1Q8NGF8 309 aa10.49□□□□□ -0.73
CCDC88B-201ENST00000301897 GLYATL2Q8WU03 294 aa10.49□□□□□ -0.73
CCDC88B-201ENST00000301897 C7orf50Q9BRJ6 194 aaKnown RBP10.49□□□□□ -0.73
CCDC88B-201ENST00000301897 FUNDC2Q9BWH2 189 aa10.49□□□□□ -0.73
CCDC88B-201ENST00000301897 U3KQ87 197 aa10.49□□□□□ -0.73
CCDC88B-201ENST00000301897 ISLRO14498 428 aa10.48□□□□□ -0.73
CCDC88B-201ENST00000301897 NXPH3O95157 252 aa10.48□□□□□ -0.73
CCDC88B-201ENST00000301897 RAB3DO95716 219 aa10.48□□□□□ -0.73
CCDC88B-201ENST00000301897 OR5AC1P0C628 307 aa10.48□□□□□ -0.73
CCDC88B-201ENST00000301897 PAX9P55771 341 aa10.48□□□□□ -0.73
CCDC88B-201ENST00000301897 FXYD7P58549 80 aa10.48□□□□□ -0.73
CCDC88B-201ENST00000301897 TAS2R19P59542 299 aa10.48□□□□□ -0.73
CCDC88B-201ENST00000301897 SUPT4H1P63272 117 aaKnown RBP10.48□□□□□ -0.73
CCDC88B-201ENST00000301897 SURF2Q15527 256 aaPredicted RBP10.48□□□□□ -0.73
CCDC88B-201ENST00000301897 ZNF79Q15937 498 aa10.48□□□□□ -0.73
CCDC88B-201ENST00000301897 NMSQ5H8A3 153 aa10.48□□□□□ -0.73
CCDC88B-201ENST00000301897 GDF5OSQ5U4N7 250 aa10.48□□□□□ -0.73
CCDC88B-201ENST00000301897 TMEM88Q6PEY1 159 aa10.48□□□□□ -0.73
CCDC88B-201ENST00000301897 GSG1LQ6UXU4 331 aa10.48□□□□□ -0.73
CCDC88B-201ENST00000301897 TMEM229BQ8NBD8 167 aa10.48□□□□□ -0.73
CCDC88B-201ENST00000301897 OR4D10Q8NGI6 311 aa10.48□□□□□ -0.73
CCDC88B-201ENST00000301897 MARCH1Q8TCQ1 289 aa10.48□□□□□ -0.73
CCDC88B-201ENST00000301897 AP3S1Q92572 193 aa10.48□□□□□ -0.73
CCDC88B-201ENST00000301897 PBDC1Q9BVG4 233 aa10.48□□□□□ -0.73
CCDC88B-201ENST00000301897 NAA60Q9H7X0 242 aa10.48□□□□□ -0.73
CCDC88B-201ENST00000301897 YTHDF2Q9Y5A9 579 aaKnown RBP10.48□□□□□ -0.73
CCDC88B-201ENST00000301897 C16orf90A8MZG2 172 aa10.47□□□□□ -0.73
CCDC88B-201ENST00000301897 SMIM18P0DKX4 95 aa10.47□□□□□ -0.73
CCDC88B-201ENST00000301897 ATP5IP56385 69 aaPredicted RBP10.47□□□□□ -0.73
CCDC88B-201ENST00000301897 KLF9Q13886 244 aaPredicted RBP10.47□□□□□ -0.73
CCDC88B-201ENST00000301897 MEF2DQ14814 521 aa10.47□□□□□ -0.73
CCDC88B-201ENST00000301897 SELENOHQ8IZQ5 122 aaKnown RBP10.47□□□□□ -0.73
CCDC88B-201ENST00000301897 LHFPL5Q8TAF8 219 aa10.47□□□□□ -0.73
CCDC88B-201ENST00000301897 TMEM170AQ8WVE7 144 aa10.47□□□□□ -0.73
CCDC88B-201ENST00000301897 GPR146Q96CH1 333 aa10.47□□□□□ -0.73
CCDC88B-201ENST00000301897 ATG101Q9BSB4 218 aa10.47□□□□□ -0.73
CCDC88B-201ENST00000301897 KRTAP4-5Q9BYR2 181 aa10.47□□□□□ -0.73
CCDC88B-201ENST00000301897 SULT1A3P0DMM9 295 aa10.46□□□□□ -0.73
CCDC88B-201ENST00000301897 SULT1A4P0DMN0 295 aa10.46□□□□□ -0.73
CCDC88B-201ENST00000301897 MEOX2P50222 304 aa10.46□□□□□ -0.73
CCDC88B-201ENST00000301897 SSBP1Q04837 148 aaKnown RBP10.46□□□□□ -0.73
CCDC88B-201ENST00000301897 FAM78BQ5VT40 261 aa10.46□□□□□ -0.73
CCDC88B-201ENST00000301897 GPR107Q5VW38 600 aa10.46□□□□□ -0.73
CCDC88B-201ENST00000301897 TMEM268Q5VZI3 342 aa10.46□□□□□ -0.73
CCDC88B-201ENST00000301897 STEAP1BQ6NZ63 245 aa10.46□□□□□ -0.73
CCDC88B-201ENST00000301897 RTBDNQ9BSG5 229 aaPredicted RBP10.46□□□□□ -0.73
CCDC88B-201ENST00000301897 WDR12Q9GZL7 423 aaKnown RBP10.46□□□□□ -0.73
CCDC88B-201ENST00000301897 MAGT1Q9H0U3 335 aa10.46□□□□□ -0.73
CCDC88B-201ENST00000301897 RPRMQ9NS64 109 aa10.46□□□□□ -0.73
CCDC88B-201ENST00000301897 EXTL2Q9UBQ6 330 aa10.46□□□□□ -0.73
CCDC88B-201ENST00000301897 A0A0J9YX75 114 aa10.45□□□□□ -0.74
CCDC88B-201ENST00000301897 ZFP92A6NM28 416 aa10.45□□□□□ -0.74
CCDC88B-201ENST00000301897 LYRM9A8MSI8 78 aa10.45□□□□□ -0.74
CCDC88B-201ENST00000301897 GABARAPH6UMI1 98 aa10.45□□□□□ -0.74
CCDC88B-201ENST00000301897 SOCS3O14543 225 aa10.45□□□□□ -0.74
CCDC88B-201ENST00000301897 GABARAPO95166 117 aa10.45□□□□□ -0.74
CCDC88B-201ENST00000301897 GPX4P36969 197 aaPredicted RBP10.45□□□□□ -0.74
CCDC88B-201ENST00000301897 LGI3Q8N145 548 aa10.45□□□□□ -0.74
CCDC88B-201ENST00000301897 C1orf158Q8N1D5 194 aa10.45□□□□□ -0.74
CCDC88B-201ENST00000301897 IL22RA2Q969J5 263 aa10.45□□□□□ -0.74
CCDC88B-201ENST00000301897 PPP1R14BQ96C90 147 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms