RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 PAXXQ9BUH6 204 aa10.91□□□□□ -0.66
SKA3-201ENST00000298260 TTTY13Q9BZ97 58 aa10.91□□□□□ -0.66
SKA3-201ENST00000298260 NPFFR1Q9GZQ6 430 aa10.91□□□□□ -0.66
SKA3-201ENST00000298260 INTS1Q8N201 2190 aaKnown RBP10.91□□□□□ -0.66
SKA3-201ENST00000298260 NHLH1Q02575 133 aa10.91□□□□□ -0.66
SKA3-201ENST00000298260 FAM201AQ5SY85 155 aa10.91□□□□□ -0.66
SKA3-201ENST00000298260 RASL11AQ6T310 242 aa10.91□□□□□ -0.66
SKA3-201ENST00000298260 PATE2Q6UY27 113 aa10.91□□□□□ -0.66
SKA3-201ENST00000298260 MTURNQ8N3F0 131 aa10.91□□□□□ -0.66
SKA3-201ENST00000298260 KLF14Q8TD94 323 aaPredicted RBP10.91□□□□□ -0.66
SKA3-201ENST00000298260 TNFRSF14Q92956 283 aa10.91□□□□□ -0.66
SKA3-201ENST00000298260 TMEM14BQ9NUH8 114 aa10.91□□□□□ -0.66
SKA3-201ENST00000298260 LOC389332A0A1B0GUA5 103 aa10.9□□□□□ -0.66
SKA3-201ENST00000298260 SPAARA0A1B0GVQ0 90 aa10.9□□□□□ -0.66
SKA3-201ENST00000298260 CHEK1O14757 476 aa10.9□□□□□ -0.66
SKA3-201ENST00000298260 APOHP02749 345 aaPredicted RBP10.9□□□□□ -0.66
SKA3-201ENST00000298260 SLC25A5P05141 298 aaKnown RBP10.9□□□□□ -0.66
SKA3-201ENST00000298260 LIPFP07098 398 aa10.9□□□□□ -0.66
SKA3-201ENST00000298260 SAA2P0DJI9 122 aaPredicted RBP10.9□□□□□ -0.66
SKA3-201ENST00000298260 FGF6P10767 208 aa10.9□□□□□ -0.66
SKA3-201ENST00000298260 RND1Q92730 232 aa10.9□□□□□ -0.66
SKA3-201ENST00000298260 RP1L1Q8IWN7 2480 aaPredicted RBP10.9□□□□□ -0.66
SKA3-201ENST00000298260 TRGV8A0A0C4DH27 118 aa10.9□□□□□ -0.66
SKA3-201ENST00000298260 E7EUB6 86 aa10.9□□□□□ -0.66
SKA3-201ENST00000298260 OR5AL1P0C617 328 aa10.9□□□□□ -0.66
SKA3-201ENST00000298260 FOLR3P41439 243 aa10.9□□□□□ -0.66
SKA3-201ENST00000298260 TBC1D28Q2M2D7 210 aa10.9□□□□□ -0.66
SKA3-201ENST00000298260 RUSC1-AS1Q66K80 236 aa10.9□□□□□ -0.66
SKA3-201ENST00000298260 VWA1Q6PCB0 445 aa10.9□□□□□ -0.66
SKA3-201ENST00000298260 FAM231DQ6ZW35 169 aa10.9□□□□□ -0.66
SKA3-201ENST00000298260 PCP2Q8IVA1 136 aa10.9□□□□□ -0.66
SKA3-201ENST00000298260 NEU4Q8WWR8 484 aaPredicted RBP10.9□□□□□ -0.66
SKA3-201ENST00000298260 AKAP13Q12802 2813 aa10.9□□□□□ -0.66
SKA3-201ENST00000298260 PGPA6NDG6 321 aa10.9□□□□□ -0.67
SKA3-201ENST00000298260 K7ERJ3 54 aa10.9□□□□□ -0.67
SKA3-201ENST00000298260 LINC01545Q5VT33 79 aa10.9□□□□□ -0.67
SKA3-201ENST00000298260 DUX4L9Q6RFH8 374 aaPredicted RBP10.9□□□□□ -0.67
SKA3-201ENST00000298260 PET117Q6UWS5 81 aa10.9□□□□□ -0.67
SKA3-201ENST00000298260 FAM90A1Q86YD7 464 aa10.9□□□□□ -0.67
SKA3-201ENST00000298260 CHCHD1Q96BP2 118 aaKnown RBP10.9□□□□□ -0.67
SKA3-201ENST00000298260 C18orf15Q96N68 181 aa10.9□□□□□ -0.67
SKA3-201ENST00000298260 TPPP3Q9BW30 176 aa10.9□□□□□ -0.67
SKA3-201ENST00000298260 MRPL36Q9P0J6 103 aaKnown RBP10.9□□□□□ -0.67
SKA3-201ENST00000298260 MGST3O14880 152 aa10.89□□□□□ -0.67
SKA3-201ENST00000298260 SP9P0CG40 484 aa10.89□□□□□ -0.67
SKA3-201ENST00000298260 LOXL3P58215 753 aa10.89□□□□□ -0.67
SKA3-201ENST00000298260 SPRNQ5BIV9 151 aa10.89□□□□□ -0.67
SKA3-201ENST00000298260 SAP25Q8TEE9 199 aa10.89□□□□□ -0.67
SKA3-201ENST00000298260 RPP21Q9H633 154 aaKnown RBP10.89□□□□□ -0.67
SKA3-201ENST00000298260 C1RLQ9NZP8 487 aa10.89□□□□□ -0.67
SKA3-201ENST00000298260 JKAMPQ9P055 326 aa10.89□□□□□ -0.67
SKA3-201ENST00000298260 COX7A2P2O60397 106 aa10.89□□□□□ -0.67
SKA3-201ENST00000298260 CT45A1Q5HYN5 189 aa10.89□□□□□ -0.67
SKA3-201ENST00000298260 RNFT1Q5M7Z0 435 aa10.89□□□□□ -0.67
SKA3-201ENST00000298260 PPP1R32Q7Z5V6 425 aa10.89□□□□□ -0.67
SKA3-201ENST00000298260 CIARTQ8N365 385 aaPredicted RBP10.89□□□□□ -0.67
SKA3-201ENST00000298260 CT45A3Q8NHU0 189 aa10.89□□□□□ -0.67
SKA3-201ENST00000298260 DDB2Q92466 427 aa10.89□□□□□ -0.67
SKA3-201ENST00000298260 IGHV3-21A0A0B4J1V1 117 aa10.88□□□□□ -0.67
SKA3-201ENST00000298260 PSMB11A5LHX3 300 aa10.88□□□□□ -0.67
SKA3-201ENST00000298260 P01737 135 aa10.88□□□□□ -0.67
SKA3-201ENST00000298260 ADH4P08319 380 aa10.88□□□□□ -0.67
SKA3-201ENST00000298260 ORM2P19652 201 aa10.88□□□□□ -0.67
SKA3-201ENST00000298260 PRDX2P32119 198 aa10.88□□□□□ -0.67
SKA3-201ENST00000298260 NMUP48645 174 aa10.88□□□□□ -0.67
SKA3-201ENST00000298260 ITLN1Q8WWA0 313 aa10.88□□□□□ -0.67
SKA3-201ENST00000298260 ZNF747Q9BV97 191 aa10.88□□□□□ -0.67
SKA3-201ENST00000298260 TACC2O95359 2948 aa10.88□□□□□ -0.67
SKA3-201ENST00000298260 PCSK5Q92824 1860 aa10.88□□□□□ -0.67
SKA3-201ENST00000298260 PPIAL4EA0A075B759 164 aa10.88□□□□□ -0.67
SKA3-201ENST00000298260 H3BRM9 83 aa10.88□□□□□ -0.67
SKA3-201ENST00000298260 APELAP0DMC3 54 aa10.88□□□□□ -0.67
SKA3-201ENST00000298260 PPIAL4FP0DN26 164 aa10.88□□□□□ -0.67
SKA3-201ENST00000298260 FCGR2BP31994 310 aaPredicted RBP10.88□□□□□ -0.67
SKA3-201ENST00000298260 REG1BP48304 166 aa10.88□□□□□ -0.67
SKA3-201ENST00000298260 SEC11AP67812 179 aa10.88□□□□□ -0.67
SKA3-201ENST00000298260 C10orf55Q5SWW7 151 aa10.88□□□□□ -0.67
SKA3-201ENST00000298260 FLYWCH2Q96CP2 140 aaKnown RBP10.88□□□□□ -0.67
SKA3-201ENST00000298260 MS4A6AQ9H2W1 248 aa10.88□□□□□ -0.67
SKA3-201ENST00000298260 FOXA2Q9Y261 457 aaPredicted RBP10.88□□□□□ -0.67
SKA3-201ENST00000298260 SPTBN4Q9H254 2564 aa10.87□□□□□ -0.67
SKA3-201ENST00000298260 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.87□□□□□ -0.67
SKA3-201ENST00000298260 F2RL2O00254 374 aa10.87□□□□□ -0.67
SKA3-201ENST00000298260 PLGLB1Q02325 96 aa10.87□□□□□ -0.67
SKA3-201ENST00000298260 ZNF788Q6ZQV5 615 aa10.87□□□□□ -0.67
SKA3-201ENST00000298260 VSTM2AQ8TAG5 236 aa10.87□□□□□ -0.67
SKA3-201ENST00000298260 NPIPB3Q92617 1050 aa10.87□□□□□ -0.67
SKA3-201ENST00000298260 FXYD5Q96DB9 178 aa10.87□□□□□ -0.67
SKA3-201ENST00000298260 IGKV1D-17A0A075B6S4 117 aa10.87□□□□□ -0.67
SKA3-201ENST00000298260 A0A1W2PPM0 123 aa10.87□□□□□ -0.67
SKA3-201ENST00000298260 A8MWL6 223 aa10.87□□□□□ -0.67
SKA3-201ENST00000298260 C10orf113Q5VZT2 155 aa10.87□□□□□ -0.67
SKA3-201ENST00000298260 TSSC4Q9Y5U2 329 aaPredicted RBP10.87□□□□□ -0.67
SKA3-201ENST00000298260 INSIG2Q9Y5U4 225 aa10.87□□□□□ -0.67
SKA3-201ENST00000298260 DSCAMO60469 2012 aa10.87□□□□□ -0.67
SKA3-201ENST00000298260 TEX50A0A1B0GTY4 177 aa10.86□□□□□ -0.67
SKA3-201ENST00000298260 FAM90A9PA6NNJ1 464 aa10.86□□□□□ -0.67
SKA3-201ENST00000298260 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.86□□□□□ -0.67
SKA3-201ENST00000298260 IFI27P40305 119 aaPredicted RBP10.86□□□□□ -0.67
SKA3-201ENST00000298260 TIMM23BQ5SRD1 257 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms