RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 SAA2P0DJI9 122 aaPredicted RBP7.8□□□□□ -1.16
CUX1-201ENST00000292535 RPL32P62910 135 aaKnown RBP7.8□□□□□ -1.16
CUX1-201ENST00000292535 CARHSP1Q9Y2V2 147 aaKnown RBP7.8□□□□□ -1.16
CUX1-201ENST00000292535 TRBV7-1A0A0A6YYK4 115 aa7.8□□□□□ -1.16
CUX1-201ENST00000292535 ZFAND6Q6FIF0 208 aa7.8□□□□□ -1.16
CUX1-201ENST00000292535 FAM166AQ6J272 317 aa7.8□□□□□ -1.16
CUX1-201ENST00000292535 FAM216BQ8N7L0 139 aa7.8□□□□□ -1.16
CUX1-201ENST00000292535 PCP4P48539 62 aa7.8□□□□□ -1.16
CUX1-201ENST00000292535 DNAJC30Q96LL9 226 aa7.8□□□□□ -1.16
CUX1-201ENST00000292535 HBDP02042 147 aa7.8□□□□□ -1.16
CUX1-201ENST00000292535 PLAC1Q9HBJ0 212 aa7.8□□□□□ -1.16
CUX1-201ENST00000292535 RNF166Q96A37 237 aaPredicted RBP7.8□□□□□ -1.16
CUX1-201ENST00000292535 IGKCP01834 107 aa7.8□□□□□ -1.16
CUX1-201ENST00000292535 PLEKHB2Q96CS7 222 aa7.79□□□□□ -1.16
CUX1-201ENST00000292535 LINC00271P0C7V0 271 aa7.79□□□□□ -1.16
CUX1-201ENST00000292535 CRYBA2P53672 197 aa7.79□□□□□ -1.16
CUX1-201ENST00000292535 RHOGP84095 191 aa7.79□□□□□ -1.16
CUX1-201ENST00000292535 RASL11AQ6T310 242 aa7.79□□□□□ -1.16
CUX1-201ENST00000292535 OVOL1O14753 267 aa7.79□□□□□ -1.16
CUX1-201ENST00000292535 ZNF497Q6ZNH5 498 aa7.79□□□□□ -1.16
CUX1-201ENST00000292535 SLC25A48Q6ZT89 311 aaKnown RBP7.79□□□□□ -1.16
CUX1-201ENST00000292535 TNFRSF14Q92956 283 aa7.79□□□□□ -1.16
CUX1-201ENST00000292535 ITGB1BP1O14713 200 aa7.79□□□□□ -1.16
CUX1-201ENST00000292535 LDLRAD4O15165 306 aa7.79□□□□□ -1.16
CUX1-201ENST00000292535 SAP30O75446 220 aa7.79□□□□□ -1.16
CUX1-201ENST00000292535 CEP192Q8TEP8 1941 aa7.79□□□□□ -1.16
CUX1-201ENST00000292535 INSP01308 110 aa7.79□□□□□ -1.16
CUX1-201ENST00000292535 EIF4EBP2Q13542 120 aaPredicted RBP7.79□□□□□ -1.16
CUX1-201ENST00000292535 GLMPQ8WWB7 406 aa7.79□□□□□ -1.16
CUX1-201ENST00000292535 SPSB2Q99619 263 aa7.79□□□□□ -1.16
CUX1-201ENST00000292535 UPK2O00526 184 aa7.79□□□□□ -1.16
CUX1-201ENST00000292535 C18orf12Q96KH6 178 aa7.79□□□□□ -1.16
CUX1-201ENST00000292535 SPACA3Q8IXA5 215 aa7.79□□□□□ -1.16
CUX1-201ENST00000292535 EDA2RQ9HAV5 297 aa7.79□□□□□ -1.16
CUX1-201ENST00000292535 TRAV2A0A0B4J234 112 aa7.78□□□□□ -1.16
CUX1-201ENST00000292535 IMMP1LQ96LU5 166 aa7.78□□□□□ -1.16
CUX1-201ENST00000292535 FRMPD3Q5JV73 1810 aa7.78□□□□□ -1.16
CUX1-201ENST00000292535 A0A1W2PRE2 83 aa7.78□□□□□ -1.16
CUX1-201ENST00000292535 FAM223BA6NKX1 122 aa7.78□□□□□ -1.16
CUX1-201ENST00000292535 ZNF562Q6V9R5 426 aa7.78□□□□□ -1.16
CUX1-201ENST00000292535 FAM223AQ8IWN6 122 aa7.78□□□□□ -1.16
CUX1-201ENST00000292535 GPHA2Q96T91 129 aa7.78□□□□□ -1.16
CUX1-201ENST00000292535 C1QTNF4Q9BXJ3 329 aa7.78□□□□□ -1.16
CUX1-201ENST00000292535 TMEM133Q9H2Q1 129 aa7.78□□□□□ -1.16
CUX1-201ENST00000292535 TRAV9-2A0A087WT02 112 aa7.78□□□□□ -1.16
CUX1-201ENST00000292535 A8MWV9 139 aa7.78□□□□□ -1.16
CUX1-201ENST00000292535 LINC01590Q5TEZ4 76 aa7.78□□□□□ -1.16
CUX1-201ENST00000292535 CCL20P78556 96 aa7.78□□□□□ -1.16
CUX1-201ENST00000292535 C20orf204Q6ZNR8 217 aa7.78□□□□□ -1.16
CUX1-201ENST00000292535 AMELYQ99218 206 aa7.78□□□□□ -1.16
CUX1-201ENST00000292535 OR9G9P0C7N8 305 aa7.78□□□□□ -1.16
CUX1-201ENST00000292535 ERCC8Q13216 396 aa7.78□□□□□ -1.16
CUX1-201ENST00000292535 ERG28Q9UKR5 140 aa7.78□□□□□ -1.16
CUX1-201ENST00000292535 IGF2RP11717 2491 aa7.78□□□□□ -1.16
CUX1-201ENST00000292535 PIN1P1O15428 100 aa7.78□□□□□ -1.16
CUX1-201ENST00000292535 RTBDNQ9BSG5 229 aaPredicted RBP7.78□□□□□ -1.16
CUX1-201ENST00000292535 A0A1W2PR77 199 aa7.78□□□□□ -1.16
CUX1-201ENST00000292535 SRSF4Q08170 494 aaKnown RBP7.78□□□□□ -1.16
CUX1-201ENST00000292535 DMRTA1Q5VZB9 504 aa7.78□□□□□ -1.16
CUX1-201ENST00000292535 RPL36AP83881 106 aaKnown RBP7.77□□□□□ -1.16
CUX1-201ENST00000292535 RPL36ALQ969Q0 106 aaKnown RBP7.77□□□□□ -1.16
CUX1-201ENST00000292535 ST6GALNAC6Q969X2 333 aa7.77□□□□□ -1.16
CUX1-201ENST00000292535 TRGV9Q99603 122 aa7.77□□□□□ -1.16
CUX1-201ENST00000292535 NRN1Q9NPD7 142 aa7.77□□□□□ -1.16
CUX1-201ENST00000292535 WISP3O95389 354 aaPredicted RBP7.77□□□□□ -1.17
CUX1-201ENST00000292535 LINC00614P0C842 121 aa7.77□□□□□ -1.17
CUX1-201ENST00000292535 ORAOV1Q8WV07 137 aa7.77□□□□□ -1.17
CUX1-201ENST00000292535 IGHV2-26A0A0B4J1V2 119 aa7.77□□□□□ -1.17
CUX1-201ENST00000292535 TNFSF13O75888 250 aa7.77□□□□□ -1.17
CUX1-201ENST00000292535 SRSF7Q16629 238 aaKnown RBP eCLIP7.77□□□□□ -1.171e-8■■■■■ 28.4
CUX1-201ENST00000292535 OR10W1Q8NGF6 305 aa7.77□□□□□ -1.17
CUX1-201ENST00000292535 C17orf98A8MV24 154 aa7.77□□□□□ -1.17
CUX1-201ENST00000292535 LEPROTO15243 131 aa7.77□□□□□ -1.17
CUX1-201ENST00000292535 CELA3BP08861 270 aa7.77□□□□□ -1.17
CUX1-201ENST00000292535 INS-IGF2F8WCM5 200 aa7.77□□□□□ -1.17
CUX1-201ENST00000292535 MINOS1Q5TGZ0 78 aa7.77□□□□□ -1.17
CUX1-201ENST00000292535 ST6GALNAC3Q8NDV1 305 aa7.77□□□□□ -1.17
CUX1-201ENST00000292535 RNF5Q99942 180 aa7.77□□□□□ -1.17
CUX1-201ENST00000292535 MINOS1-NBL1R4GNA1 71 aa7.77□□□□□ -1.17
CUX1-201ENST00000292535 E9PLN8 166 aa7.77□□□□□ -1.17
CUX1-201ENST00000292535 PAX4O43316 350 aa7.77□□□□□ -1.17
CUX1-201ENST00000292535 CELA3AP09093 270 aa7.77□□□□□ -1.17
CUX1-201ENST00000292535 CSRP1P21291 193 aaKnown RBP7.77□□□□□ -1.17
CUX1-201ENST00000292535 KLF12Q9Y4X4 402 aa7.77□□□□□ -1.17
CUX1-201ENST00000292535 C15orf32Q32M92 178 aa7.77□□□□□ -1.17
CUX1-201ENST00000292535 SNAI2O43623 268 aa7.77□□□□□ -1.17
CUX1-201ENST00000292535 H3BUT2 72 aa7.76□□□□□ -1.17
CUX1-201ENST00000292535 LTBRP36941 435 aa7.76□□□□□ -1.17
CUX1-201ENST00000292535 CDKN1AP38936 164 aa7.76□□□□□ -1.17
CUX1-201ENST00000292535 CFHR1Q03591 330 aa7.76□□□□□ -1.17
CUX1-201ENST00000292535 ANAPC10Q9UM13 185 aa7.76□□□□□ -1.17
CUX1-201ENST00000292535 OBSL1O75147 1896 aa7.76□□□□□ -1.17
CUX1-201ENST00000292535 H2BFSP57053 126 aa7.76□□□□□ -1.17
CUX1-201ENST00000292535 SNHG12Q9BXW3 62 aa7.76□□□□□ -1.17
CUX1-201ENST00000292535 OOSP1A8MZH6 123 aa7.76□□□□□ -1.17
CUX1-201ENST00000292535 GATD1Q8NB37 220 aa7.76□□□□□ -1.17
CUX1-201ENST00000292535 NHP2Q9NX24 153 aaKnown RBP7.76□□□□□ -1.17
CUX1-201ENST00000292535 LTBP4Q8N2S1 1624 aa7.76□□□□□ -1.17
CUX1-201ENST00000292535 EPOPA6NHQ4 379 aa7.76□□□□□ -1.17
CUX1-201ENST00000292535 MESP2Q0VG99 397 aa7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms