RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 FBLN7Q53RD9 439 aa15.99■□□□□ 0.15
VPS53-201ENST00000291074 IBA57Q5T440 356 aaKnown RBP15.99■□□□□ 0.15
VPS53-201ENST00000291074 TMEM18Q96B42 140 aa15.99■□□□□ 0.15
VPS53-201ENST00000291074 SERTAD4Q9NUC0 356 aa15.99■□□□□ 0.15
VPS53-201ENST00000291074 H3BTX0 84 aa15.98■□□□□ 0.15
VPS53-201ENST00000291074 PEX7O00628 323 aa15.98■□□□□ 0.15
VPS53-201ENST00000291074 TPTE2P1Q5T6R2 138 aa15.98■□□□□ 0.15
VPS53-201ENST00000291074 C11orf71Q6IPW1 123 aa15.98■□□□□ 0.15
VPS53-201ENST00000291074 PERPQ96FX8 193 aa15.98■□□□□ 0.15
VPS53-201ENST00000291074 CDC42EP3Q9UKI2 254 aa15.98■□□□□ 0.15
VPS53-201ENST00000291074 SNURFLB1AK76 121 aa15.98■□□□□ 0.15
VPS53-201ENST00000291074 MMDQ15546 238 aa15.98■□□□□ 0.15
VPS53-201ENST00000291074 SGK494Q96LW2 274 aa15.98■□□□□ 0.15
VPS53-201ENST00000291074 ISLRO14498 428 aa15.97■□□□□ 0.15
VPS53-201ENST00000291074 OR5R1Q8NH85 324 aa15.97■□□□□ 0.15
VPS53-201ENST00000291074 TIMD4Q96H15 378 aa15.97■□□□□ 0.15
VPS53-201ENST00000291074 TP53TG3Q9ULZ0 132 aa15.97■□□□□ 0.15
VPS53-201ENST00000291074 FAM168AQ92567 244 aa15.97■□□□□ 0.15
VPS53-201ENST00000291074 HTR1DP28221 377 aa15.96■□□□□ 0.15
VPS53-201ENST00000291074 ITPR1Q14643 2758 aa15.96■□□□□ 0.15
VPS53-201ENST00000291074 DNLZQ5SXM8 178 aa15.96■□□□□ 0.15
VPS53-201ENST00000291074 SSBP3Q9BWW4 388 aaPredicted RBP15.96■□□□□ 0.15
VPS53-201ENST00000291074 RPH3ALQ9UNE2 315 aa15.96■□□□□ 0.15
VPS53-201ENST00000291074 HYPMO75409 117 aa15.96■□□□□ 0.15
VPS53-201ENST00000291074 CNIH1O95406 144 aa15.96■□□□□ 0.15
VPS53-201ENST00000291074 FAM103A1Q9BTL3 118 aaKnown RBP15.96■□□□□ 0.15
VPS53-201ENST00000291074 A0A1W2PPR1 153 aa15.95■□□□□ 0.14
VPS53-201ENST00000291074 LY6DQ14210 128 aa15.95■□□□□ 0.14
VPS53-201ENST00000291074 SVEP1Q4LDE5 3571 aa15.95■□□□□ 0.14
VPS53-201ENST00000291074 ZNF705GA8MUZ8 300 aaPredicted RBP15.95■□□□□ 0.14
VPS53-201ENST00000291074 F2Z2F3 143 aa15.95■□□□□ 0.14
VPS53-201ENST00000291074 CORTO00230 105 aa15.95■□□□□ 0.14
VPS53-201ENST00000291074 MYCNOSP40205 109 aa15.95■□□□□ 0.14
VPS53-201ENST00000291074 CX3CL1P78423 397 aa15.95■□□□□ 0.14
VPS53-201ENST00000291074 WNT10AQ9GZT5 417 aa15.95■□□□□ 0.14
VPS53-201ENST00000291074 DPM3Q9P2X0 92 aa15.95■□□□□ 0.14
VPS53-201ENST00000291074 AKAP6Q13023 2319 aa15.94■□□□□ 0.14
VPS53-201ENST00000291074 LINC00310P59036 64 aa15.94■□□□□ 0.14
VPS53-201ENST00000291074 MRPL54Q6P161 138 aaKnown RBP15.94■□□□□ 0.14
VPS53-201ENST00000291074 BAGE2Q86Y30 109 aa15.94■□□□□ 0.14
VPS53-201ENST00000291074 CFHR4Q92496 578 aa15.94■□□□□ 0.14
VPS53-201ENST00000291074 LOC105371242A0A075B767 164 aa15.94■□□□□ 0.14
VPS53-201ENST00000291074 I3L2K1 104 aa15.94■□□□□ 0.14
VPS53-201ENST00000291074 SLC25A5P05141 298 aaKnown RBP15.94■□□□□ 0.14
VPS53-201ENST00000291074 IGLC1P0CG04 106 aa15.94■□□□□ 0.14
VPS53-201ENST00000291074 PSG1P11464 419 aa15.94■□□□□ 0.14
VPS53-201ENST00000291074 LYZP61626 148 aa15.94■□□□□ 0.14
VPS53-201ENST00000291074 USF2Q15853 346 aaPredicted RBP15.94■□□□□ 0.14
VPS53-201ENST00000291074 PRR27Q6MZM9 219 aa15.94■□□□□ 0.14
VPS53-201ENST00000291074 OR11H6Q8NGC7 330 aa15.94■□□□□ 0.14
VPS53-201ENST00000291074 PGPA6NDG6 321 aa15.93■□□□□ 0.14
VPS53-201ENST00000291074 GP9P14770 177 aa15.93■□□□□ 0.14
VPS53-201ENST00000291074 NDUFS7O75251 213 aa15.93■□□□□ 0.14
VPS53-201ENST00000291074 NBEAP1P0C6P0 100 aa15.93■□□□□ 0.14
VPS53-201ENST00000291074 CRISP2P16562 243 aa15.93■□□□□ 0.14
VPS53-201ENST00000291074 ATG101Q9BSB4 218 aa15.92■□□□□ 0.14
VPS53-201ENST00000291074 NAT8BQ9UHF3 227 aa15.92■□□□□ 0.14
VPS53-201ENST00000291074 SMIM27A0A1W2PRY6 76 aa15.92■□□□□ 0.14
VPS53-201ENST00000291074 CDKN1AP38936 164 aa15.92■□□□□ 0.14
VPS53-201ENST00000291074 PKIAP61925 76 aa15.92■□□□□ 0.14
VPS53-201ENST00000291074 KIAA1644Q3SXP7 199 aa15.92■□□□□ 0.14
VPS53-201ENST00000291074 STXBP6Q8NFX7 210 aa15.92■□□□□ 0.14
VPS53-201ENST00000291074 CMTM2Q8TAZ6 248 aa15.92■□□□□ 0.14
VPS53-201ENST00000291074 EPDR1Q9UM22 224 aa15.92■□□□□ 0.14
VPS53-201ENST00000291074 TCAPO15273 167 aa15.91■□□□□ 0.14
VPS53-201ENST00000291074 NBR2O15453 112 aa15.91■□□□□ 0.14
VPS53-201ENST00000291074 RAB4BP61018 213 aa15.91■□□□□ 0.14
VPS53-201ENST00000291074 PAX2Q02962 417 aa15.91■□□□□ 0.14
VPS53-201ENST00000291074 HES1Q14469 280 aa15.91■□□□□ 0.14
VPS53-201ENST00000291074 C21orf62-AS1Q17RA5 79 aa15.91■□□□□ 0.14
VPS53-201ENST00000291074 RBM14Q96PK6 669 aaKnown RBP15.91■□□□□ 0.14
VPS53-201ENST00000291074 RNF5Q99942 180 aa15.91■□□□□ 0.14
VPS53-201ENST00000291074 GNB1LQ9BYB4 327 aa15.91■□□□□ 0.14
VPS53-201ENST00000291074 TSTD3H0UI37 97 aa15.91■□□□□ 0.14
VPS53-201ENST00000291074 SERF1AO75920 110 aa15.91■□□□□ 0.14
VPS53-201ENST00000291074 KLF17Q5JT82 389 aaPredicted RBP15.91■□□□□ 0.14
VPS53-201ENST00000291074 TMEM136Q6ZRR5 245 aa15.91■□□□□ 0.14
VPS53-201ENST00000291074 S4R3C0 116 aa15.91■□□□□ 0.14
VPS53-201ENST00000291074 NEU4Q8WWR8 484 aaPredicted RBP15.91■□□□□ 0.14
VPS53-201ENST00000291074 HIGD1AQ9Y241 93 aa15.91■□□□□ 0.14
VPS53-201ENST00000291074 ODF3BA8MYP8 253 aa15.9■□□□□ 0.14
VPS53-201ENST00000291074 K7EIM0 57 aa15.9■□□□□ 0.14
VPS53-201ENST00000291074 IGKV1-17P01599 117 aa15.9■□□□□ 0.14
VPS53-201ENST00000291074 CD33P20138 364 aa15.9■□□□□ 0.14
VPS53-201ENST00000291074 PLP1P60201 277 aa15.9■□□□□ 0.14
VPS53-201ENST00000291074 UBE2G1P62253 170 aa15.9■□□□□ 0.14
VPS53-201ENST00000291074 DYNAPQ8N1N2 210 aa15.9■□□□□ 0.14
VPS53-201ENST00000291074 ZNF664Q8N3J9 261 aa15.9■□□□□ 0.14
VPS53-201ENST00000291074 NUDT10Q8NFP7 164 aa15.9■□□□□ 0.14
VPS53-201ENST00000291074 NUDT11Q96G61 164 aa15.9■□□□□ 0.14
VPS53-201ENST00000291074 NEU1Q99519 415 aa15.9■□□□□ 0.14
VPS53-201ENST00000291074 RASL11BQ9BPW5 248 aa15.9■□□□□ 0.14
VPS53-201ENST00000291074 PRTN3P24158 256 aa15.89■□□□□ 0.13
VPS53-201ENST00000291074 G0S2P27469 103 aa15.89■□□□□ 0.13
VPS53-201ENST00000291074 TMEM183BQ1AE95 376 aa15.89■□□□□ 0.13
VPS53-201ENST00000291074 TRBV9A0A0B4J1U6 114 aa15.89■□□□□ 0.13
VPS53-201ENST00000291074 M0R1W7 72 aa15.89■□□□□ 0.13
VPS53-201ENST00000291074 Q9H3A6 140 aa15.89■□□□□ 0.13
VPS53-201ENST00000291074 CEACAM3P40198 252 aa15.88■□□□□ 0.13
VPS53-201ENST00000291074 BAGE3Q86Y29 109 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms