RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 CRYBB3P26998 211 aa10.58□□□□□ -0.72
USP40-201ENST00000251722 C1QL2Q7Z5L3 287 aa10.58□□□□□ -0.72
USP40-201ENST00000251722 VKORC1L1Q8N0U8 176 aa10.58□□□□□ -0.72
USP40-201ENST00000251722 PPDPFLQ8WWR9 84 aa10.58□□□□□ -0.72
USP40-201ENST00000251722 TET1Q8NFU7 2136 aa10.58□□□□□ -0.72
USP40-201ENST00000251722 IGLC2P0DOY2 106 aa10.58□□□□□ -0.72
USP40-201ENST00000251722 IGLC3P0DOY3 106 aa10.58□□□□□ -0.72
USP40-201ENST00000251722 GAS1P54826 345 aa10.58□□□□□ -0.72
USP40-201ENST00000251722 FOXL2NBQ6ZUU3 175 aa10.58□□□□□ -0.72
USP40-201ENST00000251722 PTPRFP10586 1907 aa10.58□□□□□ -0.72
USP40-201ENST00000251722 TRBV6-6A0A0A6YYG2 114 aa10.58□□□□□ -0.72
USP40-201ENST00000251722 J3QLI3 93 aa10.58□□□□□ -0.72
USP40-201ENST00000251722 OR5AN1Q8NGI8 311 aa10.58□□□□□ -0.72
USP40-201ENST00000251722 RNF166Q96A37 237 aaPredicted RBP10.58□□□□□ -0.72
USP40-201ENST00000251722 LINC01587Q99440 93 aa10.58□□□□□ -0.72
USP40-201ENST00000251722 CGB1A6NKQ9 187 aa10.57□□□□□ -0.72
USP40-201ENST00000251722 PRSS2P07478 247 aa10.57□□□□□ -0.72
USP40-201ENST00000251722 RASL11AQ6T310 242 aa10.57□□□□□ -0.72
USP40-201ENST00000251722 PGLYRP4Q96LB8 373 aa10.57□□□□□ -0.72
USP40-201ENST00000251722 J3QKU1 62 aa10.57□□□□□ -0.72
USP40-201ENST00000251722 PEX7O00628 323 aa10.57□□□□□ -0.72
USP40-201ENST00000251722 ZNF837Q96EG3 531 aaPredicted RBP10.57□□□□□ -0.72
USP40-201ENST00000251722 IZUMO1RA6ND01 250 aa10.57□□□□□ -0.72
USP40-201ENST00000251722 NABP1Q96AH0 204 aa10.57□□□□□ -0.72
USP40-201ENST00000251722 KIR2DL5BA0A0G2JN68 375 aa10.57□□□□□ -0.72
USP40-201ENST00000251722 KIR2DL5BA0A0G2JPC4 375 aa10.57□□□□□ -0.72
USP40-201ENST00000251722 TNFRSF6BO95407 300 aa10.57□□□□□ -0.72
USP40-201ENST00000251722 Q0VFX4 171 aa10.57□□□□□ -0.72
USP40-201ENST00000251722 KIR2DL5AQ8N109 375 aa10.57□□□□□ -0.72
USP40-201ENST00000251722 DOCK6Q96HP0 2047 aa10.56□□□□□ -0.72
USP40-201ENST00000251722 IGHV2-26A0A0B4J1V2 119 aa10.56□□□□□ -0.72
USP40-201ENST00000251722 TRAV40A0A0B4J280 105 aa10.56□□□□□ -0.72
USP40-201ENST00000251722 FAM201AQ5SY85 155 aa10.56□□□□□ -0.72
USP40-201ENST00000251722 FAM223BA6NKX1 122 aa10.56□□□□□ -0.72
USP40-201ENST00000251722 IGF2-ASQ6U949 168 aa10.56□□□□□ -0.72
USP40-201ENST00000251722 FAM223AQ8IWN6 122 aa10.56□□□□□ -0.72
USP40-201ENST00000251722 TRBV7-1A0A0A6YYK4 115 aa10.56□□□□□ -0.72
USP40-201ENST00000251722 CCL3L1P16619 93 aa10.56□□□□□ -0.72
USP40-201ENST00000251722 RHOGP84095 191 aa10.56□□□□□ -0.72
USP40-201ENST00000251722 LINC01559Q495D7 138 aa10.56□□□□□ -0.72
USP40-201ENST00000251722 LYZL4Q96KX0 146 aa10.56□□□□□ -0.72
USP40-201ENST00000251722 MBNL3Q9NUK0 354 aaKnown RBP10.56□□□□□ -0.72
USP40-201ENST00000251722 TRAV8-6A0A0B4J262 113 aa10.56□□□□□ -0.72
USP40-201ENST00000251722 TRAV21A0A0B4J279 112 aa10.56□□□□□ -0.72
USP40-201ENST00000251722 IGHV1-8P0DP01 117 aa10.56□□□□□ -0.72
USP40-201ENST00000251722 MST1P26927 711 aa10.56□□□□□ -0.72
USP40-201ENST00000251722 C18orf12Q96KH6 178 aa10.56□□□□□ -0.72
USP40-201ENST00000251722 FOXF2Q12947 444 aa10.56□□□□□ -0.72
USP40-201ENST00000251722 PRSS8Q16651 343 aa10.56□□□□□ -0.72
USP40-201ENST00000251722 TCTEX1D4Q5JR98 221 aa10.56□□□□□ -0.72
USP40-201ENST00000251722 VMO1Q7Z5L0 202 aa10.56□□□□□ -0.72
USP40-201ENST00000251722 RNF125Q96EQ8 232 aa10.56□□□□□ -0.72
USP40-201ENST00000251722 MGAMO43451 1857 aa10.55□□□□□ -0.72
USP40-201ENST00000251722 SCN5AQ14524 2016 aa10.55□□□□□ -0.72
USP40-201ENST00000251722 TRAV24A0A0B4J272 114 aa10.55□□□□□ -0.72
USP40-201ENST00000251722 ZNHIT1O43257 154 aa10.55□□□□□ -0.72
USP40-201ENST00000251722 CLPSP04118 112 aa10.55□□□□□ -0.72
USP40-201ENST00000251722 PAX8Q06710 450 aa10.55□□□□□ -0.72
USP40-201ENST00000251722 NUP214P35658 2090 aaPredicted RBP10.55□□□□□ -0.72
USP40-201ENST00000251722 LY6G6FQ5SQ64 297 aa10.55□□□□□ -0.72
USP40-201ENST00000251722 C1QTNF4Q9BXJ3 329 aa10.55□□□□□ -0.72
USP40-201ENST00000251722 TIMM23O14925 209 aa10.55□□□□□ -0.72
USP40-201ENST00000251722 DNAL4O96015 105 aa10.55□□□□□ -0.72
USP40-201ENST00000251722 DUTP33316 252 aaKnown RBP10.55□□□□□ -0.72
USP40-201ENST00000251722 MRPL27Q9P0M9 148 aaKnown RBP10.55□□□□□ -0.72
USP40-201ENST00000251722 CABIN1Q9Y6J0 2220 aa10.55□□□□□ -0.72
USP40-201ENST00000251722 TRBV20OR9-2A0A075B6H5 130 aa10.54□□□□□ -0.72
USP40-201ENST00000251722 PRTN3P24158 256 aa10.54□□□□□ -0.72
USP40-201ENST00000251722 RTBDNQ9BSG5 229 aaPredicted RBP10.54□□□□□ -0.72
USP40-201ENST00000251722 PLXNA3P51805 1871 aa10.54□□□□□ -0.72
USP40-201ENST00000251722 TDRD6O60522 2096 aaKnown RBP10.54□□□□□ -0.72
USP40-201ENST00000251722 C3orf79P0CE67 100 aa10.54□□□□□ -0.72
USP40-201ENST00000251722 IGFBP2P18065 325 aa10.54□□□□□ -0.72
USP40-201ENST00000251722 CENPWQ5EE01 88 aa10.54□□□□□ -0.72
USP40-201ENST00000251722 TRBV20-1A0A075B6N2 111 aa10.54□□□□□ -0.72
USP40-201ENST00000251722 FABP5P3A8MUU1 101 aa10.54□□□□□ -0.72
USP40-201ENST00000251722 B3GALT5-AS1P59052 145 aa10.54□□□□□ -0.72
USP40-201ENST00000251722 ZNF585BQ52M93 769 aa10.54□□□□□ -0.72
USP40-201ENST00000251722 RNF126Q9BV68 326 aa10.54□□□□□ -0.72
USP40-201ENST00000251722 J3QRE1 110 aa10.54□□□□□ -0.72
USP40-201ENST00000251722 SP5Q6BEB4 398 aaPredicted RBP10.54□□□□□ -0.72
USP40-201ENST00000251722 STPG4Q8N801 248 aa10.53□□□□□ -0.72
USP40-201ENST00000251722 PRELID3AQ96N28 172 aa10.53□□□□□ -0.72
USP40-201ENST00000251722 CCDC88CQ9P219 2028 aa10.53□□□□□ -0.72
USP40-201ENST00000251722 TRGV2A0A075B6R0 118 aa10.53□□□□□ -0.72
USP40-201ENST00000251722 TEX43Q6ZNM6 134 aa10.53□□□□□ -0.72
USP40-201ENST00000251722 DPH3Q96FX2 82 aa10.53□□□□□ -0.72
USP40-201ENST00000251722 RPP21Q9H633 154 aaKnown RBP10.53□□□□□ -0.72
USP40-201ENST00000251722 ANK1P16157 1881 aa10.53□□□□□ -0.72
USP40-201ENST00000251722 IGKV3-15P01624 115 aa10.53□□□□□ -0.72
USP40-201ENST00000251722 SRD5A1P18405 259 aa10.53□□□□□ -0.72
USP40-201ENST00000251722 EPDR1Q9UM22 224 aa10.53□□□□□ -0.72
USP40-201ENST00000251722 A0A1W2PRE2 83 aa10.53□□□□□ -0.72
USP40-201ENST00000251722 SLC25A48Q6ZT89 311 aaKnown RBP10.53□□□□□ -0.72
USP40-201ENST00000251722 PIP4P1Q86T03 277 aa10.53□□□□□ -0.72
USP40-201ENST00000251722 A0A1B0GUT8 65 aa10.53□□□□□ -0.72
USP40-201ENST00000251722 BEX4Q9NWD9 120 aaPredicted RBP10.53□□□□□ -0.72
USP40-201ENST00000251722 CHD5Q8TDI0 1954 aa10.52□□□□□ -0.72
USP40-201ENST00000251722 FAM74A4Q5TZK3 123 aa10.52□□□□□ -0.72
USP40-201ENST00000251722 BCL6BQ8N143 479 aaPredicted RBP10.52□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms