RNA–Protein interactions for RNA: ENST00000238146.8

DDX55-201, Transcript of DEAD-box helicase 55, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DDX55, Length 2,654 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-201ENST00000238146 SEM1Q6ZVN7 128 aa12.48□□□□□ -0.41
DDX55-201ENST00000238146 PGLYRP4Q96LB8 373 aa12.48□□□□□ -0.41
DDX55-201ENST00000238146 PRO3102Q9H379 93 aa12.48□□□□□ -0.41
DDX55-201ENST00000238146 PLCE1Q9P212 2302 aa12.48□□□□□ -0.41
DDX55-201ENST00000238146 ASPMQ8IZT6 3477 aa12.47□□□□□ -0.41
DDX55-201ENST00000238146 NKX2-8O15522 239 aa12.47□□□□□ -0.41
DDX55-201ENST00000238146 NUDT3O95989 172 aa12.47□□□□□ -0.41
DDX55-201ENST00000238146 RUSC1-AS1Q66K80 236 aa12.47□□□□□ -0.41
DDX55-201ENST00000238146 WASHC3Q9Y3C0 194 aa12.47□□□□□ -0.41
DDX55-201ENST00000238146 LINC00312Q9Y6C7 94 aa12.47□□□□□ -0.41
DDX55-201ENST00000238146 C19orf71A6NCJ1 209 aa12.47□□□□□ -0.41
DDX55-201ENST00000238146 TAX1BP3O14907 124 aa12.47□□□□□ -0.41
DDX55-201ENST00000238146 CT83Q5H943 113 aa12.47□□□□□ -0.41
DDX55-201ENST00000238146 SAPCD1Q5SSQ6 148 aa12.47□□□□□ -0.41
DDX55-201ENST00000238146 STXBP6Q8NFX7 210 aa12.47□□□□□ -0.41
DDX55-201ENST00000238146 C22orf46C9J442 243 aa12.46□□□□□ -0.41
DDX55-201ENST00000238146 CDX4O14627 284 aaPredicted RBP12.46□□□□□ -0.41
DDX55-201ENST00000238146 P01737 135 aa12.46□□□□□ -0.41
DDX55-201ENST00000238146 NBEAP1P0C6P0 100 aa12.46□□□□□ -0.41
DDX55-201ENST00000238146 SUB1P53999 127 aaKnown RBP eCLIP12.46□□□□□ -0.41
DDX55-201ENST00000238146 BVES-AS1Q5T3Y7 98 aa12.46□□□□□ -0.41
DDX55-201ENST00000238146 ZCCHC24Q8N2G6 241 aaKnown RBP12.46□□□□□ -0.41
DDX55-201ENST00000238146 PERPQ96FX8 193 aa12.46□□□□□ -0.41
DDX55-201ENST00000238146 SOX21Q9Y651 276 aaPredicted RBP12.46□□□□□ -0.41
DDX55-201ENST00000238146 TNRC18O15417 2968 aaPredicted RBP12.46□□□□□ -0.41
DDX55-201ENST00000238146 LTAP01374 205 aa12.46□□□□□ -0.41
DDX55-201ENST00000238146 ZNF137PP52743 207 aa12.46□□□□□ -0.41
DDX55-201ENST00000238146 RHOGP84095 191 aa12.46□□□□□ -0.41
DDX55-201ENST00000238146 SRSF6Q13247 344 aaKnown RBP12.46□□□□□ -0.41
DDX55-201ENST00000238146 DIAPH2-AS1Q14236 149 aa12.46□□□□□ -0.41
DDX55-201ENST00000238146 TIMM23BQ5SRD1 257 aa12.46□□□□□ -0.41
DDX55-201ENST00000238146 SLC25A34Q6PIV7 304 aa12.46□□□□□ -0.41
DDX55-201ENST00000238146 ZNF474Q6S9Z5 364 aaPredicted RBP12.46□□□□□ -0.41
DDX55-201ENST00000238146 OR4C13Q8NGP0 309 aa12.46□□□□□ -0.41
DDX55-201ENST00000238146 OR1B1Q8NGR6 318 aa12.46□□□□□ -0.41
DDX55-201ENST00000238146 CCL3L1P16619 93 aa12.45□□□□□ -0.42
DDX55-201ENST00000238146 WT1P19544 449 aaPredicted RBP12.45□□□□□ -0.42
DDX55-201ENST00000238146 ZNF492Q9P255 531 aa12.45□□□□□ -0.42
DDX55-201ENST00000238146 RBPMS2Q6ZRY4 209 aaKnown RBP12.45□□□□□ -0.42
DDX55-201ENST00000238146 VSTM2AQ8TAG5 236 aa12.45□□□□□ -0.42
DDX55-201ENST00000238146 TMEM191AQ9H0A3 160 aa12.45□□□□□ -0.42
DDX55-201ENST00000238146 SSUH2Q9Y2M2 353 aa12.45□□□□□ -0.42
DDX55-201ENST00000238146 PLXNB1O43157 2135 aa12.45□□□□□ -0.42
DDX55-201ENST00000238146 IGLV2-23P01705 113 aa12.45□□□□□ -0.42
DDX55-201ENST00000238146 ZNF138P52744 262 aa12.45□□□□□ -0.42
DDX55-201ENST00000238146 C5orf17Q8NAS9 161 aa12.45□□□□□ -0.42
DDX55-201ENST00000238146 OR4A5Q8NH83 315 aa12.45□□□□□ -0.42
DDX55-201ENST00000238146 FMC1Q96HJ9 113 aa12.45□□□□□ -0.42
DDX55-201ENST00000238146 LOC102724200A0A096LPH7 203 aaPredicted RBP12.44□□□□□ -0.42
DDX55-201ENST00000238146 TRAV17A0A0B4J275 112 aa12.44□□□□□ -0.42
DDX55-201ENST00000238146 A0A1W2PPI3 338 aa12.44□□□□□ -0.42
DDX55-201ENST00000238146 H3BTX0 84 aa12.44□□□□□ -0.42
DDX55-201ENST00000238146 TEX36Q5VZQ5 186 aa12.44□□□□□ -0.42
DDX55-201ENST00000238146 DEFB125Q8N687 156 aa12.44□□□□□ -0.42
DDX55-201ENST00000238146 NDFIP1Q9BT67 221 aa12.44□□□□□ -0.42
DDX55-201ENST00000238146 MCRIP2Q9BUT9 160 aaKnown RBP12.44□□□□□ -0.42
DDX55-201ENST00000238146 GFRA4Q9GZZ7 299 aa12.44□□□□□ -0.42
DDX55-201ENST00000238146 MUC21A0A0G2JKD1 596 aa12.44□□□□□ -0.42
DDX55-201ENST00000238146 MUC21A0A140T8X8 626 aa12.44□□□□□ -0.42
DDX55-201ENST00000238146 TCRAP04437 139 aa12.44□□□□□ -0.42
DDX55-201ENST00000238146 MUC21Q5SSG8 566 aa12.44□□□□□ -0.42
DDX55-201ENST00000238146 SCRT2Q9NQ03 307 aa12.44□□□□□ -0.42
DDX55-201ENST00000238146 DYSFO75923 2080 aa12.44□□□□□ -0.42
DDX55-201ENST00000238146 MBD3L4A6NDZ8 208 aaPredicted RBP12.43□□□□□ -0.42
DDX55-201ENST00000238146 MBD3L3A6NE82 208 aaPredicted RBP12.43□□□□□ -0.42
DDX55-201ENST00000238146 OR2T8A6NH00 312 aa12.43□□□□□ -0.42
DDX55-201ENST00000238146 MBD3L5A6NJ08 208 aaPredicted RBP12.43□□□□□ -0.42
DDX55-201ENST00000238146 LIPFP07098 398 aa12.43□□□□□ -0.42
DDX55-201ENST00000238146 GP9P14770 177 aa12.43□□□□□ -0.42
DDX55-201ENST00000238146 IGFL2Q6UWQ7 119 aa12.43□□□□□ -0.42
DDX55-201ENST00000238146 MBD3L2Q8NHZ7 208 aaPredicted RBP12.43□□□□□ -0.42
DDX55-201ENST00000238146 DAZAP1Q96EP5 407 aaKnown RBP12.43□□□□□ -0.42
DDX55-201ENST00000238146 TPSG1Q9NRR2 321 aa12.43□□□□□ -0.42
DDX55-201ENST00000238146 ZNF835Q9Y2P0 537 aa12.43□□□□□ -0.42
DDX55-201ENST00000238146 HSBP1L1C9JCN9 74 aa12.43□□□□□ -0.42
DDX55-201ENST00000238146 CRYGCP07315 174 aa12.43□□□□□ -0.42
DDX55-201ENST00000238146 OR5AL1P0C617 328 aa12.43□□□□□ -0.42
DDX55-201ENST00000238146 RNF151Q2KHN1 245 aa12.43□□□□□ -0.42
DDX55-201ENST00000238146 Q9H3A6 140 aa12.43□□□□□ -0.42
DDX55-201ENST00000238146 CHEK1O14757 476 aa12.42□□□□□ -0.42
DDX55-201ENST00000238146 FCN3O75636 299 aa12.42□□□□□ -0.42
DDX55-201ENST00000238146 FAM87AP0C7U9 286 aa12.42□□□□□ -0.42
DDX55-201ENST00000238146 HCP5Q6MZN7 132 aa12.42□□□□□ -0.42
DDX55-201ENST00000238146 PET117Q6UWS5 81 aa12.42□□□□□ -0.42
DDX55-201ENST00000238146 C12orf54Q6X4T0 127 aa12.42□□□□□ -0.42
DDX55-201ENST00000238146 MAP1LC3CQ9BXW4 147 aa12.42□□□□□ -0.42
DDX55-201ENST00000238146 NPIPB6E9PJ23 425 aa12.42□□□□□ -0.42
DDX55-201ENST00000238146 SLC25A17O43808 307 aa12.42□□□□□ -0.42
DDX55-201ENST00000238146 ARL6IP6Q8N6S5 226 aa12.42□□□□□ -0.42
DDX55-201ENST00000238146 OR10X1Q8NGY0 326 aa12.42□□□□□ -0.42
DDX55-201ENST00000238146 RITA1Q96K30 269 aa12.42□□□□□ -0.42
DDX55-201ENST00000238146 FAM231BA6NCW3 169 aa12.41□□□□□ -0.42
DDX55-201ENST00000238146 APOHP02749 345 aaPredicted RBP12.41□□□□□ -0.42
DDX55-201ENST00000238146 MEF2CQ06413 473 aaPredicted RBP12.41□□□□□ -0.42
DDX55-201ENST00000238146 MRGPRG-AS1Q2M3A8 158 aa12.41□□□□□ -0.42
DDX55-201ENST00000238146 TMEM200BQ69YZ2 307 aa12.41□□□□□ -0.42
DDX55-201ENST00000238146 C22orf34Q6ZV56 151 aa12.41□□□□□ -0.42
DDX55-201ENST00000238146 TRGV9Q99603 122 aa12.41□□□□□ -0.42
DDX55-201ENST00000238146 TRAV8-1A0A0A6YYK1 113 aa12.41□□□□□ -0.42
DDX55-201ENST00000238146 CCL8P80075 99 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms