RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 LAMTOR3Q9UHA4 124 aa5.12□□□□□ -1.59
SCN1A-217ENST00000637988 F11RQ9Y624 299 aaKnown RBP5.12□□□□□ -1.59
SCN1A-217ENST00000637988 GCM2O75603 506 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-217ENST00000637988 DEFB130BP0DP73 79 aa5.12□□□□□ -1.59
SCN1A-217ENST00000637988 DEFB130AP0DP74 79 aa5.12□□□□□ -1.59
SCN1A-217ENST00000637988 PSG7Q13046 419 aa5.12□□□□□ -1.59
SCN1A-217ENST00000637988 SLIRPQ9GZT3 109 aaKnown RBP5.12□□□□□ -1.59
SCN1A-217ENST00000637988 A0A1B0GTL3 188 aa5.12□□□□□ -1.59
SCN1A-217ENST00000637988 PAX2Q02962 417 aa5.12□□□□□ -1.59
SCN1A-217ENST00000637988 ORMDL2Q53FV1 153 aa5.12□□□□□ -1.59
SCN1A-217ENST00000637988 ZNF362Q5T0B9 420 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-217ENST00000637988 SUMO4Q6EEV6 95 aa5.12□□□□□ -1.59
SCN1A-217ENST00000637988 OR8D4Q8NGM9 314 aa5.12□□□□□ -1.59
SCN1A-217ENST00000637988 C1QTNF5Q9BXJ0 243 aa5.12□□□□□ -1.59
SCN1A-217ENST00000637988 MRPL18Q9H0U6 180 aaKnown RBP5.12□□□□□ -1.59
SCN1A-217ENST00000637988 IGKV1D-42A0A075B6H8 117 aa5.12□□□□□ -1.59
SCN1A-217ENST00000637988 IGHV2-26A0A0B4J1V2 119 aa5.12□□□□□ -1.59
SCN1A-217ENST00000637988 IGKV1-8A0A0C4DH67 115 aa5.12□□□□□ -1.59
SCN1A-217ENST00000637988 ZIC3O60481 467 aa5.12□□□□□ -1.59
SCN1A-217ENST00000637988 AWAT1Q58HT5 328 aa5.12□□□□□ -1.59
SCN1A-217ENST00000637988 KLF12Q9Y4X4 402 aa5.12□□□□□ -1.59
SCN1A-217ENST00000637988 NDUFA3O95167 84 aa5.12□□□□□ -1.59
SCN1A-217ENST00000637988 CA1P00915 261 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-217ENST00000637988 PLP1P60201 277 aa5.12□□□□□ -1.59
SCN1A-217ENST00000637988 TSSC4Q9Y5U2 329 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-217ENST00000637988 EVI2AP22794 236 aa5.12□□□□□ -1.59
SCN1A-217ENST00000637988 IMMP1LQ96LU5 166 aa5.12□□□□□ -1.59
SCN1A-217ENST00000637988 Q96M66 194 aa5.12□□□□□ -1.59
SCN1A-217ENST00000637988 ALX4Q9H161 411 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-217ENST00000637988 TANC1Q9C0D5 1861 aa5.12□□□□□ -1.59
SCN1A-217ENST00000637988 C1QL1O75973 258 aa5.11□□□□□ -1.59
SCN1A-217ENST00000637988 SPATA45Q537H7 98 aa5.11□□□□□ -1.59
SCN1A-217ENST00000637988 ZNF660Q6AZW8 331 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-217ENST00000637988 ZNF525Q8N782 197 aa5.11□□□□□ -1.59
SCN1A-217ENST00000637988 IGHV1-18A0A0C4DH31 117 aa5.11□□□□□ -1.59
SCN1A-217ENST00000637988 PAX4O43316 350 aa5.11□□□□□ -1.59
SCN1A-217ENST00000637988 CELA3BP08861 270 aa5.11□□□□□ -1.59
SCN1A-217ENST00000637988 ZNF25P17030 456 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-217ENST00000637988 ZFP36L1Q07352 338 aaKnown RBP5.11□□□□□ -1.59
SCN1A-217ENST00000637988 ZNF345Q14585 488 aa5.11□□□□□ -1.59
SCN1A-217ENST00000637988 RBMY1FQ15415 496 aaKnown RBP5.11□□□□□ -1.59
SCN1A-217ENST00000637988 ISOC2Q96AB3 205 aa5.11□□□□□ -1.59
SCN1A-217ENST00000637988 GPR146Q96CH1 333 aa5.11□□□□□ -1.59
SCN1A-217ENST00000637988 IGHV3OR16-8A0A075B7F1 116 aa5.11□□□□□ -1.59
SCN1A-217ENST00000637988 SAA2-SAA4A0A096LPE2 208 aa5.11□□□□□ -1.59
SCN1A-217ENST00000637988 ZNHIT1O43257 154 aa5.11□□□□□ -1.59
SCN1A-217ENST00000637988 SAA2P0DJI9 122 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-217ENST00000637988 ZNF79Q15937 498 aa5.11□□□□□ -1.59
SCN1A-217ENST00000637988 MRPL14Q6P1L8 145 aaKnown RBP5.11□□□□□ -1.59
SCN1A-217ENST00000637988 NRTNQ99748 197 aa5.11□□□□□ -1.59
SCN1A-217ENST00000637988 A0A0G2JMM0 328 aa5.11□□□□□ -1.59
SCN1A-217ENST00000637988 A0A1W2PPB8 328 aa5.11□□□□□ -1.59
SCN1A-217ENST00000637988 A0A1W2PRS3 328 aa5.11□□□□□ -1.59
SCN1A-217ENST00000637988 KIR3DP1A8MWS1 328 aa5.11□□□□□ -1.59
SCN1A-217ENST00000637988 SLAQ13239 276 aa5.11□□□□□ -1.59
SCN1A-217ENST00000637988 CENPWQ5EE01 88 aa5.11□□□□□ -1.59
SCN1A-217ENST00000637988 RASL11AQ6T310 242 aa5.11□□□□□ -1.59
SCN1A-217ENST00000637988 BRD3OSQ6XYD6 125 aa5.11□□□□□ -1.59
SCN1A-217ENST00000637988 ST6GALNAC6Q969X2 333 aa5.11□□□□□ -1.59
SCN1A-217ENST00000637988 BPESC1Q9GZL8 116 aa5.11□□□□□ -1.59
SCN1A-217ENST00000637988 V9GYH0 126 aa5.11□□□□□ -1.59
SCN1A-217ENST00000637988 CD24P25063 80 aa5.11□□□□□ -1.59
SCN1A-217ENST00000637988 FAM201AQ5SY85 155 aa5.11□□□□□ -1.59
SCN1A-217ENST00000637988 C9orf66Q5T8R8 295 aa5.11□□□□□ -1.59
SCN1A-217ENST00000637988 MTURNQ8N3F0 131 aa5.11□□□□□ -1.59
SCN1A-217ENST00000637988 SDHCQ99643 169 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-217ENST00000637988 RARRES2Q99969 163 aa5.11□□□□□ -1.59
SCN1A-217ENST00000637988 LYNX1G3V0Z9 82 aa5.11□□□□□ -1.59
SCN1A-217ENST00000637988 LYNX1P0DP58 116 aa5.11□□□□□ -1.59
SCN1A-217ENST00000637988 RIPPLY3P57055 190 aa5.11□□□□□ -1.59
SCN1A-217ENST00000637988 EGR4Q05215 589 aa5.11□□□□□ -1.59
SCN1A-217ENST00000637988 APOHP02749 345 aaPredicted RBP5.1□□□□□ -1.59
SCN1A-217ENST00000637988 IGFBP2P18065 325 aa5.1□□□□□ -1.59
SCN1A-217ENST00000637988 GCHFRP30047 84 aa5.1□□□□□ -1.59
SCN1A-217ENST00000637988 UBE2E2Q96LR5 201 aa5.1□□□□□ -1.59
SCN1A-217ENST00000637988 RNF5Q99942 180 aa5.1□□□□□ -1.59
SCN1A-217ENST00000637988 PLSCR4Q9NRQ2 329 aa5.1□□□□□ -1.59
SCN1A-217ENST00000637988 TMEM178BH3BS89 294 aa5.1□□□□□ -1.59
SCN1A-217ENST00000637988 ALX3O95076 343 aa5.1□□□□□ -1.59
SCN1A-217ENST00000637988 LINC00477Q96M19 166 aa5.1□□□□□ -1.59
SCN1A-217ENST00000637988 C18orf15Q96N68 181 aa5.1□□□□□ -1.59
SCN1A-217ENST00000637988 SPAG8Q99932 426 aaPredicted RBP5.1□□□□□ -1.59
SCN1A-217ENST00000637988 MBNL3Q9NUK0 354 aaKnown RBP5.1□□□□□ -1.59
SCN1A-217ENST00000637988 VWC2Q2TAL6 325 aa5.1□□□□□ -1.59
SCN1A-217ENST00000637988 TPTE2P1Q5T6R2 138 aa5.1□□□□□ -1.59
SCN1A-217ENST00000637988 C8orf82Q6P1X6 216 aaPredicted RBP5.1□□□□□ -1.59
SCN1A-217ENST00000637988 SPOCK3Q9BQ16 436 aa5.1□□□□□ -1.59
SCN1A-217ENST00000637988 LEPROTO15243 131 aa5.1□□□□□ -1.59
SCN1A-217ENST00000637988 RAMP1O60894 148 aa5.1□□□□□ -1.59
SCN1A-217ENST00000637988 C1QL2Q7Z5L3 287 aa5.1□□□□□ -1.59
SCN1A-217ENST00000637988 MARVELD1Q9BSK0 173 aa5.1□□□□□ -1.59
SCN1A-217ENST00000637988 RPP21Q9H633 154 aaKnown RBP5.1□□□□□ -1.59
SCN1A-217ENST00000637988 PLXNA3P51805 1871 aa5.1□□□□□ -1.59
SCN1A-217ENST00000637988 SIGLEC5O15389 551 aa5.1□□□□□ -1.59
SCN1A-217ENST00000637988 C1QTNF9P0C862 333 aa5.1□□□□□ -1.59
SCN1A-217ENST00000637988 UBE2BP63146 152 aa5.1□□□□□ -1.59
SCN1A-217ENST00000637988 CR1LQ2VPA4 569 aa5.1□□□□□ -1.59
SCN1A-217ENST00000637988 TRAV12-3A0A0B4J271 114 aa5.1□□□□□ -1.59
SCN1A-217ENST00000637988 H0YL77 283 aa5.1□□□□□ -1.59
SCN1A-217ENST00000637988 CCL3L1P16619 93 aa5.1□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms