RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 LHFPL1Q86WI0 220 aa13.94□□□□□ -0.18
CLN3-262ENST00000637699 INS-IGF2F8WCM5 200 aa13.93□□□□□ -0.18
CLN3-262ENST00000637699 PI3P19957 117 aa13.93□□□□□ -0.18
CLN3-262ENST00000637699 NPY1RP25929 384 aa13.93□□□□□ -0.18
CLN3-262ENST00000637699 HOXA1P49639 335 aaPredicted RBP13.93□□□□□ -0.18
CLN3-262ENST00000637699 AKR1C2P52895 323 aa13.93□□□□□ -0.18
CLN3-262ENST00000637699 TMBIM6P55061 237 aa13.93□□□□□ -0.18
CLN3-262ENST00000637699 OR4X1Q8NH49 305 aa13.93□□□□□ -0.18
CLN3-262ENST00000637699 DYNC2LI1Q8TCX1 351 aa13.93□□□□□ -0.18
CLN3-262ENST00000637699 RAB2BQ8WUD1 216 aa13.93□□□□□ -0.18
CLN3-262ENST00000637699 PDCD10Q9BUL8 212 aa13.93□□□□□ -0.18
CLN3-262ENST00000637699 XCL2Q9UBD3 114 aa13.93□□□□□ -0.18
CLN3-262ENST00000637699 HELTA6NFD8 242 aa13.92□□□□□ -0.18
CLN3-262ENST00000637699 SCGB2A1O75556 95 aa13.92□□□□□ -0.18
CLN3-262ENST00000637699 IGKV1-17P01599 117 aa13.92□□□□□ -0.18
CLN3-262ENST00000637699 PGAM2P15259 253 aa13.92□□□□□ -0.18
CLN3-262ENST00000637699 EIF2B2P49770 351 aaKnown RBP13.92□□□□□ -0.18
CLN3-262ENST00000637699 TMEM229BQ8NBD8 167 aa13.92□□□□□ -0.18
CLN3-262ENST00000637699 C15orf40Q8WUR7 153 aa13.92□□□□□ -0.18
CLN3-262ENST00000637699 IGLV2-18A0A075B6J9 118 aa13.91□□□□□ -0.18
CLN3-262ENST00000637699 GABARAPH6UMI1 98 aa13.91□□□□□ -0.18
CLN3-262ENST00000637699 IFNA10P01566 189 aa13.91□□□□□ -0.18
CLN3-262ENST00000637699 CD74P04233 296 aa13.91□□□□□ -0.18
CLN3-262ENST00000637699 TBPP20226 339 aa13.91□□□□□ -0.18
CLN3-262ENST00000637699 LGALS9BQ3B8N2 356 aa13.91□□□□□ -0.18
CLN3-262ENST00000637699 ARRDC1Q8N5I2 433 aa13.91□□□□□ -0.18
CLN3-262ENST00000637699 TP53RKQ96S44 253 aa13.91□□□□□ -0.18
CLN3-262ENST00000637699 C1QTNF4Q9BXJ3 329 aa13.91□□□□□ -0.18
CLN3-262ENST00000637699 ENY2Q9NPA8 101 aa13.91□□□□□ -0.18
CLN3-262ENST00000637699 P0C879 139 aa13.9□□□□□ -0.18
CLN3-262ENST00000637699 RPL5P46777 297 aaKnown RBP13.9□□□□□ -0.18
CLN3-262ENST00000637699 PIGPP57054 158 aa13.9□□□□□ -0.18
CLN3-262ENST00000637699 RND3P61587 244 aa13.9□□□□□ -0.18
CLN3-262ENST00000637699 NUTF2P61970 127 aaKnown RBP13.9□□□□□ -0.18
CLN3-262ENST00000637699 C16orf54Q6UWD8 224 aa13.9□□□□□ -0.18
CLN3-262ENST00000637699 ZNF486Q96H40 463 aaPredicted RBP13.9□□□□□ -0.18
CLN3-262ENST00000637699 BCL7BQ9BQE9 202 aa13.9□□□□□ -0.18
CLN3-262ENST00000637699 CCDC59Q9P031 241 aaKnown RBP13.9□□□□□ -0.18
CLN3-262ENST00000637699 U3KQE9 123 aa13.9□□□□□ -0.18
CLN3-262ENST00000637699 TRAV30A0A087WSZ9 112 aa13.89□□□□□ -0.19
CLN3-262ENST00000637699 H3BMQ9 156 aa13.89□□□□□ -0.19
CLN3-262ENST00000637699 RAB3DO95716 219 aa13.89□□□□□ -0.19
CLN3-262ENST00000637699 IFNA21P01568 189 aa13.89□□□□□ -0.19
CLN3-262ENST00000637699 AP2S1P53680 142 aaPredicted RBP13.89□□□□□ -0.19
CLN3-262ENST00000637699 EMP1P54849 157 aa13.89□□□□□ -0.19
CLN3-262ENST00000637699 TAS2R19P59542 299 aa13.89□□□□□ -0.19
CLN3-262ENST00000637699 FAAP20Q6NZ36 180 aa13.89□□□□□ -0.19
CLN3-262ENST00000637699 STEAP1BQ6NZ63 245 aa13.89□□□□□ -0.19
CLN3-262ENST00000637699 UBE2DNLQ8IWF7 75 aa13.89□□□□□ -0.19
CLN3-262ENST00000637699 TERB2Q8NHR7 220 aa13.89□□□□□ -0.19
CLN3-262ENST00000637699 GLMPQ8WWB7 406 aa13.89□□□□□ -0.19
CLN3-262ENST00000637699 DIRAS2Q96HU8 199 aa13.89□□□□□ -0.19
CLN3-262ENST00000637699 FAM90A26D6RGX4 464 aa13.88□□□□□ -0.19
CLN3-262ENST00000637699 ATG12O94817 140 aa13.88□□□□□ -0.19
CLN3-262ENST00000637699 HNRNPCP07910 306 aaKnown RBP eCLIP13.88□□□□□ -0.19
CLN3-262ENST00000637699 SNRPD3P62318 126 aaKnown RBP13.88□□□□□ -0.19
CLN3-262ENST00000637699 MRPS10P82664 201 aaKnown RBP13.88□□□□□ -0.19
CLN3-262ENST00000637699 SCGB2B2Q4G0G5 96 aa13.88□□□□□ -0.19
CLN3-262ENST00000637699 OR13C8Q8NGS7 320 aa13.88□□□□□ -0.19
CLN3-262ENST00000637699 Q8WTZ3 238 aa13.88□□□□□ -0.19
CLN3-262ENST00000637699 SMIM4Q8WVI0 70 aa13.88□□□□□ -0.19
CLN3-262ENST00000637699 KRTAP4-5Q9BYR2 181 aa13.88□□□□□ -0.19
CLN3-262ENST00000637699 HSPG2P98160 4391 aa13.87□□□□□ -0.19
CLN3-262ENST00000637699 C3orf85A0A1B0GTC6 90 aa13.87□□□□□ -0.19
CLN3-262ENST00000637699 H3BMM0 161 aa13.87□□□□□ -0.19
CLN3-262ENST00000637699 SPART-AS1P0CW21 52 aa13.87□□□□□ -0.19
CLN3-262ENST00000637699 DHODHQ02127 395 aa13.87□□□□□ -0.19
CLN3-262ENST00000637699 SSBP1Q04837 148 aaKnown RBP13.87□□□□□ -0.19
CLN3-262ENST00000637699 IL18Q14116 193 aa13.87□□□□□ -0.19
CLN3-262ENST00000637699 TRIM16LQ309B1 348 aa13.87□□□□□ -0.19
CLN3-262ENST00000637699 SP6Q3SY56 376 aa13.87□□□□□ -0.19
CLN3-262ENST00000637699 ZNF575Q86XF7 245 aa13.87□□□□□ -0.19
CLN3-262ENST00000637699 MARCH1Q8TCQ1 289 aa13.87□□□□□ -0.19
CLN3-262ENST00000637699 SLIRPQ9GZT3 109 aaKnown RBP13.87□□□□□ -0.19
CLN3-262ENST00000637699 A0A0G2JRQ6 117 aa13.86□□□□□ -0.19
CLN3-262ENST00000637699 RPS10-NUDT3A0A1W2PQS6 291 aa13.86□□□□□ -0.19
CLN3-262ENST00000637699 CTDSPLO15194 276 aa13.86□□□□□ -0.19
CLN3-262ENST00000637699 IGLC1P0CG04 106 aa13.86□□□□□ -0.19
CLN3-262ENST00000637699 RND2P52198 227 aa13.86□□□□□ -0.19
CLN3-262ENST00000637699 BSXQ3C1V8 233 aa13.86□□□□□ -0.19
CLN3-262ENST00000637699 OR1S2Q8NGQ3 325 aa13.86□□□□□ -0.19
CLN3-262ENST00000637699 RNASE11Q8TAA1 199 aaKnown RBP13.86□□□□□ -0.19
CLN3-262ENST00000637699 ZFAND1Q8TCF1 268 aa13.86□□□□□ -0.19
CLN3-262ENST00000637699 RRNAD1Q96FB5 475 aaKnown RBP13.86□□□□□ -0.19
CLN3-262ENST00000637699 IGHV3OR16-12A0A075B7B8 117 aa13.85□□□□□ -0.19
CLN3-262ENST00000637699 IGKV3-20P01619 116 aa13.85□□□□□ -0.19
CLN3-262ENST00000637699 OR10J1P30954 320 aa13.85□□□□□ -0.19
CLN3-262ENST00000637699 FXYD7P58549 80 aa13.85□□□□□ -0.19
CLN3-262ENST00000637699 USF2Q15853 346 aaPredicted RBP13.85□□□□□ -0.19
CLN3-262ENST00000637699 PRSS54Q6PEW0 395 aa13.85□□□□□ -0.19
CLN3-262ENST00000637699 Q6ZR54 194 aa13.85□□□□□ -0.19
CLN3-262ENST00000637699 Q6ZRM9 215 aa13.85□□□□□ -0.19
CLN3-262ENST00000637699 NRN1Q9NPD7 142 aa13.85□□□□□ -0.19
CLN3-262ENST00000637699 COPZ2Q9P299 210 aa13.85□□□□□ -0.19
CLN3-262ENST00000637699 IL4P05112 153 aa13.84□□□□□ -0.19
CLN3-262ENST00000637699 TNFSF8P32971 234 aa13.84□□□□□ -0.19
CLN3-262ENST00000637699 HTR2BP41595 481 aa13.84□□□□□ -0.19
CLN3-262ENST00000637699 YPEL3P61236 119 aaPredicted RBP13.84□□□□□ -0.19
CLN3-262ENST00000637699 MEF2DQ14814 521 aa13.84□□□□□ -0.19
CLN3-262ENST00000637699 ZNF705AQ6ZN79 300 aaPredicted RBP13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms