RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 BRI3O95415 125 aa14.39□□□□□ -0.11
CLN3-254ENST00000637050 H2AFB1P0C5Y9 115 aa14.39□□□□□ -0.11
CLN3-254ENST00000637050 IGLC1P0CG04 106 aa14.39□□□□□ -0.11
CLN3-254ENST00000637050 SELENOTP62341 195 aa14.39□□□□□ -0.11
CLN3-254ENST00000637050 RHOGP84095 191 aa14.39□□□□□ -0.11
CLN3-254ENST00000637050 ZNF90Q03938 601 aa14.39□□□□□ -0.11
CLN3-254ENST00000637050 GCSAMLQ5JQS6 135 aa14.39□□□□□ -0.11
CLN3-254ENST00000637050 NECAP1Q8NC96 275 aa14.39□□□□□ -0.11
CLN3-254ENST00000637050 VN1R17PQ8TDU5 208 aa14.39□□□□□ -0.11
CLN3-254ENST00000637050 CITED4Q96RK1 184 aa14.39□□□□□ -0.11
CLN3-254ENST00000637050 PRSS22Q9GZN4 317 aa14.39□□□□□ -0.11
CLN3-254ENST00000637050 ZNF355PQ9NSJ1 428 aa14.39□□□□□ -0.11
CLN3-254ENST00000637050 TLN2Q9Y4G6 2542 aa14.39□□□□□ -0.11
CLN3-254ENST00000637050 GATA2P23769 480 aaPredicted RBP14.39□□□□□ -0.11
CLN3-254ENST00000637050 MFAP4P55083 255 aa14.39□□□□□ -0.11
CLN3-254ENST00000637050 MBD3L1Q8WWY6 194 aa14.39□□□□□ -0.11
CLN3-254ENST00000637050 DUX5Q96PT3 197 aa14.39□□□□□ -0.11
CLN3-254ENST00000637050 GSX1Q9H4S2 264 aaPredicted RBP14.39□□□□□ -0.11
CLN3-254ENST00000637050 ZNF702PQ9H963 129 aa14.39□□□□□ -0.11
CLN3-254ENST00000637050 C21orf62Q9NYP8 219 aa14.39□□□□□ -0.11
CLN3-254ENST00000637050 CDC42EP3Q9UKI2 254 aa14.39□□□□□ -0.11
CLN3-254ENST00000637050 TRAV1-1A0A0B4J248 108 aa14.38□□□□□ -0.11
CLN3-254ENST00000637050 DNAJC9-AS1A6NH13 148 aa14.38□□□□□ -0.11
CLN3-254ENST00000637050 SEC14L6B5MCN3 397 aa14.38□□□□□ -0.11
CLN3-254ENST00000637050 F8W735 103 aaPredicted RBP14.38□□□□□ -0.11
CLN3-254ENST00000637050 H3BUA1 57 aa14.38□□□□□ -0.11
CLN3-254ENST00000637050 NPBWR1P48145 328 aa14.38□□□□□ -0.11
CLN3-254ENST00000637050 DEFA5Q01523 94 aa14.38□□□□□ -0.11
CLN3-254ENST00000637050 CFHR3Q02985 330 aa14.38□□□□□ -0.11
CLN3-254ENST00000637050 SPSB3Q6PJ21 355 aa14.38□□□□□ -0.11
CLN3-254ENST00000637050 SSX7Q7RTT5 188 aa14.38□□□□□ -0.11
CLN3-254ENST00000637050 S4R3C0 116 aa14.38□□□□□ -0.11
CLN3-254ENST00000637050 NUDT19A8MXV4 375 aa14.37□□□□□ -0.11
CLN3-254ENST00000637050 SRD5A1P18405 259 aa14.37□□□□□ -0.11
CLN3-254ENST00000637050 FCGR2BP31994 310 aaPredicted RBP14.37□□□□□ -0.11
CLN3-254ENST00000637050 C15orf32Q32M92 178 aa14.37□□□□□ -0.11
CLN3-254ENST00000637050 IL34Q6ZMJ4 242 aa14.37□□□□□ -0.11
CLN3-254ENST00000637050 SFT2D1Q8WV19 159 aa14.37□□□□□ -0.11
CLN3-254ENST00000637050 MARC2Q969Z3 335 aa14.37□□□□□ -0.11
CLN3-254ENST00000637050 TXN2Q99757 166 aa14.37□□□□□ -0.11
CLN3-254ENST00000637050 ACTR3CQ9C0K3 210 aaPredicted RBP14.37□□□□□ -0.11
CLN3-254ENST00000637050 CTXND1A0A1B0GTU2 59 aa14.36□□□□□ -0.11
CLN3-254ENST00000637050 IGKV1-17P01599 117 aa14.36□□□□□ -0.11
CLN3-254ENST00000637050 IGLV1-40P01703 118 aa14.36□□□□□ -0.11
CLN3-254ENST00000637050 S100A12P80511 92 aa14.36□□□□□ -0.11
CLN3-254ENST00000637050 TMEM95Q3KNT9 176 aa14.36□□□□□ -0.11
CLN3-254ENST00000637050 Q8N2B8 174 aa14.36□□□□□ -0.11
CLN3-254ENST00000637050 MS4A10Q96PG2 267 aa14.36□□□□□ -0.11
CLN3-254ENST00000637050 SLC25A22Q9H936 323 aa14.36□□□□□ -0.11
CLN3-254ENST00000637050 TRAV30A0A087WSZ9 112 aa14.36□□□□□ -0.11
CLN3-254ENST00000637050 FAM223BA6NKX1 122 aa14.36□□□□□ -0.11
CLN3-254ENST00000637050 CLDN34H7C241 214 aa14.36□□□□□ -0.11
CLN3-254ENST00000637050 HBE1P02100 147 aa14.36□□□□□ -0.11
CLN3-254ENST00000637050 CDC34P49427 236 aaPredicted RBP14.36□□□□□ -0.11
CLN3-254ENST00000637050 FAM223AQ8IWN6 122 aa14.36□□□□□ -0.11
CLN3-254ENST00000637050 EIF4E3Q8N5X7 224 aaKnown RBP14.36□□□□□ -0.11
CLN3-254ENST00000637050 ZNF502Q8TBZ5 544 aa14.36□□□□□ -0.11
CLN3-254ENST00000637050 RAB24Q969Q5 203 aa14.36□□□□□ -0.11
CLN3-254ENST00000637050 ESM1Q9NQ30 184 aa14.36□□□□□ -0.11
CLN3-254ENST00000637050 PSMB11A5LHX3 300 aa14.35□□□□□ -0.11
CLN3-254ENST00000637050 MAP1LC3B2A6NCE7 125 aa14.35□□□□□ -0.11
CLN3-254ENST00000637050 GNG7O60262 68 aa14.35□□□□□ -0.11
CLN3-254ENST00000637050 TIGITQ495A1 244 aa14.35□□□□□ -0.11
CLN3-254ENST00000637050 LCN15Q6UWW0 184 aa14.35□□□□□ -0.11
CLN3-254ENST00000637050 COMMD1Q8N668 190 aa14.35□□□□□ -0.11
CLN3-254ENST00000637050 C19orf24Q9BVV8 132 aa14.35□□□□□ -0.11
CLN3-254ENST00000637050 MAP1LC3BQ9GZQ8 125 aa14.35□□□□□ -0.11
CLN3-254ENST00000637050 RAB19A4D1S5 217 aa14.34□□□□□ -0.11
CLN3-254ENST00000637050 TRGV3P03979 118 aa14.34□□□□□ -0.11
CLN3-254ENST00000637050 CCL20P78556 96 aa14.34□□□□□ -0.11
CLN3-254ENST00000637050 Q56UQ5 140 aa14.34□□□□□ -0.11
CLN3-254ENST00000637050 SONP18583 2426 aaKnown RBP14.34□□□□□ -0.11
CLN3-254ENST00000637050 A0A1B0GV50 99 aa14.33□□□□□ -0.11
CLN3-254ENST00000637050 A0A1W2PPV4 95 aa14.33□□□□□ -0.11
CLN3-254ENST00000637050 IGHV3-23P01764 117 aa14.33□□□□□ -0.11
CLN3-254ENST00000637050 FABP1P07148 127 aa14.33□□□□□ -0.11
CLN3-254ENST00000637050 ATF4P18848 351 aaPredicted RBP14.33□□□□□ -0.11
CLN3-254ENST00000637050 PLP1P60201 277 aa14.33□□□□□ -0.11
CLN3-254ENST00000637050 RHOBP62745 196 aa14.33□□□□□ -0.11
CLN3-254ENST00000637050 ATP5G2Q06055 141 aa14.33□□□□□ -0.11
CLN3-254ENST00000637050 TOR2AQ5JU69 321 aa14.33□□□□□ -0.11
CLN3-254ENST00000637050 GATAD1Q8WUU5 269 aa14.33□□□□□ -0.11
CLN3-254ENST00000637050 TMEM37Q8WXS4 190 aa14.33□□□□□ -0.11
CLN3-254ENST00000637050 SEPSECSQ9HD40 501 aaKnown RBP14.33□□□□□ -0.11
CLN3-254ENST00000637050 TRBV7-1A0A0A6YYK4 115 aa14.33□□□□□ -0.12
CLN3-254ENST00000637050 EIF3GO75821 320 aaKnown RBP eCLIP14.33□□□□□ -0.12
CLN3-254ENST00000637050 IGHG4P01861 327 aa14.33□□□□□ -0.12
CLN3-254ENST00000637050 OR5G3P0C626 314 aa14.33□□□□□ -0.12
CLN3-254ENST00000637050 PSG1P11464 419 aa14.33□□□□□ -0.12
CLN3-254ENST00000637050 YPEL3P61236 119 aaPredicted RBP14.33□□□□□ -0.12
CLN3-254ENST00000637050 LINC00469Q8N7U9 141 aa14.33□□□□□ -0.12
CLN3-254ENST00000637050 EEF1AKMT3Q96AZ1 226 aa14.33□□□□□ -0.12
CLN3-254ENST00000637050 CCDC140Q96MF4 163 aa14.33□□□□□ -0.12
CLN3-254ENST00000637050 ATP6V0BQ99437 205 aa14.33□□□□□ -0.12
CLN3-254ENST00000637050 DNAJC4Q9NNZ3 241 aa14.33□□□□□ -0.12
CLN3-254ENST00000637050 FAM181BA6NEQ2 426 aa14.32□□□□□ -0.12
CLN3-254ENST00000637050 TOMM40O96008 361 aa14.32□□□□□ -0.12
CLN3-254ENST00000637050 CTSGP08311 255 aa14.32□□□□□ -0.12
CLN3-254ENST00000637050 RD3LP0DJH9 198 aa14.32□□□□□ -0.12
CLN3-254ENST00000637050 FGF8P55075 233 aaPredicted RBP14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms