RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 JPT1Q9UK76 154 aa-0.19□□□□□ -2.44
SCN1A-208ENST00000625916 V9GYY5 206 aaPredicted RBP-0.19□□□□□ -2.44
SCN1A-208ENST00000625916 HIVEP3Q5T1R4 2406 aa-0.19□□□□□ -2.44
SCN1A-208ENST00000625916 PIK3R4Q99570 1358 aa-0.19□□□□□ -2.44
SCN1A-208ENST00000625916 NCOR2Q9Y618 2525 aa-0.2□□□□□ -2.44
SCN1A-208ENST00000625916 TRAV9-1A0A075B6T8 112 aa-0.2□□□□□ -2.44
SCN1A-208ENST00000625916 IGHV1-58A0A0C4DH39 117 aa-0.2□□□□□ -2.44
SCN1A-208ENST00000625916 CXCR6O00574 342 aa-0.2□□□□□ -2.44
SCN1A-208ENST00000625916 CALUO43852 315 aaPredicted RBP-0.2□□□□□ -2.44
SCN1A-208ENST00000625916 NUPR1O60356 82 aa-0.2□□□□□ -2.44
SCN1A-208ENST00000625916 COX5BP10606 129 aa-0.2□□□□□ -2.44
SCN1A-208ENST00000625916 RPS12P25398 132 aaKnown RBP-0.2□□□□□ -2.44
SCN1A-208ENST00000625916 SPINT3P49223 89 aa-0.2□□□□□ -2.44
SCN1A-208ENST00000625916 CDC42P60953 191 aa-0.2□□□□□ -2.44
SCN1A-208ENST00000625916 RAB5BP61020 215 aa-0.2□□□□□ -2.44
SCN1A-208ENST00000625916 PMAIP1Q13794 54 aa-0.2□□□□□ -2.44
SCN1A-208ENST00000625916 BRMS1LQ5PSV4 323 aa-0.2□□□□□ -2.44
SCN1A-208ENST00000625916 OGFRL1Q5TC84 451 aaPredicted RBP-0.2□□□□□ -2.44
SCN1A-208ENST00000625916 HAGHLQ6PII5 290 aaPredicted RBP-0.2□□□□□ -2.44
SCN1A-208ENST00000625916 TRAPPC6BQ86SZ2 158 aa-0.2□□□□□ -2.44
SCN1A-208ENST00000625916 OR10AC1Q8NH08 325 aa-0.2□□□□□ -2.44
SCN1A-208ENST00000625916 TMEM254Q8TBM7 123 aa-0.2□□□□□ -2.44
SCN1A-208ENST00000625916 PSMF1Q92530 271 aa-0.2□□□□□ -2.44
SCN1A-208ENST00000625916 RAB8BQ92930 207 aa-0.2□□□□□ -2.44
SCN1A-208ENST00000625916 TOMM6Q96B49 74 aa-0.2□□□□□ -2.44
SCN1A-208ENST00000625916 OR51I1Q9H343 314 aa-0.2□□□□□ -2.44
SCN1A-208ENST00000625916 C11orf68Q9H3H3 251 aaKnown RBP-0.2□□□□□ -2.44
SCN1A-208ENST00000625916 C14orf132Q9NPU4 83 aa-0.2□□□□□ -2.44
SCN1A-208ENST00000625916 PRTFDC1Q9NRG1 225 aa-0.2□□□□□ -2.44
SCN1A-208ENST00000625916 IMP3Q9NV31 184 aaKnown RBP-0.2□□□□□ -2.44
SCN1A-208ENST00000625916 FGFR1OP2Q9NVK5 253 aa-0.2□□□□□ -2.44
SCN1A-208ENST00000625916 MED29Q9NX70 200 aa-0.2□□□□□ -2.44
SCN1A-208ENST00000625916 CMTM6Q9NX76 183 aa-0.2□□□□□ -2.44
SCN1A-208ENST00000625916 ORMDL1Q9P0S3 153 aa-0.2□□□□□ -2.44
SCN1A-208ENST00000625916 EVC2Q86UK5 1308 aa-0.2□□□□□ -2.44
SCN1A-208ENST00000625916 KIF13BQ9NQT8 1826 aa-0.2□□□□□ -2.44
SCN1A-208ENST00000625916 DMBT1Q9UGM3 2413 aaPredicted RBP-0.21□□□□□ -2.44
SCN1A-208ENST00000625916 CASP8AP2Q9UKL3 1982 aa-0.21□□□□□ -2.44
SCN1A-208ENST00000625916 TENM2Q9NT68 2774 aa-0.21□□□□□ -2.44
SCN1A-208ENST00000625916 DOCK3Q8IZD9 2030 aa-0.21□□□□□ -2.44
SCN1A-208ENST00000625916 SCN3AQ9NY46 2000 aa-0.21□□□□□ -2.44
SCN1A-208ENST00000625916 EXOC1LA0A1B0GW35 172 aa-0.21□□□□□ -2.44
SCN1A-208ENST00000625916 C7orf71A4D174 169 aa-0.21□□□□□ -2.44
SCN1A-208ENST00000625916 BUB1B-PAK6H3BSN5 160 aa-0.21□□□□□ -2.44
SCN1A-208ENST00000625916 HLA-DRB1P01911 266 aa-0.21□□□□□ -2.44
SCN1A-208ENST00000625916 OCM2P0CE71 109 aa-0.21□□□□□ -2.44
SCN1A-208ENST00000625916 FOXA3P55318 350 aaPredicted RBP-0.21□□□□□ -2.44
SCN1A-208ENST00000625916 FXYD6P3P58550 94 aa-0.21□□□□□ -2.44
SCN1A-208ENST00000625916 MED21Q13503 144 aa-0.21□□□□□ -2.44
SCN1A-208ENST00000625916 CLEC6AQ6EIG7 209 aa-0.21□□□□□ -2.44
SCN1A-208ENST00000625916 SFXN4Q6P4A7 337 aa-0.21□□□□□ -2.44
SCN1A-208ENST00000625916 ATOH7Q8N100 152 aa-0.21□□□□□ -2.44
SCN1A-208ENST00000625916 NIPSNAP1Q9BPW8 284 aa-0.21□□□□□ -2.44
SCN1A-208ENST00000625916 UPF3BQ9BZI7 483 aaKnown RBP-0.21□□□□□ -2.44
SCN1A-208ENST00000625916 TAS2R7Q9NYW3 318 aa-0.21□□□□□ -2.44
SCN1A-208ENST00000625916 LSM5Q9Y4Y9 91 aaKnown RBP-0.21□□□□□ -2.44
SCN1A-208ENST00000625916 NCOR1O75376 2440 aa-0.21□□□□□ -2.44
SCN1A-208ENST00000625916 SETD2Q9BYW2 2564 aaPredicted RBP-0.21□□□□□ -2.44
SCN1A-208ENST00000625916 NSD1Q96L73 2696 aaPredicted RBP-0.21□□□□□ -2.44
SCN1A-208ENST00000625916 EP300Q09472 2414 aaPredicted RBP-0.22□□□□□ -2.44
SCN1A-208ENST00000625916 DOPEY1Q5JWR5 2465 aa-0.22□□□□□ -2.44
SCN1A-208ENST00000625916 TCRBV4S1A1TA0A5B7 111 aa-0.22□□□□□ -2.44
SCN1A-208ENST00000625916 SMIM9A6NGZ8 99 aa-0.22□□□□□ -2.44
SCN1A-208ENST00000625916 EEF1E1-BLOC1S5C9J1V9 151 aa-0.22□□□□□ -2.44
SCN1A-208ENST00000625916 H0Y980 276 aa-0.22□□□□□ -2.44
SCN1A-208ENST00000625916 M0QZ92 97 aa-0.22□□□□□ -2.44
SCN1A-208ENST00000625916 AHSA1O95433 338 aa-0.22□□□□□ -2.44
SCN1A-208ENST00000625916 ZNF682O95780 498 aa-0.22□□□□□ -2.44
SCN1A-208ENST00000625916 DHFRP00374 187 aa-0.22□□□□□ -2.44
SCN1A-208ENST00000625916 OR5G3P0C626 314 aa-0.22□□□□□ -2.44
SCN1A-208ENST00000625916 OR4E1P0C645 316 aa-0.22□□□□□ -2.44
SCN1A-208ENST00000625916 TCL1AP56279 114 aa-0.22□□□□□ -2.44
SCN1A-208ENST00000625916 SKP1P63208 163 aa-0.22□□□□□ -2.44
SCN1A-208ENST00000625916 C12orf74Q32Q52 190 aa-0.22□□□□□ -2.44
SCN1A-208ENST00000625916 LINC01554Q52M75 96 aa-0.22□□□□□ -2.44
SCN1A-208ENST00000625916 CDKL4Q5MAI5 379 aa-0.22□□□□□ -2.44
SCN1A-208ENST00000625916 HIST2H3PS2Q5TEC6 136 aa-0.22□□□□□ -2.44
SCN1A-208ENST00000625916 FAM9CQ8IZT9 166 aa-0.22□□□□□ -2.44
SCN1A-208ENST00000625916 PSTPIP2Q9H939 334 aa-0.22□□□□□ -2.44
SCN1A-208ENST00000625916 TMEM56-RWDD3S4R434 201 aa-0.22□□□□□ -2.44
SCN1A-208ENST00000625916 TAF1LQ8IZX4 1826 aa-0.22□□□□□ -2.45
SCN1A-208ENST00000625916 BSNQ9UPA5 3926 aa-0.22□□□□□ -2.45
SCN1A-208ENST00000625916 ZANQ9Y493 2812 aa-0.23□□□□□ -2.45
SCN1A-208ENST00000625916 CITO14578 2027 aa-0.23□□□□□ -2.45
SCN1A-208ENST00000625916 HECTD1Q9ULT8 2610 aa-0.23□□□□□ -2.45
SCN1A-208ENST00000625916 FAT3Q8TDW7 4589 aa-0.23□□□□□ -2.45
SCN1A-208ENST00000625916 NUPR2A6NF83 97 aa-0.23□□□□□ -2.45
SCN1A-208ENST00000625916 LRRN3E7EW58 273 aa-0.23□□□□□ -2.45
SCN1A-208ENST00000625916 PSMD12O00232 456 aaPredicted RBP-0.23□□□□□ -2.45
SCN1A-208ENST00000625916 SLC16A4O15374 487 aa-0.23□□□□□ -2.45
SCN1A-208ENST00000625916 ANP32AP39687 249 aaKnown RBP-0.23□□□□□ -2.45
SCN1A-208ENST00000625916 AP2S1P53680 142 aaPredicted RBP-0.23□□□□□ -2.45
SCN1A-208ENST00000625916 YPEL3P61236 119 aaPredicted RBP-0.23□□□□□ -2.45
SCN1A-208ENST00000625916 SNRPD2P62316 118 aaKnown RBP-0.23□□□□□ -2.45
SCN1A-208ENST00000625916 SPOPLQ6IQ16 392 aa-0.23□□□□□ -2.45
SCN1A-208ENST00000625916 C2orf82Q6UX34 121 aa-0.23□□□□□ -2.45
SCN1A-208ENST00000625916 ALKAL1Q6UXT8 129 aa-0.23□□□□□ -2.45
SCN1A-208ENST00000625916 C20orf196Q8IYI0 205 aa-0.23□□□□□ -2.45
SCN1A-208ENST00000625916 ANKRD29Q8N6D5 301 aa-0.23□□□□□ -2.45
SCN1A-208ENST00000625916 OR52R1Q8NGF1 315 aa-0.23□□□□□ -2.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms